Wall clock time and date at job start Tue Mar 31 2020 15:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86796 * 120.00114 * 2 1 4 4 H 1.48500 * 109.47276 * 274.66919 * 3 2 1 5 5 H 1.48499 * 109.47133 * 34.66512 * 3 2 1 6 6 H 1.48496 * 109.47413 * 154.66462 * 3 2 1 7 7 C 1.39951 * 119.99953 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00079 * 162.23235 * 7 2 1 9 9 C 1.41398 * 119.99876 * 342.22236 * 7 2 1 10 10 C 1.40723 * 120.24055 * 155.28863 * 9 7 2 11 11 C 1.37610 * 119.73997 * 180.02562 * 10 9 7 12 12 C 1.38635 * 120.25511 * 0.02803 * 11 10 9 13 13 C 1.50698 * 119.75196 * 179.97438 * 12 11 10 14 14 O 1.45198 * 109.47161 * 89.99532 * 13 12 11 15 15 C 1.34231 * 116.99771 * 179.97438 * 14 13 12 16 16 O 1.20824 * 119.99949 * 0.02562 * 15 14 13 17 17 C 1.50696 * 119.99899 * 179.97438 * 15 14 13 18 18 S 1.81407 * 109.47154 * 180.02562 * 17 15 14 19 19 C 1.76203 * 102.99967 * 180.02562 * 18 17 15 20 20 C 1.38974 * 120.07996 * 359.73355 * 19 18 17 21 21 C 1.38086 * 119.91717 * 179.76409 * 20 19 18 22 22 C 1.38299 * 120.07844 * 0.48333 * 21 20 19 23 23 C 1.38301 * 120.16506 * 359.76566 * 22 21 20 24 24 C 1.38085 * 120.07861 * 0.02562 * 23 22 21 25 25 C 1.38634 * 120.49962 * 0.25044 * 12 11 10 26 26 C 1.37621 * 120.24547 * 359.44337 * 25 12 11 27 27 H 0.96999 * 120.00031 * 359.97438 * 1 2 3 28 28 H 1.08000 * 120.12332 * 0.02562 * 10 9 7 29 29 H 1.08004 * 119.87266 * 180.02562 * 11 10 9 30 30 H 1.09003 * 109.46896 * 329.99827 * 13 12 11 31 31 H 1.08999 * 109.46922 * 210.00228 * 13 12 11 32 32 H 1.08997 * 109.47878 * 300.00566 * 17 15 14 33 33 H 1.09003 * 109.46883 * 60.00914 * 17 15 14 34 34 H 1.08003 * 120.04042 * 359.97438 * 20 19 18 35 35 H 1.08001 * 119.96011 * 180.22933 * 21 20 19 36 36 H 1.08006 * 119.91714 * 179.74805 * 22 21 20 37 37 H 1.08000 * 119.96590 * 179.97438 * 23 22 21 38 38 H 1.07999 * 120.04281 * 179.97438 * 24 23 22 39 39 H 1.07997 * 119.88063 * 179.70938 * 25 12 11 40 40 H 1.08001 * 120.13177 * 180.27444 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3911 2.1034 -1.3954 5 1 1.4925 2.6221 0.7963 6 1 3.5856 1.4137 0.5991 7 6 2.0080 -1.2120 -0.0005 8 1 3.0494 -1.2342 -0.2860 9 6 1.3516 -2.4075 0.3728 10 6 1.8218 -3.6494 -0.0929 11 6 1.1748 -4.8064 0.2765 12 6 0.0636 -4.7517 1.1035 13 6 -0.6366 -6.0257 1.5005 14 8 -0.0498 -6.5391 2.7253 15 6 -0.5642 -7.6773 3.2171 16 8 -1.4743 -8.2265 2.6428 17 6 -0.0058 -8.2706 4.4848 18 16 -0.9039 -9.7948 4.8859 19 6 -0.1253 -10.3343 6.3716 20 6 0.9199 -9.5986 6.9172 21 6 1.5244 -10.0219 8.0843 22 6 1.0976 -11.1818 8.7048 23 6 0.0611 -11.9193 8.1620 24 6 -0.5510 -11.4999 6.9975 25 6 -0.4118 -3.5334 1.5636 26 6 0.2231 -2.3641 1.2122 27 1 -0.4850 0.8400 0.0004 28 1 2.6871 -3.6942 -0.7377 29 1 1.5341 -5.7607 -0.0794 30 1 -0.5248 -6.7643 0.7066 31 1 -1.6954 -5.8233 1.6618 32 1 1.0510 -8.4981 4.3449 33 1 -0.1188 -7.5565 5.3006 34 1 1.2566 -8.6950 6.4307 35 1 2.3343 -9.4486 8.5108 36 1 1.5750 -11.5126 9.6153 37 1 -0.2693 -12.8249 8.6490 38 1 -1.3600 -12.0765 6.5739 39 1 -1.2811 -3.5021 2.2037 40 1 -0.1462 -1.4163 1.5753 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776216423.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:20 Heat of formation + Delta-G solvation = -44.829739 kcal Electronic energy + Delta-G solvation = -22819.196304 eV Core-core repulsion = 19268.619073 eV Total energy + Delta-G solvation = -3550.577231 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.092 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.23566 -39.21674 -37.75085 -36.21685 -33.92579 -31.88887 -31.26989 -31.02923 -30.10967 -29.41229 -27.14142 -23.97892 -23.12279 -22.91769 -21.19754 -21.10062 -20.11343 -18.35152 -17.53219 -17.43524 -16.58727 -16.50009 -16.20409 -15.41845 -15.27850 -14.88027 -14.42131 -14.34979 -13.94411 -13.77073 -13.56969 -13.55313 -13.12956 -12.81698 -12.50509 -12.27293 -12.08026 -11.85412 -11.60712 -11.50657 -11.29615 -11.15734 -10.71350 -10.69330 -10.47107 -10.41253 -10.26835 -10.08737 -9.75331 -9.52038 -9.33238 -9.25879 -7.67813 -7.61490 -7.51058 -6.91700 -4.50959 0.87094 0.92372 1.02494 2.03794 2.20395 2.39099 2.89550 2.96258 2.99813 3.04821 3.26890 3.37534 3.82183 4.43798 4.49890 4.58635 4.62300 4.75343 4.81917 4.95614 5.05472 5.17390 5.38979 5.55126 5.60183 5.62204 5.63557 5.91553 6.00265 6.03394 6.15914 6.19862 6.26385 6.55531 6.67052 6.82686 6.93040 7.12999 7.21281 7.46752 7.67865 7.83582 7.91169 7.95464 8.14350 8.49033 8.73781 8.81733 10.02365 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.023191 B = 0.001909 C = 0.001822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.065712 B =14661.957042 C =15366.660395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.075 3.925 3 Si 0.910 3.090 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.259 1.259 7 C -0.455 4.455 8 H 0.081 0.919 9 C 0.119 3.881 10 C -0.230 4.230 11 C -0.062 4.062 12 C -0.239 4.239 13 C 0.137 3.863 14 O -0.344 6.344 15 C 0.475 3.525 16 O -0.500 6.500 17 C -0.128 4.128 18 S -0.036 6.036 19 C -0.097 4.097 20 C -0.137 4.137 21 C -0.099 4.099 22 C -0.128 4.128 23 C -0.101 4.101 24 C -0.100 4.100 25 C -0.074 4.074 26 C -0.171 4.171 27 H 0.283 0.717 28 H 0.095 0.905 29 H 0.089 0.911 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.128 0.872 33 H 0.128 0.872 34 H 0.125 0.875 35 H 0.126 0.874 36 H 0.124 0.876 37 H 0.127 0.873 38 H 0.128 0.872 39 H 0.089 0.911 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.792 -16.065 14.051 21.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.144 4.144 3 Si 0.734 3.266 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.183 1.183 7 C -0.484 4.484 8 H 0.099 0.901 9 C 0.116 3.884 10 C -0.250 4.250 11 C -0.081 4.081 12 C -0.240 4.240 13 C 0.065 3.935 14 O -0.261 6.261 15 C 0.316 3.684 16 O -0.389 6.389 17 C -0.276 4.276 18 S 0.208 5.792 19 C -0.210 4.210 20 C -0.161 4.161 21 C -0.118 4.118 22 C -0.149 4.149 23 C -0.121 4.121 24 C -0.124 4.124 25 C -0.093 4.093 26 C -0.190 4.190 27 H 0.094 0.906 28 H 0.114 0.886 29 H 0.107 0.893 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.146 0.854 33 H 0.146 0.854 34 H 0.143 0.857 35 H 0.144 0.856 36 H 0.142 0.858 37 H 0.145 0.855 38 H 0.146 0.854 39 H 0.107 0.893 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -0.630 -16.428 13.070 21.003 hybrid contribution 1.332 1.391 0.618 2.022 sum 0.702 -15.038 13.688 20.346 Atomic orbital electron populations 1.69822 1.07706 1.29600 1.33776 1.25988 0.94775 1.01603 0.92051 0.86267 0.80784 0.80361 0.79204 1.19418 1.19893 1.18280 1.19687 0.98243 0.91220 1.39202 0.90112 1.17703 0.90761 0.92109 0.87797 1.20955 1.03975 0.92780 1.07281 1.20393 0.94255 0.96658 0.96784 1.18635 1.03526 0.91364 1.10479 1.21818 0.96122 0.93927 0.81608 1.86701 1.59704 1.36805 1.42844 1.22306 0.80920 0.80146 0.85044 1.90687 1.28060 1.60784 1.59342 1.23431 1.05298 0.99916 0.98981 1.86176 1.44489 1.24915 1.23628 1.22088 0.99972 0.99168 0.99807 1.21257 0.96768 1.00350 0.97677 1.21100 0.99345 0.96477 0.94905 1.21201 0.97725 0.95591 1.00375 1.21101 0.96007 0.99670 0.95340 1.20741 1.00584 0.95178 0.95888 1.20541 0.98048 0.92547 0.98148 1.21298 0.99435 0.96754 1.01531 0.90577 0.88649 0.89252 0.91788 0.91706 0.85415 0.85397 0.85675 0.85586 0.85818 0.85503 0.85398 0.89271 0.86244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.54 10.97 55.55 0.61 -18.93 16 2 C 0.08 1.81 5.14 -17.34 -0.09 1.72 16 3 Si 0.91 17.88 29.59 -169.99 -5.03 12.85 16 4 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 5 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 6 H -0.26 -5.06 7.11 56.52 0.40 -4.65 16 7 C -0.45 -11.62 9.05 -37.74 -0.34 -11.97 16 8 H 0.08 1.97 7.91 -52.49 -0.41 1.56 16 9 C 0.12 3.08 5.57 -106.82 -0.60 2.49 16 10 C -0.23 -5.50 9.80 -38.87 -0.38 -5.88 16 11 C -0.06 -1.37 9.67 -39.66 -0.38 -1.76 16 12 C -0.24 -5.16 5.54 -104.33 -0.58 -5.74 16 13 C 0.14 2.55 5.58 36.00 0.20 2.75 16 14 O -0.34 -5.99 10.20 -39.26 -0.40 -6.39 16 15 C 0.47 7.29 7.98 36.00 0.29 7.57 16 16 O -0.50 -8.87 15.61 -18.75 -0.29 -9.16 16 17 C -0.13 -1.43 4.93 36.00 0.18 -1.25 16 18 S -0.04 -0.42 21.06 -107.50 -2.26 -2.69 16 19 C -0.10 -1.00 6.11 -39.04 -0.24 -1.23 16 20 C -0.14 -1.25 9.36 -39.36 -0.37 -1.62 16 21 C -0.10 -0.78 10.04 -39.61 -0.40 -1.18 16 22 C -0.13 -0.94 10.04 -39.54 -0.40 -1.33 16 23 C -0.10 -0.76 10.04 -39.61 -0.40 -1.16 16 24 C -0.10 -0.91 9.79 -39.36 -0.39 -1.29 16 25 C -0.07 -1.70 9.67 -39.66 -0.38 -2.08 16 26 C -0.17 -4.31 8.70 -38.87 -0.34 -4.65 16 27 H 0.28 6.38 8.30 -40.82 -0.34 6.04 16 28 H 0.10 2.13 8.06 -52.49 -0.42 1.70 16 29 H 0.09 1.73 8.06 -52.48 -0.42 1.31 16 30 H 0.06 1.13 8.07 -51.93 -0.42 0.71 16 31 H 0.06 1.17 8.07 -51.93 -0.42 0.75 16 32 H 0.13 1.18 7.74 -51.93 -0.40 0.78 16 33 H 0.13 1.20 7.76 -51.92 -0.40 0.79 16 34 H 0.13 1.00 5.88 -52.48 -0.31 0.69 16 35 H 0.13 0.75 8.06 -52.49 -0.42 0.32 16 36 H 0.12 0.62 8.06 -52.48 -0.42 0.20 16 37 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 38 H 0.13 1.02 8.06 -52.49 -0.42 0.59 16 39 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 40 H 0.12 3.09 6.18 -52.49 -0.32 2.77 16 LS Contribution 362.08 15.07 5.46 5.46 Total: -1.00 -28.65 362.08 -11.32 -39.96 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -4.79 Total: 5.53 kcal Atomic # 6 Polarization: -22.01 SS G_CDS: -4.61 Total: -26.62 kcal Atomic # 7 Polarization: -19.54 SS G_CDS: 0.61 Total: -18.93 kcal Atomic # 8 Polarization: -14.86 SS G_CDS: -0.69 Total: -15.55 kcal Atomic # 14 Polarization: 17.88 SS G_CDS: -5.03 Total: 12.85 kcal Atomic # 16 Polarization: -0.42 SS G_CDS: -2.26 Total: -2.69 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -28.65 -11.32 -39.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776216423.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.866 kcal (2) G-P(sol) polarization free energy of solvation -28.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds