Wall clock time and date at job start Tue Mar 31 2020 14:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86807 * 119.99987 * 2 1 4 4 H 1.48494 * 109.46959 * 269.99674 * 3 2 1 5 5 H 1.48500 * 109.46894 * 29.99870 * 3 2 1 6 6 H 1.48503 * 109.47116 * 149.99492 * 3 2 1 7 7 C 1.39941 * 120.00206 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00772 * 197.84661 * 7 2 1 9 9 C 1.41400 * 119.99977 * 17.85227 * 7 2 1 10 10 C 1.40713 * 120.24380 * 204.38230 * 9 7 2 11 11 C 1.37620 * 119.74404 * 180.02562 * 10 9 7 12 12 C 1.38637 * 120.24746 * 0.02562 * 11 10 9 13 13 C 1.50703 * 119.75027 * 179.97438 * 12 11 10 14 14 O 1.45195 * 109.46967 * 90.00361 * 13 12 11 15 15 C 1.34902 * 116.99819 * 180.02562 * 14 13 12 16 16 O 1.21630 * 119.99826 * 359.97438 * 15 14 13 17 17 C 1.46393 * 119.99783 * 179.97438 * 15 14 13 18 18 S 1.75830 * 125.46699 * 0.28944 * 17 15 14 19 19 C 1.70615 * 91.56508 * 180.02562 * 18 17 15 20 20 C 1.33859 * 110.95991 * 359.70921 * 19 18 17 21 21 C 1.36756 * 125.45963 * 179.97438 * 17 15 14 22 22 C 1.50701 * 123.35567 * 0.02562 * 21 17 15 23 23 C 1.53004 * 117.49829 * 188.74745 * 22 21 17 24 24 C 1.53002 * 117.50111 * 120.08844 * 22 21 17 25 25 C 1.38642 * 120.50180 * 0.25822 * 12 11 10 26 26 C 1.37617 * 120.24544 * 359.44624 * 25 12 11 27 27 H 0.96996 * 119.99870 * 0.02562 * 1 2 3 28 28 H 1.07992 * 120.12961 * 359.97438 * 10 9 7 29 29 H 1.07996 * 119.88006 * 180.02562 * 11 10 9 30 30 H 1.08993 * 109.46713 * 330.00192 * 13 12 11 31 31 H 1.09000 * 109.46764 * 210.00316 * 13 12 11 32 32 H 1.07995 * 124.51909 * 179.97438 * 19 18 17 33 33 H 1.08003 * 122.44000 * 180.21031 * 20 19 18 34 34 H 1.09002 * 115.55139 * 334.41798 * 22 21 17 35 35 H 1.08998 * 117.49675 * 359.97438 * 23 22 21 36 36 H 1.08995 * 117.49697 * 145.02383 * 23 22 21 37 37 H 1.08994 * 117.50241 * 214.98133 * 24 22 21 38 38 H 1.08999 * 117.49517 * 359.97438 * 24 22 21 39 39 H 1.07998 * 119.87371 * 179.70415 * 25 12 11 40 40 H 1.07998 * 120.12708 * 180.27474 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.4898 2.0464 -1.4000 5 1 1.4396 2.6527 0.7000 6 1 3.5398 1.4403 0.7002 7 6 2.0080 -1.2119 0.0005 8 1 3.0490 -1.2344 0.2872 9 6 1.3521 -2.4072 -0.3743 10 6 1.8259 -3.6498 0.0854 11 6 1.1799 -4.8068 -0.2862 12 6 0.0668 -4.7511 -1.1108 13 6 -0.6316 -6.0251 -1.5113 14 8 -1.6655 -6.3360 -0.5404 15 6 -2.3895 -7.4541 -0.7536 16 8 -2.1624 -8.1496 -1.7252 17 6 -3.4484 -7.8304 0.1846 18 16 -3.9018 -6.9307 1.6256 19 6 -5.1148 -8.0672 2.0104 20 6 -5.1613 -9.0454 1.0978 21 6 -4.2478 -8.9348 0.0774 22 6 -4.1378 -9.9312 -1.0479 23 6 -5.2255 -11.0022 -1.1520 24 6 -3.8201 -11.3816 -0.6788 25 6 -0.4053 -3.5328 -1.5744 26 6 0.2213 -2.3627 -1.2107 27 1 -0.4850 0.8400 -0.0004 28 1 2.6935 -3.6955 0.7268 29 1 1.5414 -5.7616 0.0657 30 1 0.0912 -6.8401 -1.5460 31 1 -1.0834 -5.8978 -2.4951 32 1 -5.7619 -8.0033 2.8726 33 1 -5.8654 -9.8620 1.1592 34 1 -3.7204 -9.5456 -1.9781 35 1 -6.0204 -10.9863 -0.4063 36 1 -5.5234 -11.3215 -2.1507 37 1 -3.1941 -11.9504 -1.3662 38 1 -3.6902 -11.6151 0.3780 39 1 -1.2704 -3.5016 -2.2202 40 1 -0.1507 -1.4144 -1.5694 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776110615.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:36 Heat of formation + Delta-G solvation = -13.977829 kcal Electronic energy + Delta-G solvation = -23712.261924 eV Core-core repulsion = 20163.022532 eV Total energy + Delta-G solvation = -3549.239392 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.092 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.19703 -38.94610 -37.62359 -35.94379 -35.78160 -33.86883 -30.98914 -30.13669 -29.36759 -27.32031 -25.62178 -23.79374 -22.70613 -22.26150 -21.72285 -21.08613 -20.05683 -18.73195 -18.12238 -17.39524 -16.65275 -16.38120 -15.99096 -15.44041 -15.14332 -14.78204 -14.16259 -13.95473 -13.87732 -13.76229 -13.24803 -12.82604 -12.64597 -12.32143 -12.28486 -12.03488 -12.02653 -11.73804 -11.67571 -11.20251 -11.09853 -11.00214 -10.84185 -10.78830 -10.51821 -10.45422 -10.16119 -10.09967 -9.69742 -9.46964 -9.23573 -8.95973 -8.48235 -7.56843 -7.45807 -6.87105 -4.47067 0.31975 1.40270 1.84370 2.12430 2.43030 2.94833 2.97352 3.00482 3.03293 3.05418 3.38833 3.81364 3.85268 4.46182 4.51996 4.64543 4.79616 4.89698 5.05714 5.20453 5.29363 5.43591 5.61124 5.62345 5.67036 5.69435 5.79714 5.87025 5.91957 6.06631 6.09084 6.24918 6.31189 6.32244 6.82555 6.87538 6.97195 7.18055 7.26248 7.51414 7.73570 7.95471 8.00591 8.03625 8.18888 8.53581 8.78142 8.86383 10.06626 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.023508 B = 0.002443 C = 0.002306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.821554 B =11458.490186 C =12138.725407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.075 3.925 3 Si 0.911 3.089 4 H -0.266 1.266 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.456 4.456 8 H 0.080 0.920 9 C 0.119 3.881 10 C -0.230 4.230 11 C -0.063 4.063 12 C -0.236 4.236 13 C 0.139 3.861 14 O -0.347 6.347 15 C 0.533 3.467 16 O -0.507 6.507 17 C -0.258 4.258 18 S 0.266 5.734 19 C -0.239 4.239 20 C -0.154 4.154 21 C 0.010 3.990 22 C -0.106 4.106 23 C -0.176 4.176 24 C -0.163 4.163 25 C -0.075 4.075 26 C -0.171 4.171 27 H 0.283 0.717 28 H 0.095 0.905 29 H 0.089 0.911 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.170 0.830 33 H 0.143 0.857 34 H 0.136 0.864 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.099 0.901 38 H 0.094 0.906 39 H 0.089 0.911 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.660 -14.455 2.106 18.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.144 4.144 3 Si 0.735 3.265 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.185 1.185 7 C -0.485 4.485 8 H 0.099 0.901 9 C 0.116 3.884 10 C -0.250 4.250 11 C -0.081 4.081 12 C -0.238 4.238 13 C 0.067 3.933 14 O -0.264 6.264 15 C 0.378 3.622 16 O -0.399 6.399 17 C -0.377 4.377 18 S 0.537 5.463 19 C -0.377 4.377 20 C -0.185 4.185 21 C -0.005 4.005 22 C -0.126 4.126 23 C -0.213 4.213 24 C -0.200 4.200 25 C -0.093 4.093 26 C -0.190 4.190 27 H 0.094 0.906 28 H 0.113 0.887 29 H 0.107 0.893 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.188 0.812 33 H 0.161 0.839 34 H 0.153 0.847 35 H 0.114 0.886 36 H 0.117 0.883 37 H 0.117 0.883 38 H 0.113 0.887 39 H 0.107 0.893 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -10.245 -13.053 2.565 16.790 hybrid contribution -0.297 -0.584 -0.556 0.859 sum -10.542 -13.636 2.009 17.353 Atomic orbital electron populations 1.69827 1.07669 1.29529 1.33865 1.25974 0.94766 1.01540 0.92143 0.86270 0.80506 0.80312 0.79440 1.19147 1.20207 1.18506 1.19689 0.98246 0.91221 1.39295 0.90145 1.17691 0.90792 0.92083 0.87849 1.20960 1.04136 0.92667 1.07196 1.20395 0.95090 0.96663 0.95960 1.18671 1.01262 0.91907 1.11942 1.21762 0.86255 0.96024 0.89278 1.86819 1.46262 1.40109 1.53186 1.19649 0.79971 0.79517 0.83109 1.90781 1.67305 1.52536 1.29267 1.23544 1.06061 1.03811 1.04241 1.83687 1.25157 1.21854 1.15570 1.25506 1.05885 1.01124 1.05226 1.19742 1.02112 1.01658 0.95016 1.18664 0.93141 0.93351 0.95337 1.21018 1.04280 0.88476 0.98781 1.23062 0.92261 1.03019 1.02975 1.22967 0.98571 0.96276 1.02205 1.20544 0.97638 0.92453 0.98695 1.21293 0.99703 0.96642 1.01340 0.90621 0.88709 0.89293 0.91940 0.91889 0.81244 0.83903 0.84673 0.88611 0.88320 0.88253 0.88726 0.89316 0.86228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.76 10.95 55.55 0.61 -19.15 16 2 C 0.07 1.83 5.14 -17.34 -0.09 1.74 16 3 Si 0.91 18.10 29.60 -169.99 -5.03 13.07 16 4 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 5 H -0.28 -5.38 7.11 56.52 0.40 -4.98 16 6 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 7 C -0.46 -11.77 9.05 -37.74 -0.34 -12.12 16 8 H 0.08 1.99 7.91 -52.48 -0.41 1.58 16 9 C 0.12 3.10 5.57 -106.82 -0.60 2.51 16 10 C -0.23 -5.57 9.80 -38.87 -0.38 -5.95 16 11 C -0.06 -1.41 9.67 -39.66 -0.38 -1.79 16 12 C -0.24 -5.25 5.54 -104.32 -0.58 -5.82 16 13 C 0.14 2.69 5.59 36.01 0.20 2.89 16 14 O -0.35 -6.70 10.06 -41.05 -0.41 -7.11 16 15 C 0.53 9.40 7.92 34.01 0.27 9.67 16 16 O -0.51 -9.42 14.09 -19.37 -0.27 -9.69 16 17 C -0.26 -3.84 6.45 -36.84 -0.24 -4.07 16 18 S 0.27 3.31 22.92 -107.50 -2.46 0.84 16 19 C -0.24 -2.31 10.92 29.19 0.32 -1.99 16 20 C -0.15 -1.58 9.46 -41.42 -0.39 -1.97 16 21 C 0.01 0.13 5.60 -105.46 -0.59 -0.46 16 22 C -0.11 -1.26 5.44 -91.77 -0.50 -1.76 16 23 C -0.18 -1.54 9.95 -26.69 -0.27 -1.80 16 24 C -0.16 -1.57 10.22 -26.69 -0.27 -1.84 16 25 C -0.07 -1.74 9.67 -39.66 -0.38 -2.13 16 26 C -0.17 -4.36 8.70 -38.87 -0.34 -4.70 16 27 H 0.28 6.45 8.30 -40.82 -0.34 6.11 16 28 H 0.09 2.15 8.06 -52.49 -0.42 1.72 16 29 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 30 H 0.06 1.14 8.08 -51.93 -0.42 0.72 16 31 H 0.06 1.16 8.07 -51.93 -0.42 0.75 16 32 H 0.17 1.13 8.06 -52.49 -0.42 0.70 16 33 H 0.14 1.12 6.61 -52.48 -0.35 0.77 16 34 H 0.14 1.89 6.17 -51.93 -0.32 1.57 16 35 H 0.10 0.71 6.56 -51.93 -0.34 0.37 16 36 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.09 1.89 8.06 -52.49 -0.42 1.47 16 40 H 0.12 3.14 6.16 -52.49 -0.32 2.82 16 LS Contribution 358.15 15.07 5.40 5.40 Total: -1.00 -28.24 358.15 -11.41 -39.65 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -4.68 Total: 6.60 kcal Atomic # 6 Polarization: -25.05 SS G_CDS: -4.56 Total: -29.61 kcal Atomic # 7 Polarization: -19.76 SS G_CDS: 0.61 Total: -19.15 kcal Atomic # 8 Polarization: -16.12 SS G_CDS: -0.69 Total: -16.81 kcal Atomic # 14 Polarization: 18.10 SS G_CDS: -5.03 Total: 13.07 kcal Atomic # 16 Polarization: 3.31 SS G_CDS: -2.46 Total: 0.84 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -28.24 -11.41 -39.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776110615.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.676 kcal (2) G-P(sol) polarization free energy of solvation -28.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds