Wall clock time and date at job start Tue Mar 31 2020 15:41:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50711 * 1 3 3 N 1.30801 * 123.00173 * 2 1 4 4 C 1.30165 * 117.30706 * 179.97438 * 3 2 1 5 5 N 1.38344 * 124.73104 * 180.02562 * 4 3 2 6 6 C 1.34777 * 119.99890 * 179.97438 * 5 4 3 7 7 O 1.21493 * 120.00329 * 359.97438 * 6 5 4 8 8 O 1.34629 * 119.99454 * 179.72253 * 6 5 4 9 9 C 1.45202 * 116.99558 * 180.27361 * 8 6 5 10 10 C 1.53005 * 109.47433 * 59.99952 * 9 8 6 11 11 C 1.53008 * 109.46858 * 179.97438 * 9 8 6 12 12 C 1.52994 * 109.47273 * 299.99866 * 9 8 6 13 13 S 1.70914 * 110.54172 * 0.26015 * 4 3 2 14 14 C 1.36910 * 123.00494 * 179.97438 * 2 1 3 15 15 C 1.41796 * 126.13215 * 0.03437 * 14 2 1 16 16 O 1.21699 * 119.99542 * 0.02562 * 15 14 2 17 17 O 1.34936 * 119.99966 * 179.97438 * 15 14 2 18 18 C 1.34859 * 116.99824 * 180.02562 * 17 15 14 19 19 H 1.08007 * 120.00177 * 359.97438 * 18 17 15 20 20 C 1.38767 * 120.00077 * 180.02562 * 18 17 15 21 21 N 1.31448 * 119.99876 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 119.99940 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47474 * 359.97438 * 22 20 18 24 24 H 1.48493 * 109.47458 * 119.99679 * 22 20 18 25 25 H 1.48505 * 109.46881 * 239.99577 * 22 20 18 26 26 H 1.09000 * 109.46709 * 90.02463 * 1 2 3 27 27 H 1.08999 * 109.46976 * 210.02137 * 1 2 3 28 28 H 1.08996 * 109.46829 * 330.02386 * 1 2 3 29 29 H 0.97000 * 119.99626 * 359.97438 * 5 4 3 30 30 H 1.08998 * 109.47018 * 59.99670 * 10 9 8 31 31 H 1.08999 * 109.47044 * 179.97438 * 10 9 8 32 32 H 1.08995 * 109.46463 * 299.99998 * 10 9 8 33 33 H 1.08996 * 109.46984 * 60.00080 * 11 9 8 34 34 H 1.09005 * 109.46864 * 179.97438 * 11 9 8 35 35 H 1.08998 * 109.47272 * 300.00133 * 11 9 8 36 36 H 1.09001 * 109.47516 * 59.99959 * 12 9 8 37 37 H 1.08999 * 109.47211 * 180.02562 * 12 9 8 38 38 H 1.09010 * 109.46887 * 300.00170 * 12 9 8 39 39 H 0.96998 * 119.99663 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2195 1.0970 0.0000 4 6 3.5148 0.9678 0.0005 5 7 4.4119 2.0209 0.0011 6 6 5.7374 1.7770 0.0021 7 8 6.1445 0.6323 0.0030 8 8 6.6103 2.8019 -0.0029 9 6 8.0226 2.4648 -0.0076 10 6 8.3466 1.6426 -1.2567 11 6 8.8536 3.7495 -0.0137 12 6 8.3560 1.6471 1.2417 13 16 3.9527 -0.6843 -0.0062 14 6 2.2529 -1.1482 0.0005 15 6 1.7479 -2.4732 0.0004 16 8 0.5463 -2.6663 -0.0006 17 8 2.5996 -3.5198 0.0005 18 6 2.0540 -4.7531 -0.0002 19 1 0.9801 -4.8685 -0.0003 20 6 2.8723 -5.8738 0.0004 21 7 4.1792 -5.7333 0.0010 22 14 2.1165 -7.5820 0.0002 23 1 0.6359 -7.4683 0.0001 24 1 2.5569 -8.3181 -1.2120 25 1 2.5560 -8.3178 1.2130 26 1 -0.3633 -0.0004 -1.0277 27 1 -0.3633 -0.8898 0.5142 28 1 -0.3633 0.8902 0.5135 29 1 4.0868 2.9349 0.0008 30 1 8.1092 2.2251 -2.1468 31 1 9.4069 1.3899 -1.2604 32 1 7.7546 0.7274 -1.2528 33 1 8.6229 4.3356 0.8759 34 1 9.9139 3.4964 -0.0167 35 1 8.6161 4.3317 -0.9040 36 1 7.7640 0.7318 1.2457 37 1 9.4163 1.3944 1.2384 38 1 8.1252 2.2329 2.1316 39 1 4.7512 -6.5167 0.0010 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000782423387.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:44 Heat of formation + Delta-G solvation = -106.522456 kcal Electronic energy + Delta-G solvation = -25566.036790 eV Core-core repulsion = 21601.935099 eV Total energy + Delta-G solvation = -3964.101691 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 3.43 seconds Orbital eigenvalues (eV) -41.38758 -39.86860 -38.77595 -37.78080 -35.51651 -35.01184 -34.18521 -32.21872 -30.74097 -28.38796 -27.72726 -27.63615 -25.41413 -25.01121 -22.48727 -22.03306 -20.66303 -19.40768 -18.47313 -17.93918 -17.70411 -16.84430 -16.77349 -16.09292 -15.86000 -15.21961 -14.96712 -14.69132 -14.42720 -14.21604 -14.02508 -13.83035 -13.23796 -12.85656 -12.79030 -12.48570 -12.34971 -12.28485 -12.22393 -12.06317 -11.82526 -11.76040 -11.64336 -11.29449 -10.99143 -10.77726 -10.72277 -10.43672 -10.42512 -10.11558 -9.82032 -9.61402 -8.97296 -8.89699 -8.62968 -7.95537 -6.48198 -4.08022 0.60480 1.24748 1.61744 2.22714 2.25567 2.94362 3.14902 3.17693 3.25458 3.62043 3.94707 3.99256 4.37590 4.43636 4.57810 4.63258 4.76450 5.11726 5.16950 5.21250 5.25451 5.41103 5.47403 5.50961 5.58467 5.61865 5.70066 6.00103 6.05228 6.07144 6.07998 6.20172 6.28589 6.62429 6.70445 6.91849 7.34931 7.80462 7.88712 7.94656 8.67590 8.99457 9.78272 10.68898 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.014750 B = 0.003441 C = 0.002846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.890598 B = 8135.598647 C = 9837.119325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.149 3.851 3 N -0.510 5.510 4 C 0.217 3.783 5 N -0.598 5.598 6 C 0.652 3.348 7 O -0.526 6.526 8 O -0.351 6.351 9 C 0.135 3.865 10 C -0.188 4.188 11 C -0.140 4.140 12 C -0.188 4.188 13 S 0.344 5.656 14 C -0.300 4.300 15 C 0.469 3.531 16 O -0.545 6.545 17 O -0.207 6.207 18 C -0.366 4.366 19 H 0.101 0.899 20 C 0.039 3.961 21 N -0.853 5.853 22 Si 0.945 3.055 23 H -0.264 1.264 24 H -0.275 1.275 25 H -0.275 1.275 26 H 0.075 0.925 27 H 0.103 0.897 28 H 0.066 0.934 29 H 0.425 0.575 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.091 0.909 33 H 0.068 0.932 34 H 0.084 0.916 35 H 0.068 0.932 36 H 0.091 0.909 37 H 0.075 0.925 38 H 0.062 0.938 39 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.111 18.097 0.014 20.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.010 3.990 3 N -0.234 5.234 4 C -0.145 4.145 5 N -0.253 5.253 6 C 0.404 3.596 7 O -0.413 6.413 8 O -0.266 6.266 9 C 0.099 3.901 10 C -0.245 4.245 11 C -0.197 4.197 12 C -0.245 4.245 13 S 0.597 5.403 14 C -0.423 4.423 15 C 0.318 3.682 16 O -0.445 6.445 17 O -0.114 6.114 18 C -0.443 4.443 19 H 0.119 0.881 20 C -0.166 4.166 21 N -0.489 5.489 22 Si 0.770 3.230 23 H -0.188 1.188 24 H -0.201 1.201 25 H -0.201 1.201 26 H 0.094 0.906 27 H 0.121 0.879 28 H 0.085 0.915 29 H 0.264 0.736 30 H 0.081 0.919 31 H 0.094 0.906 32 H 0.110 0.890 33 H 0.087 0.913 34 H 0.102 0.898 35 H 0.087 0.913 36 H 0.110 0.890 37 H 0.094 0.906 38 H 0.081 0.919 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 10.240 17.453 0.006 20.235 hybrid contribution -1.245 -0.138 -0.023 1.253 sum 8.994 17.315 -0.016 19.512 Atomic orbital electron populations 1.20582 0.86093 1.04019 1.03291 1.20316 0.97688 0.83886 0.97135 1.65784 1.02088 1.32991 1.22489 1.23296 0.90725 0.94510 1.05953 1.40750 1.01870 1.09381 1.73294 1.17766 0.81392 0.83740 0.76665 1.90934 1.76450 1.20655 1.53216 1.86304 1.18683 1.35341 1.86231 1.22276 0.74065 0.96589 0.97171 1.22564 1.03650 1.02203 0.96060 1.21873 0.98924 0.95411 1.03497 1.22564 1.03623 1.02234 0.96056 1.85452 1.00422 0.91234 1.63224 1.24515 0.99520 0.97584 1.20699 1.17835 0.85350 0.84384 0.80630 1.90632 1.15856 1.85579 1.52413 1.83977 1.37919 1.14579 1.74956 1.21401 0.93905 0.78434 1.50528 0.88136 1.25419 0.95261 0.99660 0.96274 1.70013 1.02892 1.31100 1.44943 0.85569 0.79410 0.79865 0.78190 1.18765 1.20076 1.20077 0.90641 0.87867 0.91541 0.73590 0.91944 0.90613 0.89002 0.91338 0.89764 0.91330 0.88991 0.90617 0.91944 0.91862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.38 9.67 36.01 0.35 -1.04 16 2 C 0.15 2.90 6.83 -83.51 -0.57 2.33 16 3 N -0.51 -8.99 10.53 -10.79 -0.11 -9.10 16 4 C 0.22 3.60 8.16 -87.55 -0.71 2.88 16 5 N -0.60 -7.71 5.38 -17.60 -0.09 -7.81 16 6 C 0.65 8.51 8.01 54.06 0.43 8.94 16 7 O -0.53 -8.06 9.30 -19.27 -0.18 -8.23 16 8 O -0.35 -3.78 9.94 -40.30 -0.40 -4.18 16 9 C 0.14 1.22 1.13 -90.62 -0.10 1.12 16 10 C -0.19 -1.75 8.37 37.16 0.31 -1.43 16 11 C -0.14 -0.85 8.85 37.16 0.33 -0.52 16 12 C -0.19 -1.74 8.37 37.15 0.31 -1.43 16 13 S 0.34 6.66 19.93 -107.50 -2.14 4.52 16 14 C -0.30 -6.62 6.33 -38.70 -0.24 -6.87 16 15 C 0.47 12.29 7.68 32.09 0.25 12.54 16 16 O -0.54 -14.69 13.41 -19.42 -0.26 -14.95 16 17 O -0.21 -6.05 9.54 -22.21 -0.21 -6.26 16 18 C -0.37 -10.78 9.65 30.93 0.30 -10.49 16 19 H 0.10 2.95 6.86 -52.48 -0.36 2.59 16 20 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 21 N -0.85 -24.77 13.67 55.48 0.76 -24.01 16 22 Si 0.95 21.04 29.55 -169.99 -5.02 16.01 16 23 H -0.26 -5.77 7.11 56.52 0.40 -5.37 16 24 H -0.28 -5.93 7.11 56.52 0.40 -5.52 16 25 H -0.28 -5.93 7.11 56.52 0.40 -5.52 16 26 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 27 H 0.10 1.96 6.00 -51.93 -0.31 1.65 16 28 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 29 H 0.43 4.23 8.93 -40.82 -0.36 3.86 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.09 1.11 5.88 -51.93 -0.31 0.80 16 33 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 35 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.09 1.11 5.88 -51.93 -0.31 0.80 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 39 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 346.27 15.07 5.22 5.22 Total: -1.00 -33.42 346.27 -6.49 -39.91 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: -4.59 Total: 1.86 kcal Atomic # 6 Polarization: 6.47 SS G_CDS: 0.55 Total: 7.02 kcal Atomic # 7 Polarization: -41.47 SS G_CDS: 0.55 Total: -40.92 kcal Atomic # 8 Polarization: -32.57 SS G_CDS: -1.05 Total: -33.62 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 16 Polarization: 6.66 SS G_CDS: -2.14 Total: 4.52 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -33.42 -6.49 -39.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782423387.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.612 kcal (2) G-P(sol) polarization free energy of solvation -33.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.43 seconds