Wall clock time and date at job start Tue Mar 31 2020 14:49:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86807 * 119.99987 * 2 1 4 4 H 1.48494 * 109.46959 * 269.99674 * 3 2 1 5 5 H 1.48500 * 109.46894 * 29.99870 * 3 2 1 6 6 H 1.48503 * 109.47116 * 149.99492 * 3 2 1 7 7 C 1.39941 * 120.00206 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00772 * 197.84661 * 7 2 1 9 9 C 1.41400 * 119.99977 * 17.85227 * 7 2 1 10 10 C 1.40713 * 120.24380 * 204.38230 * 9 7 2 11 11 C 1.37620 * 119.74404 * 180.02562 * 10 9 7 12 12 C 1.38637 * 120.24746 * 0.02562 * 11 10 9 13 13 C 1.50703 * 119.75027 * 179.97438 * 12 11 10 14 14 O 1.45195 * 109.46967 * 90.00361 * 13 12 11 15 15 C 1.34902 * 116.99819 * 180.02562 * 14 13 12 16 16 O 1.21630 * 119.99826 * 359.97438 * 15 14 13 17 17 C 1.46393 * 119.99783 * 179.97438 * 15 14 13 18 18 S 1.75830 * 125.46699 * 0.28944 * 17 15 14 19 19 C 1.70615 * 91.56508 * 180.02562 * 18 17 15 20 20 C 1.33859 * 110.95991 * 359.70921 * 19 18 17 21 21 C 1.36756 * 125.45963 * 179.97438 * 17 15 14 22 22 C 1.50701 * 123.35567 * 0.02562 * 21 17 15 23 23 C 1.53004 * 117.49829 * 188.74745 * 22 21 17 24 24 C 1.53002 * 117.50111 * 120.08844 * 22 21 17 25 25 C 1.38642 * 120.50180 * 0.25822 * 12 11 10 26 26 C 1.37617 * 120.24544 * 359.44624 * 25 12 11 27 27 H 0.96996 * 119.99870 * 0.02562 * 1 2 3 28 28 H 1.07992 * 120.12961 * 359.97438 * 10 9 7 29 29 H 1.07996 * 119.88006 * 180.02562 * 11 10 9 30 30 H 1.08993 * 109.46713 * 330.00192 * 13 12 11 31 31 H 1.09000 * 109.46764 * 210.00316 * 13 12 11 32 32 H 1.07995 * 124.51909 * 179.97438 * 19 18 17 33 33 H 1.08003 * 122.44000 * 180.21031 * 20 19 18 34 34 H 1.09002 * 115.55139 * 334.41798 * 22 21 17 35 35 H 1.08998 * 117.49675 * 359.97438 * 23 22 21 36 36 H 1.08995 * 117.49697 * 145.02383 * 23 22 21 37 37 H 1.08994 * 117.50241 * 214.98133 * 24 22 21 38 38 H 1.08999 * 117.49517 * 359.97438 * 24 22 21 39 39 H 1.07998 * 119.87371 * 179.70415 * 25 12 11 40 40 H 1.07998 * 120.12708 * 180.27474 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.4898 2.0464 -1.4000 5 1 1.4396 2.6527 0.7000 6 1 3.5398 1.4403 0.7002 7 6 2.0080 -1.2119 0.0005 8 1 3.0490 -1.2344 0.2872 9 6 1.3521 -2.4072 -0.3743 10 6 1.8259 -3.6498 0.0854 11 6 1.1799 -4.8068 -0.2862 12 6 0.0668 -4.7511 -1.1108 13 6 -0.6316 -6.0251 -1.5113 14 8 -1.6655 -6.3360 -0.5404 15 6 -2.3895 -7.4541 -0.7536 16 8 -2.1624 -8.1496 -1.7252 17 6 -3.4484 -7.8304 0.1846 18 16 -3.9018 -6.9307 1.6256 19 6 -5.1148 -8.0672 2.0104 20 6 -5.1613 -9.0454 1.0978 21 6 -4.2478 -8.9348 0.0774 22 6 -4.1378 -9.9312 -1.0479 23 6 -5.2255 -11.0022 -1.1520 24 6 -3.8201 -11.3816 -0.6788 25 6 -0.4053 -3.5328 -1.5744 26 6 0.2213 -2.3627 -1.2107 27 1 -0.4850 0.8400 -0.0004 28 1 2.6935 -3.6955 0.7268 29 1 1.5414 -5.7616 0.0657 30 1 0.0912 -6.8401 -1.5460 31 1 -1.0834 -5.8978 -2.4951 32 1 -5.7619 -8.0033 2.8726 33 1 -5.8654 -9.8620 1.1592 34 1 -3.7204 -9.5456 -1.9781 35 1 -6.0204 -10.9863 -0.4063 36 1 -5.5234 -11.3215 -2.1507 37 1 -3.1941 -11.9504 -1.3662 38 1 -3.6902 -11.6151 0.3780 39 1 -1.2704 -3.5016 -2.2202 40 1 -0.1507 -1.4144 -1.5694 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776110615.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:35 Heat of formation + Delta-G solvation = -25.102438 kcal Electronic energy + Delta-G solvation = -23712.744323 eV Core-core repulsion = 20163.022532 eV Total energy + Delta-G solvation = -3549.721791 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.092 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.49409 -40.01284 -39.38230 -37.38495 -36.61582 -35.69619 -32.69683 -31.31406 -31.17739 -28.99376 -26.77527 -25.41256 -23.51631 -23.05932 -22.99057 -22.87407 -21.85513 -19.92322 -19.28493 -19.17119 -17.78812 -17.49171 -17.39440 -17.13821 -16.48280 -15.79930 -15.68292 -15.50844 -15.31655 -14.68510 -14.41487 -14.41045 -13.98455 -13.87776 -13.73856 -13.58478 -13.38966 -12.90692 -12.87452 -12.71729 -12.59133 -12.38101 -12.14194 -11.99042 -11.73632 -11.65139 -11.55268 -11.44778 -11.30851 -11.15174 -11.05499 -9.90712 -9.46291 -9.39496 -9.35780 -8.69909 -6.41233 -0.66585 0.45156 0.70034 0.96049 1.09166 1.18814 1.37926 1.43491 1.52089 1.79392 1.88828 2.18943 2.70764 3.02809 3.59668 3.67449 3.82859 3.91285 4.05559 4.06572 4.07792 4.17244 4.27998 4.44922 4.47075 4.52405 4.53960 4.74843 4.85996 4.98558 5.00705 5.07093 5.10599 5.22549 5.24476 5.28529 5.29626 5.37752 5.54408 5.63189 5.86106 6.03877 6.12412 6.29830 6.62456 6.65621 6.86906 6.95258 8.26804 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.023508 B = 0.002443 C = 0.002306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.821554 B =11458.490186 C =12138.725407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.034 3.966 3 Si 0.986 3.014 4 H -0.262 1.262 5 H -0.267 1.267 6 H -0.257 1.257 7 C -0.491 4.491 8 H 0.081 0.919 9 C 0.088 3.912 10 C -0.244 4.244 11 C -0.064 4.064 12 C -0.232 4.232 13 C 0.143 3.857 14 O -0.361 6.361 15 C 0.531 3.469 16 O -0.527 6.527 17 C -0.306 4.306 18 S 0.237 5.763 19 C -0.204 4.204 20 C -0.161 4.161 21 C 0.026 3.974 22 C -0.142 4.142 23 C -0.150 4.150 24 C -0.158 4.158 25 C -0.080 4.080 26 C -0.193 4.193 27 H 0.291 0.709 28 H 0.104 0.896 29 H 0.116 0.884 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.209 0.791 33 H 0.178 0.822 34 H 0.106 0.894 35 H 0.118 0.882 36 H 0.109 0.891 37 H 0.101 0.899 38 H 0.104 0.896 39 H 0.104 0.896 40 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.395 -16.124 3.217 20.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.182 4.182 3 Si 0.806 3.194 4 H -0.186 1.186 5 H -0.191 1.191 6 H -0.180 1.180 7 C -0.520 4.520 8 H 0.099 0.901 9 C 0.086 3.914 10 C -0.264 4.264 11 C -0.082 4.082 12 C -0.233 4.233 13 C 0.071 3.929 14 O -0.278 6.278 15 C 0.378 3.622 16 O -0.420 6.420 17 C -0.424 4.424 18 S 0.507 5.493 19 C -0.342 4.342 20 C -0.191 4.191 21 C 0.010 3.990 22 C -0.162 4.162 23 C -0.186 4.186 24 C -0.195 4.195 25 C -0.098 4.098 26 C -0.212 4.212 27 H 0.102 0.898 28 H 0.122 0.878 29 H 0.134 0.866 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.226 0.774 33 H 0.195 0.805 34 H 0.124 0.876 35 H 0.136 0.864 36 H 0.127 0.873 37 H 0.120 0.880 38 H 0.122 0.878 39 H 0.122 0.878 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -11.987 -14.742 3.676 19.353 hybrid contribution 0.095 -0.285 -0.896 0.945 sum -11.892 -15.027 2.780 19.364 Atomic orbital electron populations 1.69875 1.09136 1.30920 1.34290 1.26843 0.95512 1.04755 0.91055 0.85148 0.79091 0.75569 0.79597 1.18635 1.19127 1.18030 1.19938 0.98552 0.92335 1.41135 0.90123 1.18047 0.91521 0.93224 0.88615 1.21169 1.04766 0.92776 1.07645 1.20696 0.94777 0.97313 0.95441 1.18959 1.01049 0.92648 1.10624 1.21602 0.86749 0.94999 0.89522 1.86770 1.46541 1.41414 1.53085 1.20081 0.80108 0.78563 0.83495 1.90762 1.68094 1.52866 1.30270 1.23449 1.07265 1.06114 1.05590 1.83768 1.27057 1.23284 1.15163 1.25932 1.03924 0.98860 1.05458 1.20026 1.02104 1.02847 0.94123 1.19036 0.92220 0.92166 0.95602 1.20977 1.07772 0.89634 0.97805 1.23206 0.91931 0.99306 1.04203 1.23063 0.99616 0.93949 1.02899 1.20763 0.97908 0.92387 0.98756 1.21264 1.00595 0.96840 1.02528 0.89827 0.87808 0.86581 0.90779 0.91294 0.77438 0.80530 0.87574 0.86400 0.87254 0.88012 0.87806 0.87760 0.87684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.35 10.95 21.83 0.24 -42.11 16 2 C 0.03 1.71 5.14 85.26 0.44 2.15 16 3 Si 0.99 37.45 29.60 68.60 2.03 39.49 16 4 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 5 H -0.27 -9.61 7.11 99.48 0.71 -8.90 16 6 H -0.26 -9.47 7.11 99.48 0.71 -8.76 16 7 C -0.49 -26.24 9.05 23.46 0.21 -26.03 16 8 H 0.08 4.13 7.91 -2.91 -0.02 4.11 16 9 C 0.09 4.81 5.57 -21.29 -0.12 4.69 16 10 C -0.24 -12.10 9.80 22.73 0.22 -11.87 16 11 C -0.06 -2.89 9.67 22.22 0.21 -2.67 16 12 C -0.23 -10.37 5.54 -19.67 -0.11 -10.48 16 13 C 0.14 5.58 5.59 71.24 0.40 5.98 16 14 O -0.36 -14.18 10.06 -58.17 -0.59 -14.76 16 15 C 0.53 19.15 7.92 69.94 0.55 19.70 16 16 O -0.53 -20.13 14.09 19.41 0.27 -19.85 16 17 C -0.31 -9.07 6.45 24.05 0.16 -8.92 16 18 S 0.24 5.67 22.92 -56.49 -1.29 4.38 16 19 C -0.20 -3.22 10.92 66.82 0.73 -2.49 16 20 C -0.16 -2.71 9.46 21.08 0.20 -2.51 16 21 C 0.03 0.63 5.60 -20.41 -0.11 0.51 16 22 C -0.14 -3.22 5.44 -11.54 -0.06 -3.28 16 23 C -0.15 -2.13 9.95 30.62 0.30 -1.83 16 24 C -0.16 -2.69 10.22 30.62 0.31 -2.38 16 25 C -0.08 -3.82 9.67 22.22 0.21 -3.60 16 26 C -0.19 -10.29 8.70 22.73 0.20 -10.09 16 27 H 0.29 13.54 8.30 -92.71 -0.77 12.77 16 28 H 0.10 4.80 8.06 -2.91 -0.02 4.78 16 29 H 0.12 4.52 8.06 -2.91 -0.02 4.49 16 30 H 0.07 2.69 8.08 -2.39 -0.02 2.67 16 31 H 0.07 2.57 8.07 -2.39 -0.02 2.55 16 32 H 0.21 1.66 8.06 -2.91 -0.02 1.64 16 33 H 0.18 1.78 6.61 -2.91 -0.02 1.77 16 34 H 0.11 3.05 6.17 -2.39 -0.01 3.04 16 35 H 0.12 1.17 6.56 -2.39 -0.02 1.15 16 36 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.10 4.54 8.06 -2.91 -0.02 4.52 16 40 H 0.11 5.81 6.16 -2.91 -0.02 5.79 16 Total: -1.00 -64.29 358.15 5.48 -58.81 By element: Atomic # 1 Polarization: 26.11 SS G_CDS: 1.07 Total: 27.18 kcal Atomic # 6 Polarization: -56.87 SS G_CDS: 3.75 Total: -53.12 kcal Atomic # 7 Polarization: -42.35 SS G_CDS: 0.24 Total: -42.11 kcal Atomic # 8 Polarization: -34.30 SS G_CDS: -0.31 Total: -34.62 kcal Atomic # 14 Polarization: 37.45 SS G_CDS: 2.03 Total: 39.49 kcal Atomic # 16 Polarization: 5.67 SS G_CDS: -1.29 Total: 4.38 kcal Total: -64.29 5.48 -58.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776110615.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.705 kcal (2) G-P(sol) polarization free energy of solvation -64.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds