Wall clock time and date at job start Tue Mar 31 2020 15:41:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50711 * 1 3 3 N 1.30801 * 123.00173 * 2 1 4 4 C 1.30165 * 117.30706 * 179.97438 * 3 2 1 5 5 N 1.38344 * 124.73104 * 180.02562 * 4 3 2 6 6 C 1.34777 * 119.99890 * 179.97438 * 5 4 3 7 7 O 1.21493 * 120.00329 * 359.97438 * 6 5 4 8 8 O 1.34629 * 119.99454 * 179.72253 * 6 5 4 9 9 C 1.45202 * 116.99558 * 180.27361 * 8 6 5 10 10 C 1.53005 * 109.47433 * 59.99952 * 9 8 6 11 11 C 1.53008 * 109.46858 * 179.97438 * 9 8 6 12 12 C 1.52994 * 109.47273 * 299.99866 * 9 8 6 13 13 S 1.70914 * 110.54172 * 0.26015 * 4 3 2 14 14 C 1.36910 * 123.00494 * 179.97438 * 2 1 3 15 15 C 1.41796 * 126.13215 * 0.03437 * 14 2 1 16 16 O 1.21699 * 119.99542 * 0.02562 * 15 14 2 17 17 O 1.34936 * 119.99966 * 179.97438 * 15 14 2 18 18 C 1.34859 * 116.99824 * 180.02562 * 17 15 14 19 19 H 1.08007 * 120.00177 * 359.97438 * 18 17 15 20 20 C 1.38767 * 120.00077 * 180.02562 * 18 17 15 21 21 N 1.31448 * 119.99876 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 119.99940 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47474 * 359.97438 * 22 20 18 24 24 H 1.48493 * 109.47458 * 119.99679 * 22 20 18 25 25 H 1.48505 * 109.46881 * 239.99577 * 22 20 18 26 26 H 1.09000 * 109.46709 * 90.02463 * 1 2 3 27 27 H 1.08999 * 109.46976 * 210.02137 * 1 2 3 28 28 H 1.08996 * 109.46829 * 330.02386 * 1 2 3 29 29 H 0.97000 * 119.99626 * 359.97438 * 5 4 3 30 30 H 1.08998 * 109.47018 * 59.99670 * 10 9 8 31 31 H 1.08999 * 109.47044 * 179.97438 * 10 9 8 32 32 H 1.08995 * 109.46463 * 299.99998 * 10 9 8 33 33 H 1.08996 * 109.46984 * 60.00080 * 11 9 8 34 34 H 1.09005 * 109.46864 * 179.97438 * 11 9 8 35 35 H 1.08998 * 109.47272 * 300.00133 * 11 9 8 36 36 H 1.09001 * 109.47516 * 59.99959 * 12 9 8 37 37 H 1.08999 * 109.47211 * 180.02562 * 12 9 8 38 38 H 1.09010 * 109.46887 * 300.00170 * 12 9 8 39 39 H 0.96998 * 119.99663 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2195 1.0970 0.0000 4 6 3.5148 0.9678 0.0005 5 7 4.4119 2.0209 0.0011 6 6 5.7374 1.7770 0.0021 7 8 6.1445 0.6323 0.0030 8 8 6.6103 2.8019 -0.0029 9 6 8.0226 2.4648 -0.0076 10 6 8.3466 1.6426 -1.2567 11 6 8.8536 3.7495 -0.0137 12 6 8.3560 1.6471 1.2417 13 16 3.9527 -0.6843 -0.0062 14 6 2.2529 -1.1482 0.0005 15 6 1.7479 -2.4732 0.0004 16 8 0.5463 -2.6663 -0.0006 17 8 2.5996 -3.5198 0.0005 18 6 2.0540 -4.7531 -0.0002 19 1 0.9801 -4.8685 -0.0003 20 6 2.8723 -5.8738 0.0004 21 7 4.1792 -5.7333 0.0010 22 14 2.1165 -7.5820 0.0002 23 1 0.6359 -7.4683 0.0001 24 1 2.5569 -8.3181 -1.2120 25 1 2.5560 -8.3178 1.2130 26 1 -0.3633 -0.0004 -1.0277 27 1 -0.3633 -0.8898 0.5142 28 1 -0.3633 0.8902 0.5135 29 1 4.0868 2.9349 0.0008 30 1 8.1092 2.2251 -2.1468 31 1 9.4069 1.3899 -1.2604 32 1 7.7546 0.7274 -1.2528 33 1 8.6229 4.3356 0.8759 34 1 9.9139 3.4964 -0.0167 35 1 8.6161 4.3317 -0.9040 36 1 7.7640 0.7318 1.2457 37 1 9.4163 1.3944 1.2384 38 1 8.1252 2.2329 2.1316 39 1 4.7512 -6.5167 0.0010 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000782423387.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:40 Heat of formation + Delta-G solvation = -129.233312 kcal Electronic energy + Delta-G solvation = -25567.021607 eV Core-core repulsion = 21601.935099 eV Total energy + Delta-G solvation = -3965.086508 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 2.17 seconds Orbital eigenvalues (eV) -42.47113 -41.52141 -40.57225 -38.89388 -37.31003 -36.49058 -35.04957 -34.32410 -32.24154 -30.04428 -28.38136 -28.30915 -27.35854 -26.41695 -23.89376 -23.52862 -21.91748 -20.63728 -20.11310 -19.64326 -19.35433 -18.12869 -17.87763 -17.66726 -17.28126 -16.89219 -16.38716 -16.06395 -15.93972 -15.79622 -15.35610 -14.83291 -14.56697 -14.39864 -13.96813 -13.72160 -13.53126 -13.39097 -13.19736 -13.17349 -13.01576 -12.95161 -12.81469 -12.62143 -12.42850 -12.22170 -12.09278 -11.97457 -11.96950 -11.54184 -11.25621 -11.21914 -10.89846 -10.71250 -10.47006 -9.48297 -8.55421 -6.31344 -0.95309 -0.19865 0.37647 0.72153 0.92144 1.35239 1.38012 1.54539 1.56273 2.08740 2.12286 2.54591 2.87830 2.99986 3.29772 3.67694 3.74808 3.90013 3.93316 4.26324 4.44826 4.62617 4.65932 4.73037 4.75380 4.77180 4.77415 4.85088 4.87633 4.89036 5.14498 5.16601 5.22258 5.28713 5.30022 5.40326 5.63112 5.81270 6.40410 6.58966 6.73437 6.88583 7.69904 8.65371 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.014750 B = 0.003441 C = 0.002846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.890598 B = 8135.598647 C = 9837.119325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.180 3.820 3 N -0.510 5.510 4 C 0.262 3.738 5 N -0.583 5.583 6 C 0.654 3.346 7 O -0.544 6.544 8 O -0.340 6.340 9 C 0.125 3.875 10 C -0.187 4.187 11 C -0.134 4.134 12 C -0.187 4.187 13 S 0.322 5.678 14 C -0.360 4.360 15 C 0.478 3.522 16 O -0.561 6.561 17 O -0.239 6.239 18 C -0.413 4.413 19 H 0.088 0.912 20 C -0.006 4.006 21 N -0.899 5.899 22 Si 1.021 2.979 23 H -0.262 1.262 24 H -0.260 1.260 25 H -0.260 1.260 26 H 0.090 0.910 27 H 0.081 0.919 28 H 0.100 0.900 29 H 0.444 0.556 30 H 0.068 0.932 31 H 0.095 0.905 32 H 0.059 0.941 33 H 0.074 0.926 34 H 0.105 0.895 35 H 0.074 0.926 36 H 0.059 0.941 37 H 0.095 0.905 38 H 0.069 0.931 39 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.949 20.530 -0.032 22.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.039 3.961 3 N -0.233 5.233 4 C -0.102 4.102 5 N -0.240 5.240 6 C 0.407 3.593 7 O -0.432 6.432 8 O -0.253 6.253 9 C 0.090 3.910 10 C -0.244 4.244 11 C -0.191 4.191 12 C -0.244 4.244 13 S 0.576 5.424 14 C -0.482 4.482 15 C 0.327 3.673 16 O -0.462 6.462 17 O -0.148 6.148 18 C -0.489 4.489 19 H 0.106 0.894 20 C -0.206 4.206 21 N -0.536 5.536 22 Si 0.839 3.161 23 H -0.185 1.185 24 H -0.184 1.184 25 H -0.184 1.184 26 H 0.108 0.892 27 H 0.100 0.900 28 H 0.119 0.881 29 H 0.287 0.713 30 H 0.087 0.913 31 H 0.114 0.886 32 H 0.078 0.922 33 H 0.093 0.907 34 H 0.124 0.876 35 H 0.093 0.907 36 H 0.078 0.922 37 H 0.114 0.886 38 H 0.088 0.912 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 11.106 19.943 -0.039 22.827 hybrid contribution -1.376 -0.467 -0.008 1.453 sum 9.731 19.476 -0.047 21.771 Atomic orbital electron populations 1.20658 0.84430 1.04585 1.04323 1.20794 0.98847 0.83404 0.93052 1.65977 1.01938 1.31493 1.23922 1.23429 0.90875 0.94441 1.01474 1.40761 1.01574 1.09350 1.72335 1.17921 0.81504 0.83900 0.76006 1.90959 1.76646 1.21915 1.53634 1.86362 1.19389 1.34028 1.85544 1.22680 0.73147 0.98390 0.96801 1.22552 1.04404 1.00883 0.96584 1.21912 0.99328 0.93668 1.04174 1.22552 1.04373 1.00914 0.96580 1.85625 0.99292 0.93213 1.64317 1.24283 1.01340 0.96341 1.26278 1.18451 0.85131 0.85318 0.78356 1.90590 1.16527 1.86332 1.52704 1.84000 1.38792 1.15117 1.76844 1.21577 0.93786 0.79450 1.54077 0.89387 1.26618 0.95670 1.03642 0.94700 1.70104 1.04356 1.32838 1.46284 0.84522 0.78422 0.73907 0.79209 1.18538 1.18430 1.18439 0.89160 0.90009 0.88134 0.71325 0.91252 0.88625 0.92176 0.90671 0.87634 0.90667 0.92163 0.88630 0.91248 0.91089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.67 9.67 71.24 0.69 -1.98 16 2 C 0.18 6.86 6.83 42.40 0.29 7.15 16 3 N -0.51 -16.93 10.53 -188.06 -1.98 -18.91 16 4 C 0.26 8.29 8.16 179.27 1.46 9.75 16 5 N -0.58 -13.70 5.38 -440.01 -2.37 -16.07 16 6 C 0.65 16.04 8.01 129.79 1.04 17.08 16 7 O -0.54 -16.56 9.30 19.86 0.18 -16.37 16 8 O -0.34 -6.50 9.94 -55.38 -0.55 -7.05 16 9 C 0.13 1.98 1.13 -10.79 -0.01 1.97 16 10 C -0.19 -3.18 8.37 71.98 0.60 -2.58 16 11 C -0.13 -1.16 8.85 71.98 0.64 -0.52 16 12 C -0.19 -3.18 8.37 71.98 0.60 -2.57 16 13 S 0.32 12.77 19.93 -56.49 -1.13 11.64 16 14 C -0.36 -16.32 6.33 22.84 0.14 -16.17 16 15 C 0.48 26.28 7.68 68.70 0.53 26.81 16 16 O -0.56 -31.64 13.41 19.19 0.26 -31.38 16 17 O -0.24 -14.82 9.54 9.20 0.09 -14.74 16 18 C -0.41 -25.69 9.65 67.95 0.66 -25.04 16 19 H 0.09 5.48 6.86 -2.91 -0.02 5.46 16 20 C -0.01 -0.34 5.49 84.88 0.47 0.13 16 21 N -0.90 -54.16 13.67 21.63 0.30 -53.87 16 22 Si 1.02 44.04 29.55 68.60 2.03 46.07 16 23 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 24 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 25 H -0.26 -10.47 7.11 99.48 0.71 -9.77 16 26 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 27 H 0.08 3.11 6.00 -2.39 -0.01 3.10 16 28 H 0.10 2.61 8.14 -2.39 -0.02 2.59 16 29 H 0.44 7.35 8.93 -92.71 -0.83 6.52 16 30 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.10 1.21 8.14 -2.39 -0.02 1.20 16 32 H 0.06 1.44 5.88 -2.39 -0.01 1.43 16 33 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.11 0.51 8.14 -2.38 -0.02 0.49 16 35 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.06 1.44 5.88 -2.39 -0.01 1.43 16 37 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 39 H 0.28 15.19 8.31 -92.71 -0.77 14.42 16 Total: -1.00 -76.93 346.27 4.22 -72.71 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: 0.29 Total: 13.92 kcal Atomic # 6 Polarization: 6.93 SS G_CDS: 7.11 Total: 14.03 kcal Atomic # 7 Polarization: -84.79 SS G_CDS: -4.05 Total: -88.85 kcal Atomic # 8 Polarization: -69.51 SS G_CDS: -0.02 Total: -69.53 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Atomic # 16 Polarization: 12.77 SS G_CDS: -1.13 Total: 11.64 kcal Total: -76.93 4.22 -72.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782423387.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.519 kcal (2) G-P(sol) polarization free energy of solvation -76.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.17 seconds