Wall clock time and date at job start Tue Mar 31 2020 15:06:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30741 * 1 3 3 Si 1.86799 * 120.00164 * 2 1 4 4 H 1.48504 * 109.47064 * 269.99623 * 3 2 1 5 5 H 1.48501 * 109.47212 * 29.99158 * 3 2 1 6 6 H 1.48502 * 109.47527 * 149.99315 * 3 2 1 7 7 C 1.40035 * 120.00059 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99984 * 196.29388 * 7 2 1 9 9 C 1.41536 * 120.00001 * 16.29011 * 7 2 1 10 10 C 1.41178 * 121.00001 * 203.78894 * 9 7 2 11 11 C 1.37581 * 119.02274 * 179.97438 * 10 9 7 12 12 N 1.32083 * 121.11455 * 359.97438 * 11 10 9 13 13 C 1.32486 * 122.22644 * 0.02562 * 12 11 10 14 14 N 1.39380 * 119.58143 * 179.97438 * 13 12 11 15 15 C 1.34777 * 119.99993 * 5.28296 * 14 13 12 16 16 O 1.21620 * 119.99940 * 355.08950 * 15 14 13 17 17 C 1.47244 * 119.99931 * 174.81265 * 15 14 13 18 18 C 1.39955 * 120.13580 * 0.27537 * 17 15 14 19 19 C 1.37890 * 119.97651 * 179.97438 * 18 17 15 20 20 C 1.39728 * 120.11804 * 359.97438 * 19 18 17 21 21 C 1.38611 * 120.14788 * 359.97438 * 20 19 18 22 22 C 1.38455 * 120.17915 * 359.76530 * 21 20 19 23 23 O 1.35729 * 120.07355 * 180.27542 * 22 21 20 24 24 O 1.36369 * 108.56640 * 179.97438 * 20 19 18 25 25 C 1.43959 * 105.55389 * 342.63655 * 24 20 19 26 26 O 1.36645 * 131.34313 * 179.97438 * 19 18 17 27 27 C 1.38623 * 120.83519 * 0.27389 * 13 12 11 28 28 H 0.96999 * 119.99570 * 0.02562 * 1 2 3 29 29 H 1.07999 * 120.48775 * 359.97438 * 10 9 7 30 30 H 1.08005 * 119.44367 * 180.02562 * 11 10 9 31 31 H 0.97003 * 120.00229 * 185.28641 * 14 13 12 32 32 H 1.08000 * 120.00677 * 0.02714 * 18 17 15 33 33 H 1.07994 * 119.90558 * 179.97438 * 21 20 19 34 34 H 0.96695 * 114.00234 * 270.22397 * 23 22 21 35 35 H 1.08998 * 110.55151 * 268.71105 * 25 24 20 36 36 H 1.09005 * 110.55646 * 145.87501 * 25 24 20 37 37 H 1.07999 * 120.60442 * 179.72270 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.4890 2.0463 -1.4001 5 1 1.4388 2.6527 0.6999 6 1 3.5390 1.4402 0.7002 7 6 2.0076 -1.2127 0.0005 8 1 3.0551 -1.2314 0.2630 9 6 1.3425 -2.4140 -0.3427 10 6 1.8220 -3.6641 0.1050 11 6 1.1434 -4.8063 -0.2525 12 7 0.0578 -4.7486 -1.0027 13 6 -0.4329 -3.6015 -1.4483 14 7 -1.5821 -3.6049 -2.2370 15 6 -2.2474 -4.7568 -2.4537 16 8 -1.7971 -5.8067 -2.0365 17 6 -3.5223 -4.7433 -3.1902 18 6 -4.0430 -3.5367 -3.6716 19 6 -5.2369 -3.5280 -4.3614 20 6 -5.9282 -4.7221 -4.5815 21 6 -5.4166 -5.9202 -4.1080 22 6 -4.2159 -5.9403 -3.4189 23 8 -3.7141 -7.1154 -2.9610 24 8 -7.0663 -4.4428 -5.2789 25 6 -7.2735 -3.0262 -5.1280 26 8 -5.9469 -2.5049 -4.9238 27 6 0.1857 -2.3985 -1.1453 28 1 -0.4849 0.8401 -0.0004 29 1 2.7085 -3.7230 0.7192 30 1 1.5040 -5.7662 0.0866 31 1 -1.9031 -2.7781 -2.6299 32 1 -3.5093 -2.6129 -3.5035 33 1 -5.9544 -6.8408 -4.2799 34 1 -4.0062 -7.3468 -2.0687 35 1 -7.9033 -2.8217 -4.2623 36 1 -7.7149 -2.6056 -6.0317 37 1 -0.2150 -1.4660 -1.5143 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000764348576.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:56 Heat of formation + Delta-G solvation = -83.003811 kcal Electronic energy + Delta-G solvation = -26614.984106 eV Core-core repulsion = 22516.458308 eV Total energy + Delta-G solvation = -4098.525797 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.094 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.30881 -41.50625 -40.20154 -38.94318 -37.45764 -37.03378 -36.10911 -35.46290 -32.56287 -32.15150 -30.54785 -30.02188 -27.91183 -26.93763 -25.27260 -24.16334 -23.85291 -23.15237 -21.61589 -20.09124 -19.65154 -19.39932 -18.58471 -18.42658 -17.56256 -17.33643 -16.91383 -16.72406 -16.28217 -16.06312 -15.95579 -15.73465 -15.50729 -15.44568 -15.03552 -14.77746 -14.38481 -14.35168 -14.18225 -14.06214 -13.55908 -13.17981 -12.94868 -12.90731 -12.66200 -12.10438 -11.95900 -11.90200 -11.74003 -11.49565 -11.15465 -11.02701 -10.12044 -9.94944 -9.61137 -9.21532 -8.85776 -8.64042 -6.56221 -0.56983 -0.08397 0.79601 1.00346 1.41954 1.46078 1.54697 1.58167 1.81703 2.04276 2.20539 2.32371 2.48933 2.82543 3.14513 3.20128 3.51398 3.72814 3.75789 3.81712 4.00011 4.12607 4.20989 4.30129 4.64014 4.71632 4.76019 4.78887 4.84195 4.90239 4.94396 5.05628 5.08163 5.22709 5.48460 5.62359 5.87561 5.90991 6.12875 6.44335 6.56497 6.71831 6.79638 6.83229 7.23312 7.82037 8.26404 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.014645 B = 0.003231 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1911.465404 B = 8664.214568 C =10484.613275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.041 3.959 3 Si 0.987 3.013 4 H -0.261 1.261 5 H -0.267 1.267 6 H -0.259 1.259 7 C -0.484 4.484 8 H 0.084 0.916 9 C 0.115 3.885 10 C -0.299 4.299 11 C 0.115 3.885 12 N -0.577 5.577 13 C 0.335 3.665 14 N -0.649 5.649 15 C 0.545 3.455 16 O -0.496 6.496 17 C -0.167 4.167 18 C -0.052 4.052 19 C 0.009 3.991 20 C 0.081 3.919 21 C -0.133 4.133 22 C 0.185 3.815 23 O -0.482 6.482 24 O -0.309 6.309 25 C 0.202 3.798 26 O -0.317 6.317 27 C -0.260 4.260 28 H 0.293 0.707 29 H 0.116 0.884 30 H 0.152 0.848 31 H 0.419 0.581 32 H 0.153 0.847 33 H 0.173 0.827 34 H 0.413 0.587 35 H 0.111 0.889 36 H 0.168 0.832 37 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.123 -1.417 -8.464 18.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.177 4.177 3 Si 0.807 3.193 4 H -0.186 1.186 5 H -0.191 1.191 6 H -0.182 1.182 7 C -0.514 4.514 8 H 0.102 0.898 9 C 0.107 3.893 10 C -0.322 4.322 11 C -0.039 4.039 12 N -0.297 5.297 13 C 0.110 3.890 14 N -0.297 5.297 15 C 0.333 3.667 16 O -0.368 6.368 17 C -0.171 4.171 18 C -0.071 4.071 19 C -0.035 4.035 20 C 0.035 3.965 21 C -0.152 4.152 22 C 0.137 3.863 23 O -0.295 6.295 24 O -0.225 6.225 25 C 0.092 3.908 26 O -0.233 6.233 27 C -0.286 4.286 28 H 0.104 0.896 29 H 0.134 0.866 30 H 0.169 0.831 31 H 0.257 0.743 32 H 0.170 0.830 33 H 0.191 0.809 34 H 0.274 0.726 35 H 0.129 0.871 36 H 0.185 0.815 37 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -16.359 -2.785 -9.115 18.933 hybrid contribution 0.408 1.969 0.635 2.109 sum -15.951 -0.816 -8.481 18.084 Atomic orbital electron populations 1.69805 1.09032 1.31028 1.33735 1.26808 0.95558 1.04538 0.90761 0.85123 0.79040 0.75484 0.79616 1.18558 1.19114 1.18241 1.19878 0.98083 0.91585 1.41878 0.89780 1.17988 0.90633 0.93373 0.87341 1.22090 1.05916 0.93742 1.10484 1.22228 0.90380 0.97926 0.93327 1.67353 1.16261 1.27049 1.19062 1.18360 0.87782 0.90443 0.92448 1.43334 1.24898 1.11775 1.49687 1.18345 0.84350 0.83689 0.80334 1.90869 1.67283 1.30432 1.48221 1.19969 0.96982 0.94074 1.06097 1.20077 0.93657 0.98081 0.95329 1.19526 0.96492 0.86613 1.00892 1.19838 0.88273 0.94414 0.93976 1.20276 0.95746 0.97350 1.01843 1.17948 0.89524 0.84386 0.94393 1.84750 1.72625 1.34349 1.37822 1.87344 1.40067 1.27734 1.67364 1.26288 0.83601 0.74129 1.06760 1.87434 1.23952 1.34866 1.77089 1.21527 1.03032 0.95660 1.08357 0.89635 0.86571 0.83125 0.74281 0.82960 0.80943 0.72556 0.87122 0.81464 0.85792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -39.40 10.90 21.84 0.24 -39.16 16 2 C 0.04 1.93 5.21 85.29 0.44 2.38 16 3 Si 0.99 35.63 29.59 68.60 2.03 37.66 16 4 H -0.26 -9.15 7.11 99.48 0.71 -8.44 16 5 H -0.27 -9.12 7.11 99.48 0.71 -8.41 16 6 H -0.26 -9.18 7.11 99.48 0.71 -8.48 16 7 C -0.48 -24.95 9.12 23.52 0.21 -24.73 16 8 H 0.08 4.16 7.90 -2.91 -0.02 4.13 16 9 C 0.11 6.14 5.60 -21.12 -0.12 6.02 16 10 C -0.30 -14.84 9.90 22.84 0.23 -14.61 16 11 C 0.12 5.56 11.15 84.50 0.94 6.51 16 12 N -0.58 -29.89 7.85 -193.57 -1.52 -31.41 16 13 C 0.34 16.62 7.41 132.78 0.98 17.60 16 14 N -0.65 -26.27 5.33 -311.78 -1.66 -27.93 16 15 C 0.55 21.39 7.71 86.61 0.67 22.06 16 16 O -0.50 -22.91 13.39 16.90 0.23 -22.68 16 17 C -0.17 -4.98 5.89 -20.01 -0.12 -5.10 16 18 C -0.05 -1.31 9.54 22.60 0.22 -1.10 16 19 C 0.01 0.21 7.13 22.55 0.16 0.37 16 20 C 0.08 1.71 7.15 22.72 0.16 1.87 16 21 C -0.13 -2.75 9.98 22.41 0.22 -2.52 16 22 C 0.18 4.83 6.71 22.80 0.15 4.98 16 23 O -0.48 -13.06 11.56 -69.53 -0.80 -13.86 16 24 O -0.31 -5.49 11.39 -74.52 -0.85 -6.34 16 25 C 0.20 2.41 8.88 113.37 1.01 3.42 16 26 O -0.32 -6.35 11.41 -77.77 -0.89 -7.23 16 27 C -0.26 -13.45 8.62 22.99 0.20 -13.25 16 28 H 0.29 12.67 8.29 -92.71 -0.77 11.90 16 29 H 0.12 5.26 8.06 -2.91 -0.02 5.24 16 30 H 0.15 6.24 8.06 -2.91 -0.02 6.21 16 31 H 0.42 14.03 6.73 -92.71 -0.62 13.41 16 32 H 0.15 3.45 6.41 -2.91 -0.02 3.43 16 33 H 0.17 2.64 8.06 -2.91 -0.02 2.62 16 34 H 0.41 8.02 9.06 -74.06 -0.67 7.34 16 35 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.17 0.80 8.14 -2.38 -0.02 0.78 16 37 H 0.12 6.35 6.19 -2.91 -0.02 6.33 16 Total: -1.00 -72.24 327.78 2.03 -70.22 By element: Atomic # 1 Polarization: 36.96 SS G_CDS: -0.11 Total: 36.85 kcal Atomic # 6 Polarization: -1.48 SS G_CDS: 5.36 Total: 3.89 kcal Atomic # 7 Polarization: -95.56 SS G_CDS: -2.94 Total: -98.50 kcal Atomic # 8 Polarization: -47.81 SS G_CDS: -2.31 Total: -50.12 kcal Atomic # 14 Polarization: 35.63 SS G_CDS: 2.03 Total: 37.66 kcal Total: -72.24 2.03 -70.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764348576.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.785 kcal (2) G-P(sol) polarization free energy of solvation -72.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds