Wall clock time and date at job start Tue Mar 31 2020 14:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86794 * 119.99973 * 2 1 4 4 H 1.48503 * 109.47178 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47097 * 299.99302 * 3 2 1 6 6 H 1.48502 * 109.47583 * 59.99876 * 3 2 1 7 7 C 1.39934 * 119.99681 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00114 * 197.86007 * 7 2 1 9 9 C 1.41436 * 120.00211 * 17.86118 * 7 2 1 10 10 C 1.40792 * 120.17621 * 204.39095 * 9 7 2 11 11 C 1.37718 * 120.05257 * 180.02562 * 10 9 7 12 12 C 1.38353 * 120.41757 * 359.97438 * 11 10 9 13 13 C 1.39924 * 120.35413 * 0.02562 * 12 11 10 14 14 C 1.47768 * 120.03227 * 180.02562 * 13 12 11 15 15 O 1.21464 * 120.00223 * 179.97438 * 14 13 12 16 16 O 1.34704 * 120.00116 * 359.97438 * 14 13 12 17 17 C 1.45201 * 117.00270 * 180.02562 * 16 14 13 18 18 C 1.53007 * 109.46958 * 179.97438 * 17 16 14 19 19 S 1.81401 * 109.46698 * 179.97438 * 18 17 16 20 20 C 1.76205 * 102.99877 * 180.02562 * 19 18 17 21 21 C 1.38969 * 120.07567 * 359.72355 * 20 19 18 22 22 C 1.38087 * 119.91571 * 179.76943 * 21 20 19 23 23 C 1.38304 * 120.07765 * 0.48385 * 22 21 20 24 24 C 1.38293 * 120.16312 * 359.77103 * 23 22 21 25 25 C 1.38088 * 120.08258 * 359.97438 * 24 23 22 26 26 C 1.39091 * 119.93758 * 0.02562 * 13 12 11 27 27 H 0.96996 * 119.99900 * 0.02562 * 1 2 3 28 28 H 1.08001 * 119.97524 * 0.02562 * 10 9 7 29 29 H 1.07999 * 119.79229 * 179.97438 * 11 10 9 30 30 H 1.08001 * 119.82401 * 180.02562 * 12 11 10 31 31 H 1.09002 * 109.46958 * 299.99666 * 17 16 14 32 32 H 1.08996 * 109.47082 * 60.00129 * 17 16 14 33 33 H 1.09002 * 109.47119 * 299.99698 * 18 17 16 34 34 H 1.08996 * 109.47013 * 60.00216 * 18 17 16 35 35 H 1.07999 * 120.04885 * 359.97438 * 21 20 19 36 36 H 1.08001 * 119.96102 * 180.23246 * 22 21 20 37 37 H 1.08004 * 119.91687 * 179.74893 * 23 22 21 38 38 H 1.08001 * 119.96252 * 179.97438 * 24 23 22 39 39 H 1.07997 * 120.03955 * 179.97438 * 25 24 23 40 40 H 1.08005 * 120.20036 * 179.72812 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.7023 1.3463 0.0006 5 1 1.8836 2.3963 -1.2126 6 1 1.8835 2.3965 1.2125 7 6 2.0079 -1.2119 0.0005 8 1 3.0489 -1.2344 0.2874 9 6 1.3518 -2.4074 -0.3746 10 6 1.8268 -3.6500 0.0864 11 6 1.1864 -4.8126 -0.2809 12 6 0.0742 -4.7700 -1.1027 13 6 -0.4126 -3.5445 -1.5708 14 6 -1.6014 -3.5073 -2.4477 15 8 -2.0238 -2.4432 -2.8534 16 8 -2.2167 -4.6535 -2.7973 17 6 -3.3781 -4.5413 -3.6615 18 6 -3.9371 -5.9364 -3.9482 19 16 -5.3885 -5.7960 -5.0273 20 6 -5.8859 -7.4727 -5.2426 21 6 -5.1700 -8.4954 -4.6322 22 6 -5.5655 -9.8078 -4.7992 23 6 -6.6667 -10.1057 -5.5812 24 6 -7.3784 -9.0909 -6.1945 25 6 -6.9919 -7.7757 -6.0277 26 6 0.2235 -2.3614 -1.2099 27 1 -0.4850 0.8400 -0.0004 28 1 2.6942 -3.6916 0.7285 29 1 1.5546 -5.7635 0.0748 30 1 -0.4209 -5.6876 -1.3844 31 1 -4.1406 -3.9380 -3.1688 32 1 -3.0888 -4.0665 -4.5991 33 1 -3.1744 -6.5393 -4.4411 34 1 -4.2263 -6.4115 -3.0109 35 1 -4.3072 -8.2639 -4.0251 36 1 -5.0118 -10.6029 -4.3221 37 1 -6.9714 -11.1334 -5.7134 38 1 -8.2376 -9.3272 -6.8047 39 1 -7.5479 -6.9838 -6.5073 40 1 -0.1461 -1.4135 -1.5724 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000783016793.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:36 Heat of formation + Delta-G solvation = -49.077539 kcal Electronic energy + Delta-G solvation = -23044.411553 eV Core-core repulsion = 19493.650124 eV Total energy + Delta-G solvation = -3550.761429 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.092 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.85833 -39.22562 -37.47624 -35.99720 -33.81182 -32.29009 -31.31649 -31.14861 -30.20921 -29.55129 -25.48900 -24.48201 -23.13345 -22.93253 -22.10579 -21.03991 -19.93952 -18.11748 -17.92429 -16.79680 -16.40499 -16.37728 -15.99968 -15.35264 -15.05443 -14.89578 -14.72908 -14.42283 -14.07867 -13.79178 -13.36223 -13.33942 -13.33168 -12.72161 -12.58947 -12.26513 -12.04706 -11.74824 -11.67527 -11.44074 -11.24317 -11.14835 -10.81255 -10.56001 -10.49983 -10.36838 -10.25756 -10.07860 -9.77821 -9.55622 -9.33447 -9.28962 -7.80459 -7.70842 -7.61285 -6.87645 -4.48431 0.86593 1.01929 1.02091 1.90911 2.05307 2.72799 3.04338 3.08148 3.10233 3.26153 3.37094 3.52844 3.86955 4.50288 4.51930 4.54327 4.58879 4.60116 4.76105 5.03814 5.12155 5.19453 5.37659 5.42317 5.44473 5.49938 5.63168 5.71556 5.91803 6.02870 6.07286 6.15329 6.33856 6.54717 6.56367 6.83510 6.88929 6.92199 7.12001 7.25235 7.62329 7.69450 7.85750 8.04861 8.39310 8.45594 8.71888 8.73912 10.07698 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.027001 B = 0.002042 C = 0.001911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.747418 B =13707.284313 C =14650.863915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.072 3.928 3 Si 0.911 3.089 4 H -0.259 1.259 5 H -0.270 1.270 6 H -0.273 1.273 7 C -0.458 4.458 8 H 0.083 0.917 9 C 0.095 3.905 10 C -0.201 4.201 11 C -0.103 4.103 12 C -0.195 4.195 13 C -0.114 4.114 14 C 0.514 3.486 15 O -0.514 6.514 16 O -0.353 6.353 17 C 0.083 3.917 18 C -0.113 4.113 19 S -0.094 6.094 20 C -0.082 4.082 21 C -0.133 4.133 22 C -0.099 4.099 23 C -0.127 4.127 24 C -0.102 4.102 25 C -0.101 4.101 26 C -0.089 4.089 27 H 0.285 0.715 28 H 0.099 0.901 29 H 0.097 0.903 30 H 0.103 0.897 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.101 0.899 34 H 0.101 0.899 35 H 0.127 0.873 36 H 0.126 0.874 37 H 0.124 0.876 38 H 0.127 0.873 39 H 0.128 0.872 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.419 -14.654 -9.282 20.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.147 4.147 3 Si 0.735 3.265 4 H -0.183 1.183 5 H -0.195 1.195 6 H -0.199 1.199 7 C -0.487 4.487 8 H 0.102 0.898 9 C 0.093 3.907 10 C -0.221 4.221 11 C -0.121 4.121 12 C -0.215 4.215 13 C -0.116 4.116 14 C 0.361 3.639 15 O -0.403 6.403 16 O -0.272 6.272 17 C 0.007 3.993 18 C -0.261 4.261 19 S 0.150 5.850 20 C -0.195 4.195 21 C -0.157 4.157 22 C -0.119 4.119 23 C -0.148 4.148 24 C -0.122 4.122 25 C -0.125 4.125 26 C -0.108 4.108 27 H 0.096 0.904 28 H 0.117 0.883 29 H 0.115 0.885 30 H 0.121 0.879 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.119 0.881 34 H 0.120 0.880 35 H 0.145 0.855 36 H 0.144 0.856 37 H 0.142 0.858 38 H 0.145 0.855 39 H 0.146 0.854 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -12.185 -13.046 -9.802 20.366 hybrid contribution 0.684 -0.409 0.511 0.947 sum -11.501 -13.456 -9.291 19.991 Atomic orbital electron populations 1.69783 1.07634 1.29805 1.33778 1.25981 0.94791 1.01677 0.92215 0.86210 0.80891 0.80664 0.78727 1.18272 1.19528 1.19872 1.19609 0.98309 0.90896 1.39901 0.89842 1.17550 0.91110 0.92657 0.89430 1.21190 1.03182 0.92690 1.05013 1.20509 0.96101 0.96949 0.98585 1.20543 1.00251 0.95230 1.05474 1.18805 0.94759 0.95972 1.02022 1.21907 0.83043 0.80687 0.78276 1.90778 1.65052 1.31080 1.53392 1.86569 1.41398 1.36646 1.62544 1.22350 0.87432 0.94466 0.95053 1.23558 0.98408 1.01340 1.02765 1.85495 1.33859 1.04328 1.61348 1.21778 0.99476 0.96457 1.01743 1.21283 1.00441 0.92857 1.01131 1.21102 0.96768 0.95963 0.98073 1.21207 0.96077 0.99417 0.98108 1.21094 0.99633 0.92205 0.99287 1.20767 0.95874 0.97075 0.98776 1.21656 0.96516 0.95983 0.96685 0.90402 0.88289 0.88499 0.87930 0.90349 0.90403 0.88055 0.88041 0.85502 0.85570 0.85788 0.85488 0.85414 0.84657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.38 10.96 55.55 0.61 -19.77 16 2 C 0.07 1.79 5.14 -17.34 -0.09 1.70 16 3 Si 0.91 18.39 29.59 -169.99 -5.03 13.36 16 4 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 5 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 6 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 7 C -0.46 -11.76 9.05 -37.73 -0.34 -12.10 16 8 H 0.08 2.03 7.91 -52.48 -0.41 1.61 16 9 C 0.10 2.46 5.57 -106.88 -0.60 1.86 16 10 C -0.20 -4.66 9.78 -38.81 -0.38 -5.04 16 11 C -0.10 -2.18 10.01 -39.73 -0.40 -2.58 16 12 C -0.20 -4.21 9.62 -38.91 -0.37 -4.59 16 13 C -0.11 -2.71 5.87 -105.05 -0.62 -3.33 16 14 C 0.51 11.38 7.90 34.63 0.27 11.65 16 15 O -0.51 -12.43 16.12 -19.24 -0.31 -12.74 16 16 O -0.35 -6.43 9.46 -40.50 -0.38 -6.81 16 17 C 0.08 1.21 5.48 37.16 0.20 1.41 16 18 C -0.11 -1.27 4.71 37.16 0.18 -1.10 16 19 S -0.09 -1.05 21.92 -107.50 -2.36 -3.40 16 20 C -0.08 -0.85 6.11 -39.04 -0.24 -1.09 16 21 C -0.13 -1.29 9.36 -39.37 -0.37 -1.65 16 22 C -0.10 -0.82 10.04 -39.61 -0.40 -1.21 16 23 C -0.13 -0.95 10.04 -39.54 -0.40 -1.35 16 24 C -0.10 -0.78 10.04 -39.62 -0.40 -1.18 16 25 C -0.10 -0.92 9.79 -39.36 -0.39 -1.31 16 26 C -0.09 -2.33 8.23 -38.43 -0.32 -2.64 16 27 H 0.28 6.76 8.30 -40.82 -0.34 6.42 16 28 H 0.10 2.11 8.06 -52.49 -0.42 1.69 16 29 H 0.10 1.73 8.06 -52.49 -0.42 1.30 16 30 H 0.10 1.96 7.59 -52.49 -0.40 1.57 16 31 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.10 1.06 7.74 -51.92 -0.40 0.66 16 34 H 0.10 1.08 7.76 -51.93 -0.40 0.67 16 35 H 0.13 1.13 5.88 -52.49 -0.31 0.82 16 36 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 37 H 0.12 0.63 8.06 -52.48 -0.42 0.21 16 38 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 39 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 40 H 0.14 3.79 5.75 -52.48 -0.30 3.49 16 LS Contribution 361.67 15.07 5.45 5.45 Total: -1.00 -28.75 361.67 -11.41 -40.16 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -4.74 Total: 6.30 kcal Atomic # 6 Polarization: -17.90 SS G_CDS: -4.64 Total: -22.54 kcal Atomic # 7 Polarization: -20.38 SS G_CDS: 0.61 Total: -19.77 kcal Atomic # 8 Polarization: -18.86 SS G_CDS: -0.69 Total: -19.56 kcal Atomic # 14 Polarization: 18.39 SS G_CDS: -5.03 Total: 13.36 kcal Atomic # 16 Polarization: -1.05 SS G_CDS: -2.36 Total: -3.40 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -28.75 -11.41 -40.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000783016793.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.922 kcal (2) G-P(sol) polarization free energy of solvation -28.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds