Wall clock time and date at job start Tue Mar 31 2020 15:00:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86796 * 120.00114 * 2 1 4 4 H 1.48500 * 109.47276 * 274.66919 * 3 2 1 5 5 H 1.48499 * 109.47133 * 34.66512 * 3 2 1 6 6 H 1.48496 * 109.47413 * 154.66462 * 3 2 1 7 7 C 1.39951 * 119.99953 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00079 * 162.23235 * 7 2 1 9 9 C 1.41398 * 119.99876 * 342.22236 * 7 2 1 10 10 C 1.40723 * 120.24055 * 155.28863 * 9 7 2 11 11 C 1.37610 * 119.73997 * 180.02562 * 10 9 7 12 12 C 1.38635 * 120.25511 * 0.02803 * 11 10 9 13 13 C 1.50698 * 119.75196 * 179.97438 * 12 11 10 14 14 O 1.45198 * 109.47161 * 89.99532 * 13 12 11 15 15 C 1.34231 * 116.99771 * 179.97438 * 14 13 12 16 16 O 1.20824 * 119.99949 * 0.02562 * 15 14 13 17 17 C 1.50696 * 119.99899 * 179.97438 * 15 14 13 18 18 S 1.81407 * 109.47154 * 180.02562 * 17 15 14 19 19 C 1.76203 * 102.99967 * 180.02562 * 18 17 15 20 20 C 1.38974 * 120.07996 * 359.73355 * 19 18 17 21 21 C 1.38086 * 119.91717 * 179.76409 * 20 19 18 22 22 C 1.38299 * 120.07844 * 0.48333 * 21 20 19 23 23 C 1.38301 * 120.16506 * 359.76566 * 22 21 20 24 24 C 1.38085 * 120.07861 * 0.02562 * 23 22 21 25 25 C 1.38634 * 120.49962 * 0.25044 * 12 11 10 26 26 C 1.37621 * 120.24547 * 359.44337 * 25 12 11 27 27 H 0.96999 * 120.00031 * 359.97438 * 1 2 3 28 28 H 1.08000 * 120.12332 * 0.02562 * 10 9 7 29 29 H 1.08004 * 119.87266 * 180.02562 * 11 10 9 30 30 H 1.09003 * 109.46896 * 329.99827 * 13 12 11 31 31 H 1.08999 * 109.46922 * 210.00228 * 13 12 11 32 32 H 1.08997 * 109.47878 * 300.00566 * 17 15 14 33 33 H 1.09003 * 109.46883 * 60.00914 * 17 15 14 34 34 H 1.08003 * 120.04042 * 359.97438 * 20 19 18 35 35 H 1.08001 * 119.96011 * 180.22933 * 21 20 19 36 36 H 1.08006 * 119.91714 * 179.74805 * 22 21 20 37 37 H 1.08000 * 119.96590 * 179.97438 * 23 22 21 38 38 H 1.07999 * 120.04281 * 179.97438 * 24 23 22 39 39 H 1.07997 * 119.88063 * 179.70938 * 25 12 11 40 40 H 1.08001 * 120.13177 * 180.27444 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3911 2.1034 -1.3954 5 1 1.4925 2.6221 0.7963 6 1 3.5856 1.4137 0.5991 7 6 2.0080 -1.2120 -0.0005 8 1 3.0494 -1.2342 -0.2860 9 6 1.3516 -2.4075 0.3728 10 6 1.8218 -3.6494 -0.0929 11 6 1.1748 -4.8064 0.2765 12 6 0.0636 -4.7517 1.1035 13 6 -0.6366 -6.0257 1.5005 14 8 -0.0498 -6.5391 2.7253 15 6 -0.5642 -7.6773 3.2171 16 8 -1.4743 -8.2265 2.6428 17 6 -0.0058 -8.2706 4.4848 18 16 -0.9039 -9.7948 4.8859 19 6 -0.1253 -10.3343 6.3716 20 6 0.9199 -9.5986 6.9172 21 6 1.5244 -10.0219 8.0843 22 6 1.0976 -11.1818 8.7048 23 6 0.0611 -11.9193 8.1620 24 6 -0.5510 -11.4999 6.9975 25 6 -0.4118 -3.5334 1.5636 26 6 0.2231 -2.3641 1.2122 27 1 -0.4850 0.8400 0.0004 28 1 2.6871 -3.6942 -0.7377 29 1 1.5341 -5.7607 -0.0794 30 1 -0.5248 -6.7643 0.7066 31 1 -1.6954 -5.8233 1.6618 32 1 1.0510 -8.4981 4.3449 33 1 -0.1188 -7.5565 5.3006 34 1 1.2566 -8.6950 6.4307 35 1 2.3343 -9.4486 8.5108 36 1 1.5750 -11.5126 9.6153 37 1 -0.2693 -12.8249 8.6490 38 1 -1.3600 -12.0765 6.5739 39 1 -1.2811 -3.5021 2.2037 40 1 -0.1462 -1.4163 1.5753 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776216423.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:19 Heat of formation + Delta-G solvation = -55.792302 kcal Electronic energy + Delta-G solvation = -22819.671676 eV Core-core repulsion = 19268.619073 eV Total energy + Delta-G solvation = -3551.052603 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.092 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.56291 -39.81908 -39.51284 -37.63490 -35.70883 -32.92731 -32.34579 -31.87482 -31.28891 -31.11719 -28.81853 -25.65045 -23.82039 -23.56216 -22.97758 -22.39006 -21.83245 -19.29342 -19.22543 -18.66274 -17.78457 -17.57522 -17.20863 -17.06138 -16.05282 -15.89830 -15.73386 -15.62621 -15.55728 -14.83881 -14.52379 -14.39340 -14.24714 -14.00476 -13.99257 -13.87478 -13.57616 -13.30214 -13.07000 -12.79432 -12.49699 -12.43468 -12.24193 -12.07547 -11.77109 -11.75445 -11.49670 -11.31362 -11.24973 -11.04811 -10.76241 -9.94014 -9.45804 -9.35999 -8.70939 -8.49824 -6.41233 0.02746 0.24088 0.41704 0.74700 0.99100 1.09592 1.23561 1.37989 1.42660 1.53463 1.87010 2.18553 2.68653 2.77046 3.51212 3.75721 3.79607 3.91328 3.99109 4.04079 4.08268 4.10261 4.26088 4.45945 4.47363 4.51227 4.53515 4.57266 4.79561 4.99165 5.07097 5.10425 5.28084 5.29863 5.34780 5.38619 5.45958 5.57501 5.63352 5.86013 5.98768 6.04033 6.11918 6.30179 6.54945 6.62529 6.86784 6.95152 8.26066 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.023191 B = 0.001909 C = 0.001822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.065712 B =14661.957042 C =15366.660395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.035 3.965 3 Si 0.984 3.016 4 H -0.262 1.262 5 H -0.265 1.265 6 H -0.257 1.257 7 C -0.492 4.492 8 H 0.080 0.920 9 C 0.088 3.912 10 C -0.245 4.245 11 C -0.064 4.064 12 C -0.232 4.232 13 C 0.142 3.858 14 O -0.351 6.351 15 C 0.476 3.524 16 O -0.525 6.525 17 C -0.115 4.115 18 S -0.077 6.077 19 C -0.110 4.110 20 C -0.148 4.148 21 C -0.106 4.106 22 C -0.127 4.127 23 C -0.104 4.104 24 C -0.114 4.114 25 C -0.079 4.079 26 C -0.194 4.194 27 H 0.291 0.709 28 H 0.103 0.897 29 H 0.119 0.881 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.151 0.849 33 H 0.149 0.851 34 H 0.134 0.866 35 H 0.147 0.853 36 H 0.150 0.850 37 H 0.151 0.849 38 H 0.131 0.869 39 H 0.107 0.893 40 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.739 -17.123 15.746 23.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.181 4.181 3 Si 0.804 3.196 4 H -0.186 1.186 5 H -0.190 1.190 6 H -0.181 1.181 7 C -0.520 4.520 8 H 0.098 0.902 9 C 0.085 3.915 10 C -0.265 4.265 11 C -0.082 4.082 12 C -0.233 4.233 13 C 0.070 3.930 14 O -0.268 6.268 15 C 0.319 3.681 16 O -0.415 6.415 17 C -0.263 4.263 18 S 0.166 5.834 19 C -0.222 4.222 20 C -0.172 4.172 21 C -0.126 4.126 22 C -0.148 4.148 23 C -0.123 4.123 24 C -0.138 4.138 25 C -0.098 4.098 26 C -0.214 4.214 27 H 0.102 0.898 28 H 0.121 0.879 29 H 0.137 0.863 30 H 0.093 0.907 31 H 0.088 0.912 32 H 0.168 0.832 33 H 0.167 0.833 34 H 0.152 0.848 35 H 0.164 0.836 36 H 0.168 0.832 37 H 0.169 0.831 38 H 0.149 0.851 39 H 0.125 0.875 40 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 0.318 -17.512 14.780 22.918 hybrid contribution 0.990 1.486 0.204 1.797 sum 1.309 -16.026 14.984 21.979 Atomic orbital electron populations 1.69868 1.09120 1.30916 1.34413 1.26835 0.95512 1.04745 0.91026 0.85162 0.79228 0.75711 0.79475 1.18636 1.18984 1.18098 1.19933 0.98540 0.92381 1.41194 0.90157 1.18065 0.91556 0.93253 0.88622 1.21171 1.04653 0.92932 1.07698 1.20718 0.93969 0.97307 0.96247 1.18947 1.02859 0.92281 1.09225 1.21618 0.95888 0.92856 0.82652 1.86649 1.59874 1.37970 1.42265 1.22940 0.80327 0.79059 0.85753 1.90683 1.29249 1.61212 1.60350 1.23407 1.05955 0.99758 0.97157 1.86274 1.45805 1.25677 1.25635 1.22050 1.00856 1.00105 0.99213 1.21471 0.96663 1.00717 0.98329 1.21429 0.99711 0.96938 0.94478 1.21594 0.97201 0.95026 1.00949 1.21431 0.95741 1.00476 0.94689 1.20962 1.01078 0.95124 0.96628 1.20781 0.98395 0.92435 0.98157 1.21273 1.00363 0.97025 1.02715 0.89837 0.87854 0.86312 0.90677 0.91219 0.83163 0.83314 0.84827 0.83573 0.83246 0.83100 0.85113 0.87510 0.87802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.82 10.97 21.83 0.24 -41.58 16 2 C 0.03 1.71 5.14 85.26 0.44 2.15 16 3 Si 0.98 36.94 29.59 68.60 2.03 38.97 16 4 H -0.26 -9.44 7.11 99.48 0.71 -8.74 16 5 H -0.27 -9.49 7.11 99.48 0.71 -8.78 16 6 H -0.26 -9.48 7.11 99.48 0.71 -8.77 16 7 C -0.49 -25.92 9.05 23.46 0.21 -25.70 16 8 H 0.08 4.05 7.91 -2.91 -0.02 4.03 16 9 C 0.09 4.66 5.57 -21.29 -0.12 4.54 16 10 C -0.25 -11.81 9.80 22.73 0.22 -11.58 16 11 C -0.06 -2.76 9.67 22.22 0.21 -2.55 16 12 C -0.23 -9.83 5.54 -19.68 -0.11 -9.93 16 13 C 0.14 5.06 5.58 71.24 0.40 5.46 16 14 O -0.35 -11.61 10.20 -51.42 -0.52 -12.13 16 15 C 0.48 13.93 7.98 71.23 0.57 14.50 16 16 O -0.53 -18.16 15.61 21.97 0.34 -17.82 16 17 C -0.11 -2.37 4.93 71.23 0.35 -2.02 16 18 S -0.08 -1.75 21.06 -56.49 -1.19 -2.94 16 19 C -0.11 -2.11 6.11 22.62 0.14 -1.97 16 20 C -0.15 -2.43 9.36 22.41 0.21 -2.22 16 21 C -0.11 -1.40 10.04 22.25 0.22 -1.18 16 22 C -0.13 -1.48 10.04 22.30 0.22 -1.26 16 23 C -0.10 -1.32 10.04 22.25 0.22 -1.09 16 24 C -0.11 -1.93 9.79 22.41 0.22 -1.71 16 25 C -0.08 -3.64 9.67 22.22 0.21 -3.43 16 26 C -0.19 -10.10 8.70 22.73 0.20 -9.91 16 27 H 0.29 13.35 8.30 -92.71 -0.77 12.58 16 28 H 0.10 4.66 8.06 -2.91 -0.02 4.63 16 29 H 0.12 4.34 8.06 -2.91 -0.02 4.32 16 30 H 0.07 2.52 8.07 -2.39 -0.02 2.50 16 31 H 0.07 2.41 8.07 -2.39 -0.02 2.39 16 32 H 0.15 2.42 7.74 -2.39 -0.02 2.40 16 33 H 0.15 2.45 7.76 -2.39 -0.02 2.43 16 34 H 0.13 1.83 5.88 -2.91 -0.02 1.82 16 35 H 0.15 1.27 8.06 -2.91 -0.02 1.25 16 36 H 0.15 0.93 8.06 -2.91 -0.02 0.90 16 37 H 0.15 1.10 8.06 -2.91 -0.02 1.08 16 38 H 0.13 2.00 8.06 -2.91 -0.02 1.98 16 39 H 0.11 4.40 8.06 -2.91 -0.02 4.38 16 40 H 0.10 5.62 6.18 -2.91 -0.02 5.61 16 Total: -1.00 -63.16 362.08 5.78 -57.38 By element: Atomic # 1 Polarization: 24.96 SS G_CDS: 1.05 Total: 26.02 kcal Atomic # 6 Polarization: -51.72 SS G_CDS: 3.83 Total: -47.90 kcal Atomic # 7 Polarization: -41.82 SS G_CDS: 0.24 Total: -41.58 kcal Atomic # 8 Polarization: -29.77 SS G_CDS: -0.18 Total: -29.95 kcal Atomic # 14 Polarization: 36.94 SS G_CDS: 2.03 Total: 38.97 kcal Atomic # 16 Polarization: -1.75 SS G_CDS: -1.19 Total: -2.94 kcal Total: -63.16 5.78 -57.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776216423.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.587 kcal (2) G-P(sol) polarization free energy of solvation -63.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds