Wall clock time and date at job start Tue Mar 31 2020 14:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86794 * 119.99973 * 2 1 4 4 H 1.48503 * 109.47178 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47097 * 299.99302 * 3 2 1 6 6 H 1.48502 * 109.47583 * 59.99876 * 3 2 1 7 7 C 1.39934 * 119.99681 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00114 * 197.86007 * 7 2 1 9 9 C 1.41436 * 120.00211 * 17.86118 * 7 2 1 10 10 C 1.40792 * 120.17621 * 204.39095 * 9 7 2 11 11 C 1.37718 * 120.05257 * 180.02562 * 10 9 7 12 12 C 1.38353 * 120.41757 * 359.97438 * 11 10 9 13 13 C 1.39924 * 120.35413 * 0.02562 * 12 11 10 14 14 C 1.47768 * 120.03227 * 180.02562 * 13 12 11 15 15 O 1.21464 * 120.00223 * 179.97438 * 14 13 12 16 16 O 1.34704 * 120.00116 * 359.97438 * 14 13 12 17 17 C 1.45201 * 117.00270 * 180.02562 * 16 14 13 18 18 C 1.53007 * 109.46958 * 179.97438 * 17 16 14 19 19 S 1.81401 * 109.46698 * 179.97438 * 18 17 16 20 20 C 1.76205 * 102.99877 * 180.02562 * 19 18 17 21 21 C 1.38969 * 120.07567 * 359.72355 * 20 19 18 22 22 C 1.38087 * 119.91571 * 179.76943 * 21 20 19 23 23 C 1.38304 * 120.07765 * 0.48385 * 22 21 20 24 24 C 1.38293 * 120.16312 * 359.77103 * 23 22 21 25 25 C 1.38088 * 120.08258 * 359.97438 * 24 23 22 26 26 C 1.39091 * 119.93758 * 0.02562 * 13 12 11 27 27 H 0.96996 * 119.99900 * 0.02562 * 1 2 3 28 28 H 1.08001 * 119.97524 * 0.02562 * 10 9 7 29 29 H 1.07999 * 119.79229 * 179.97438 * 11 10 9 30 30 H 1.08001 * 119.82401 * 180.02562 * 12 11 10 31 31 H 1.09002 * 109.46958 * 299.99666 * 17 16 14 32 32 H 1.08996 * 109.47082 * 60.00129 * 17 16 14 33 33 H 1.09002 * 109.47119 * 299.99698 * 18 17 16 34 34 H 1.08996 * 109.47013 * 60.00216 * 18 17 16 35 35 H 1.07999 * 120.04885 * 359.97438 * 21 20 19 36 36 H 1.08001 * 119.96102 * 180.23246 * 22 21 20 37 37 H 1.08004 * 119.91687 * 179.74893 * 23 22 21 38 38 H 1.08001 * 119.96252 * 179.97438 * 24 23 22 39 39 H 1.07997 * 120.03955 * 179.97438 * 25 24 23 40 40 H 1.08005 * 120.20036 * 179.72812 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.7023 1.3463 0.0006 5 1 1.8836 2.3963 -1.2126 6 1 1.8835 2.3965 1.2125 7 6 2.0079 -1.2119 0.0005 8 1 3.0489 -1.2344 0.2874 9 6 1.3518 -2.4074 -0.3746 10 6 1.8268 -3.6500 0.0864 11 6 1.1864 -4.8126 -0.2809 12 6 0.0742 -4.7700 -1.1027 13 6 -0.4126 -3.5445 -1.5708 14 6 -1.6014 -3.5073 -2.4477 15 8 -2.0238 -2.4432 -2.8534 16 8 -2.2167 -4.6535 -2.7973 17 6 -3.3781 -4.5413 -3.6615 18 6 -3.9371 -5.9364 -3.9482 19 16 -5.3885 -5.7960 -5.0273 20 6 -5.8859 -7.4727 -5.2426 21 6 -5.1700 -8.4954 -4.6322 22 6 -5.5655 -9.8078 -4.7992 23 6 -6.6667 -10.1057 -5.5812 24 6 -7.3784 -9.0909 -6.1945 25 6 -6.9919 -7.7757 -6.0277 26 6 0.2235 -2.3614 -1.2099 27 1 -0.4850 0.8400 -0.0004 28 1 2.6942 -3.6916 0.7285 29 1 1.5546 -5.7635 0.0748 30 1 -0.4209 -5.6876 -1.3844 31 1 -4.1406 -3.9380 -3.1688 32 1 -3.0888 -4.0665 -4.5991 33 1 -3.1744 -6.5393 -4.4411 34 1 -4.2263 -6.4115 -3.0109 35 1 -4.3072 -8.2639 -4.0251 36 1 -5.0118 -10.6029 -4.3221 37 1 -6.9714 -11.1334 -5.7134 38 1 -8.2376 -9.3272 -6.8047 39 1 -7.5479 -6.9838 -6.5073 40 1 -0.1461 -1.4135 -1.5724 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000783016793.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:35 Heat of formation + Delta-G solvation = -60.401484 kcal Electronic energy + Delta-G solvation = -23044.902596 eV Core-core repulsion = 19493.650124 eV Total energy + Delta-G solvation = -3551.252473 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.092 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.53041 -39.84434 -39.24608 -37.65389 -35.64230 -33.41428 -32.18976 -31.92326 -31.68891 -31.36041 -27.33836 -25.84360 -24.29884 -23.63830 -23.06792 -22.84725 -21.64309 -19.72370 -18.80558 -18.33718 -17.77375 -17.75715 -17.21364 -16.72552 -16.47890 -16.03725 -15.72062 -15.66547 -15.33883 -15.16084 -14.66964 -14.40989 -14.34751 -14.13612 -13.97350 -13.62373 -13.40512 -13.22396 -13.00505 -12.82395 -12.59363 -12.43652 -12.22275 -12.08295 -12.05936 -11.79612 -11.55940 -11.37035 -11.27659 -11.11138 -10.77055 -9.96304 -9.64123 -9.46269 -8.70424 -8.51778 -6.41119 0.09059 0.10950 0.21643 0.39348 0.94844 1.22490 1.37416 1.44070 1.53563 1.75184 1.79478 2.18222 2.70288 2.74721 3.42080 3.57965 3.62151 3.89674 3.91017 3.98349 4.10465 4.24270 4.34890 4.39583 4.47402 4.50590 4.54760 4.61390 4.77183 4.83491 5.03364 5.04796 5.11249 5.18261 5.26461 5.27964 5.42540 5.43738 5.55065 5.79558 5.87332 5.96385 5.99710 6.21342 6.51533 6.73454 6.84550 6.87184 8.27266 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.027001 B = 0.002042 C = 0.001911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.747418 B =13707.284313 C =14650.863915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.029 3.971 3 Si 0.984 3.016 4 H -0.250 1.250 5 H -0.271 1.271 6 H -0.265 1.265 7 C -0.492 4.492 8 H 0.088 0.912 9 C 0.065 3.935 10 C -0.202 4.202 11 C -0.099 4.099 12 C -0.180 4.180 13 C -0.128 4.128 14 C 0.518 3.482 15 O -0.544 6.544 16 O -0.343 6.343 17 C 0.079 3.921 18 C -0.100 4.100 19 S -0.114 6.114 20 C -0.100 4.100 21 C -0.148 4.148 22 C -0.106 4.106 23 C -0.126 4.126 24 C -0.104 4.104 25 C -0.114 4.114 26 C -0.124 4.124 27 H 0.288 0.712 28 H 0.116 0.884 29 H 0.142 0.858 30 H 0.135 0.865 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.112 0.888 34 H 0.110 0.890 35 H 0.130 0.870 36 H 0.146 0.854 37 H 0.151 0.849 38 H 0.153 0.847 39 H 0.133 0.867 40 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.519 -17.471 -9.494 22.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.186 4.186 3 Si 0.804 3.196 4 H -0.173 1.173 5 H -0.196 1.196 6 H -0.190 1.190 7 C -0.521 4.521 8 H 0.106 0.894 9 C 0.062 3.938 10 C -0.222 4.222 11 C -0.117 4.117 12 C -0.199 4.199 13 C -0.130 4.130 14 C 0.366 3.634 15 O -0.435 6.435 16 O -0.260 6.260 17 C 0.004 3.996 18 C -0.248 4.248 19 S 0.129 5.871 20 C -0.212 4.212 21 C -0.171 4.171 22 C -0.126 4.126 23 C -0.147 4.147 24 C -0.124 4.124 25 C -0.138 4.138 26 C -0.143 4.143 27 H 0.098 0.902 28 H 0.134 0.866 29 H 0.160 0.840 30 H 0.153 0.847 31 H 0.093 0.907 32 H 0.095 0.905 33 H 0.131 0.869 34 H 0.129 0.871 35 H 0.147 0.853 36 H 0.164 0.836 37 H 0.169 0.831 38 H 0.170 0.830 39 H 0.151 0.849 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -12.290 -15.914 -10.015 22.463 hybrid contribution 0.590 0.187 0.508 0.801 sum -11.700 -15.727 -9.507 21.785 Atomic orbital electron populations 1.69872 1.09275 1.30737 1.35282 1.26871 0.95421 1.05046 0.91252 0.85129 0.79722 0.75996 0.78743 1.17327 1.19566 1.18954 1.19888 0.98727 0.91915 1.41582 0.89382 1.17912 0.91642 0.94155 0.90056 1.21516 1.03543 0.92505 1.04602 1.20975 0.95208 0.98097 0.97384 1.20967 0.99815 0.95331 1.03817 1.19050 0.95305 0.96237 1.02366 1.21706 0.82808 0.81119 0.77800 1.90758 1.65871 1.32430 1.54487 1.86514 1.42301 1.34410 1.62776 1.22602 0.85972 0.96853 0.94184 1.23416 0.98762 0.99067 1.03509 1.85525 1.33841 1.06143 1.61549 1.21840 1.00580 0.95580 1.03226 1.21448 1.00740 0.93466 1.01485 1.21422 0.97202 0.95849 0.98128 1.21603 0.95338 1.00765 0.96945 1.21444 1.00253 0.91508 0.99146 1.20995 0.95760 0.98192 0.98835 1.21461 0.98232 0.95836 0.98807 0.90152 0.86607 0.83995 0.84741 0.90750 0.90495 0.86937 0.87109 0.85258 0.83598 0.83108 0.82961 0.84927 0.87699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -45.01 10.96 21.82 0.24 -44.77 16 2 C 0.03 1.48 5.14 85.25 0.44 1.92 16 3 Si 0.98 38.66 29.59 68.60 2.03 40.69 16 4 H -0.25 -9.34 7.11 99.48 0.71 -8.63 16 5 H -0.27 -10.53 7.11 99.48 0.71 -9.82 16 6 H -0.26 -9.93 7.11 99.48 0.71 -9.23 16 7 C -0.49 -26.03 9.05 23.47 0.21 -25.82 16 8 H 0.09 4.37 7.91 -2.91 -0.02 4.35 16 9 C 0.06 3.43 5.57 -21.32 -0.12 3.31 16 10 C -0.20 -9.18 9.78 22.77 0.22 -8.96 16 11 C -0.10 -3.90 10.01 22.17 0.22 -3.67 16 12 C -0.18 -7.37 9.62 22.71 0.22 -7.15 16 13 C -0.13 -6.14 5.87 -20.14 -0.12 -6.26 16 14 C 0.52 23.28 7.90 70.34 0.56 23.84 16 15 O -0.54 -27.39 16.12 19.95 0.32 -27.07 16 16 O -0.34 -12.22 9.46 -56.14 -0.53 -12.75 16 17 C 0.08 2.29 5.48 71.98 0.39 2.68 16 18 C -0.10 -2.16 4.71 71.98 0.34 -1.82 16 19 S -0.11 -2.48 21.92 -56.49 -1.24 -3.72 16 20 C -0.10 -1.97 6.11 22.62 0.14 -1.83 16 21 C -0.15 -2.62 9.36 22.41 0.21 -2.41 16 22 C -0.11 -1.49 10.04 22.25 0.22 -1.27 16 23 C -0.13 -1.51 10.04 22.30 0.22 -1.28 16 24 C -0.10 -1.33 10.04 22.25 0.22 -1.11 16 25 C -0.11 -1.94 9.79 22.41 0.22 -1.72 16 26 C -0.12 -6.74 8.23 23.02 0.19 -6.55 16 27 H 0.29 14.38 8.30 -92.71 -0.77 13.62 16 28 H 0.12 4.77 8.06 -2.91 -0.02 4.74 16 29 H 0.14 4.34 8.06 -2.91 -0.02 4.31 16 30 H 0.13 4.63 7.59 -2.91 -0.02 4.61 16 31 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 32 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 33 H 0.11 2.18 7.74 -2.39 -0.02 2.17 16 34 H 0.11 2.19 7.76 -2.39 -0.02 2.17 16 35 H 0.13 2.11 5.88 -2.91 -0.02 2.09 16 36 H 0.15 1.38 8.06 -2.91 -0.02 1.35 16 37 H 0.15 0.95 8.06 -2.91 -0.02 0.93 16 38 H 0.15 1.10 8.06 -2.91 -0.02 1.08 16 39 H 0.13 2.00 8.06 -2.91 -0.02 1.97 16 40 H 0.11 6.30 5.75 -2.91 -0.02 6.28 16 Total: -1.00 -64.96 361.67 5.67 -59.29 By element: Atomic # 1 Polarization: 25.38 SS G_CDS: 1.06 Total: 26.44 kcal Atomic # 6 Polarization: -41.89 SS G_CDS: 3.79 Total: -38.10 kcal Atomic # 7 Polarization: -45.01 SS G_CDS: 0.24 Total: -44.77 kcal Atomic # 8 Polarization: -39.62 SS G_CDS: -0.21 Total: -39.83 kcal Atomic # 14 Polarization: 38.66 SS G_CDS: 2.03 Total: 40.69 kcal Atomic # 16 Polarization: -2.48 SS G_CDS: -1.24 Total: -3.72 kcal Total: -64.96 5.67 -59.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000783016793.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.112 kcal (2) G-P(sol) polarization free energy of solvation -64.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds