Wall clock time and date at job start Tue Mar 31 2020 14:59:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30632 * 1 3 3 Si 1.86799 * 120.00439 * 2 1 4 4 H 1.48502 * 109.46954 * 270.00159 * 3 2 1 5 5 H 1.48496 * 109.46882 * 29.99600 * 3 2 1 6 6 H 1.48493 * 109.47452 * 149.99824 * 3 2 1 7 7 C 1.40247 * 119.99526 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99857 * 197.86653 * 7 2 1 9 9 C 1.41094 * 120.00127 * 17.86427 * 7 2 1 10 10 C 1.40897 * 120.09782 * 204.63553 * 9 7 2 11 11 C 1.36298 * 119.89623 * 180.02562 * 10 9 7 12 12 C 1.40063 * 120.10109 * 0.02562 * 11 10 9 13 13 C 1.47510 * 119.89907 * 179.97438 * 12 11 10 14 14 O 1.21510 * 120.00434 * 359.97438 * 13 12 11 15 15 O 1.34776 * 119.99951 * 180.02562 * 13 12 11 16 16 C 1.45200 * 117.00189 * 179.97438 * 15 13 12 17 17 C 1.52995 * 109.47284 * 179.97438 * 16 15 13 18 18 S 1.81407 * 109.47145 * 179.97438 * 17 16 15 19 19 C 1.76199 * 103.00108 * 180.02562 * 18 17 16 20 20 C 1.38970 * 120.08171 * 180.02562 * 19 18 17 21 21 C 1.38080 * 119.92105 * 179.97438 * 20 19 18 22 22 C 1.38307 * 120.08089 * 359.97438 * 21 20 19 23 23 C 1.38299 * 120.15606 * 0.02562 * 22 21 20 24 24 C 1.38079 * 120.08675 * 0.02562 * 23 22 21 25 25 C 1.40058 * 120.20101 * 0.25276 * 12 11 10 26 26 C 1.36304 * 120.10294 * 359.48181 * 25 12 11 27 27 H 0.97004 * 119.99566 * 359.97438 * 1 2 3 28 28 H 1.08007 * 120.05139 * 0.02562 * 10 9 7 29 29 H 1.08003 * 119.94973 * 179.97438 * 11 10 9 30 30 H 1.09005 * 109.46971 * 59.99801 * 16 15 13 31 31 H 1.09002 * 109.47107 * 300.00264 * 16 15 13 32 32 H 1.09002 * 109.47312 * 60.00539 * 17 16 15 33 33 H 1.08996 * 109.47237 * 300.00127 * 17 16 15 34 34 H 1.08004 * 120.04058 * 359.69984 * 20 19 18 35 35 H 1.08003 * 119.96074 * 179.97438 * 21 20 19 36 36 H 1.07998 * 119.91875 * 179.97438 * 22 21 20 37 37 H 1.08007 * 119.95432 * 179.97438 * 23 22 21 38 38 H 1.07998 * 120.04232 * 179.97438 * 24 23 22 39 39 H 1.08006 * 119.95177 * 179.74903 * 25 12 11 40 40 H 1.08001 * 120.05591 * 180.23853 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 2.4879 2.0463 -1.4001 5 1 1.4379 2.6526 0.6999 6 1 3.5379 1.4401 0.7000 7 6 2.0075 -1.2146 0.0005 8 1 3.0484 -1.2371 0.2875 9 6 1.3529 -2.4072 -0.3738 10 6 1.8266 -3.6495 0.0927 11 6 1.1915 -4.7990 -0.2719 12 6 0.0700 -4.7467 -1.1093 13 6 -0.6136 -5.9936 -1.5015 14 8 -0.2034 -7.0641 -1.0986 15 8 -1.6927 -5.9457 -2.3076 16 6 -2.3144 -7.2116 -2.6529 17 6 -3.5146 -6.9578 -3.5671 18 16 -4.2909 -8.5395 -3.9991 19 6 -5.6288 -8.0538 -5.0377 20 6 -6.4753 -9.0144 -5.5781 21 6 -7.5231 -8.6300 -6.3912 22 6 -7.7309 -7.2909 -6.6677 23 6 -6.8904 -6.3323 -6.1317 24 6 -5.8400 -6.7092 -5.3186 25 6 -0.4009 -3.5145 -1.5801 26 6 0.2246 -2.3594 -1.2163 27 1 -0.4850 0.8401 0.0004 28 1 2.6916 -3.6908 0.7381 29 1 1.5541 -5.7518 0.0848 30 1 -2.6497 -7.7115 -1.7441 31 1 -1.5911 -7.8429 -3.1690 32 1 -3.1797 -6.4578 -4.4760 33 1 -4.2378 -6.3267 -3.0506 34 1 -6.3113 -10.0606 -5.3659 35 1 -8.1811 -9.3760 -6.8118 36 1 -8.5509 -6.9933 -7.3043 37 1 -7.0555 -5.2874 -6.3500 38 1 -5.1839 -5.9600 -4.9007 39 1 -1.2636 -3.4792 -2.2289 40 1 -0.1414 -1.4094 -1.5767 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000784403749.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:40 Heat of formation + Delta-G solvation = -54.226936 kcal Electronic energy + Delta-G solvation = -22875.458319 eV Core-core repulsion = 19324.473595 eV Total energy + Delta-G solvation = -3550.984724 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.092 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -39.66370 -39.19696 -37.53713 -35.86888 -34.00006 -32.22459 -31.28600 -31.10481 -30.23483 -29.55739 -26.30227 -24.11425 -23.00767 -22.66544 -21.94092 -21.00645 -20.05745 -18.06514 -17.61267 -17.14356 -16.45223 -16.26652 -16.22781 -15.46556 -15.32235 -14.86333 -14.31916 -14.21716 -14.01935 -13.76237 -13.37635 -13.30007 -13.25587 -12.78239 -12.22818 -12.20899 -12.08571 -11.92706 -11.64610 -11.47110 -11.38326 -11.35193 -11.03192 -10.75403 -10.47288 -10.26758 -10.17133 -10.04607 -9.66569 -9.51690 -9.42366 -9.30658 -7.80924 -7.69371 -7.67949 -7.14563 -4.72645 0.89360 1.04921 1.06472 1.99566 2.08823 2.83445 2.89837 2.92812 2.98300 3.39898 3.43599 3.57514 3.66801 4.41315 4.53302 4.61506 4.62447 4.65166 4.79121 5.06797 5.16115 5.23878 5.41006 5.45383 5.52660 5.53588 5.66100 5.94340 5.94779 6.05707 6.15188 6.18172 6.21266 6.57537 6.69537 6.74814 6.93323 6.94591 7.04897 7.36313 7.61619 7.73053 7.78303 7.95602 8.30259 8.51498 8.64154 8.66080 9.76631 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.017833 B = 0.002063 C = 0.001860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.763669 B =13569.628733 C =15049.226876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.763 5.763 2 C 0.072 3.928 3 Si 0.917 3.083 4 H -0.263 1.263 5 H -0.274 1.274 6 H -0.258 1.258 7 C -0.433 4.433 8 H 0.088 0.912 9 C 0.131 3.869 10 C -0.238 4.238 11 C -0.017 4.017 12 C -0.275 4.275 13 C 0.516 3.484 14 O -0.550 6.550 15 O -0.357 6.357 16 C 0.086 3.914 17 C -0.112 4.112 18 S -0.097 6.097 19 C -0.081 4.081 20 C -0.101 4.101 21 C -0.103 4.103 22 C -0.128 4.128 23 C -0.099 4.099 24 C -0.133 4.133 25 C -0.043 4.043 26 C -0.185 4.185 27 H 0.289 0.711 28 H 0.102 0.898 29 H 0.103 0.897 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.100 0.900 33 H 0.101 0.899 34 H 0.128 0.872 35 H 0.127 0.873 36 H 0.124 0.876 37 H 0.127 0.873 38 H 0.127 0.873 39 H 0.101 0.899 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.551 -8.053 -10.590 18.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.385 5.385 2 C -0.150 4.150 3 Si 0.740 3.260 4 H -0.188 1.188 5 H -0.199 1.199 6 H -0.182 1.182 7 C -0.460 4.460 8 H 0.106 0.894 9 C 0.127 3.873 10 C -0.258 4.258 11 C -0.036 4.036 12 C -0.278 4.278 13 C 0.369 3.631 14 O -0.443 6.443 15 O -0.276 6.276 16 C 0.010 3.990 17 C -0.260 4.260 18 S 0.147 5.853 19 C -0.194 4.194 20 C -0.125 4.125 21 C -0.123 4.123 22 C -0.148 4.148 23 C -0.119 4.119 24 C -0.157 4.157 25 C -0.062 4.062 26 C -0.204 4.204 27 H 0.100 0.900 28 H 0.120 0.880 29 H 0.121 0.879 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.119 0.881 33 H 0.119 0.881 34 H 0.146 0.854 35 H 0.145 0.855 36 H 0.142 0.858 37 H 0.144 0.856 38 H 0.145 0.855 39 H 0.119 0.881 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -12.215 -9.300 -10.027 18.337 hybrid contribution -0.220 1.889 -0.368 1.937 sum -12.435 -7.412 -10.395 17.822 Atomic orbital electron populations 1.69741 1.08011 1.30397 1.30365 1.26174 0.94871 1.02135 0.91865 0.86151 0.80563 0.79503 0.79783 1.18788 1.19892 1.18159 1.19951 0.98506 0.91133 1.36375 0.89397 1.17862 0.90307 0.92220 0.86882 1.20686 1.04689 0.92412 1.07993 1.20352 0.92453 0.97455 0.93316 1.18180 1.04539 0.89094 1.15964 1.21597 0.76759 0.90334 0.74437 1.90710 1.65923 1.32120 1.55590 1.86572 1.43670 1.33605 1.63748 1.22265 0.92856 0.85511 0.98406 1.23566 1.00461 0.98030 1.03989 1.85442 1.29863 1.12007 1.57950 1.21777 0.99489 0.96523 1.01644 1.20759 0.94929 0.98689 0.98154 1.21091 0.97199 0.96309 0.97656 1.21207 0.99875 0.93127 1.00608 1.21106 0.94451 0.99813 0.96517 1.21294 0.99592 0.94383 1.00407 1.20629 0.97110 0.91924 0.96498 1.21013 1.00072 0.97059 1.02249 0.89950 0.87998 0.87890 0.90673 0.90675 0.88112 0.88081 0.85443 0.85510 0.85795 0.85553 0.85469 0.88096 0.86024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -17.83 10.96 55.56 0.61 -17.22 16 2 C 0.07 1.63 5.14 -17.31 -0.09 1.54 16 3 Si 0.92 16.71 29.60 -169.99 -5.03 11.68 16 4 H -0.26 -4.76 7.11 56.52 0.40 -4.36 16 5 H -0.27 -4.89 7.11 56.52 0.40 -4.49 16 6 H -0.26 -4.66 7.11 56.52 0.40 -4.26 16 7 C -0.43 -10.43 9.04 -37.74 -0.34 -10.77 16 8 H 0.09 2.01 7.91 -52.49 -0.42 1.59 16 9 C 0.13 3.26 5.57 -106.80 -0.60 2.67 16 10 C -0.24 -5.62 9.73 -39.27 -0.38 -6.00 16 11 C -0.02 -0.40 9.52 -39.60 -0.38 -0.77 16 12 C -0.28 -6.38 5.89 -104.75 -0.62 -7.00 16 13 C 0.52 11.29 7.89 34.51 0.27 11.56 16 14 O -0.55 -12.78 16.11 -19.27 -0.31 -13.09 16 15 O -0.36 -6.69 9.45 -40.70 -0.38 -7.07 16 16 C 0.09 1.28 5.48 37.16 0.20 1.48 16 17 C -0.11 -1.33 4.71 37.16 0.18 -1.15 16 18 S -0.10 -1.10 21.92 -107.50 -2.36 -3.45 16 19 C -0.08 -0.87 6.11 -39.04 -0.24 -1.11 16 20 C -0.10 -0.95 9.79 -39.37 -0.39 -1.34 16 21 C -0.10 -0.81 10.04 -39.61 -0.40 -1.21 16 22 C -0.13 -1.00 10.04 -39.53 -0.40 -1.39 16 23 C -0.10 -0.86 10.04 -39.62 -0.40 -1.26 16 24 C -0.13 -1.35 9.36 -39.37 -0.37 -1.72 16 25 C -0.04 -0.98 9.54 -39.60 -0.38 -1.36 16 26 C -0.18 -4.51 8.63 -39.27 -0.34 -4.85 16 27 H 0.29 6.04 8.29 -40.82 -0.34 5.71 16 28 H 0.10 2.21 8.06 -52.48 -0.42 1.79 16 29 H 0.10 2.26 7.63 -52.48 -0.40 1.86 16 30 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.10 1.12 7.75 -51.92 -0.40 0.72 16 33 H 0.10 1.14 7.75 -51.93 -0.40 0.74 16 34 H 0.13 1.03 8.06 -52.48 -0.42 0.61 16 35 H 0.13 0.69 8.06 -52.48 -0.42 0.26 16 36 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 37 H 0.13 0.85 8.06 -52.48 -0.42 0.43 16 38 H 0.13 1.22 5.88 -52.49 -0.31 0.91 16 39 H 0.10 2.10 7.59 -52.48 -0.40 1.70 16 40 H 0.12 2.99 6.16 -52.49 -0.32 2.67 16 LS Contribution 361.43 15.07 5.45 5.45 Total: -1.00 -27.46 361.43 -11.42 -38.88 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -4.74 Total: 7.52 kcal Atomic # 6 Polarization: -18.04 SS G_CDS: -4.65 Total: -22.69 kcal Atomic # 7 Polarization: -17.83 SS G_CDS: 0.61 Total: -17.22 kcal Atomic # 8 Polarization: -19.47 SS G_CDS: -0.70 Total: -20.16 kcal Atomic # 14 Polarization: 16.71 SS G_CDS: -5.03 Total: 11.68 kcal Atomic # 16 Polarization: -1.10 SS G_CDS: -2.36 Total: -3.45 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -27.46 -11.42 -38.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784403749.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.347 kcal (2) G-P(sol) polarization free energy of solvation -27.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds