Wall clock time and date at job start Tue Mar 31 2020 14:59:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30632 * 1 3 3 Si 1.86799 * 120.00439 * 2 1 4 4 H 1.48502 * 109.46954 * 270.00159 * 3 2 1 5 5 H 1.48496 * 109.46882 * 29.99600 * 3 2 1 6 6 H 1.48493 * 109.47452 * 149.99824 * 3 2 1 7 7 C 1.40247 * 119.99526 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99857 * 197.86653 * 7 2 1 9 9 C 1.41094 * 120.00127 * 17.86427 * 7 2 1 10 10 C 1.40897 * 120.09782 * 204.63553 * 9 7 2 11 11 C 1.36298 * 119.89623 * 180.02562 * 10 9 7 12 12 C 1.40063 * 120.10109 * 0.02562 * 11 10 9 13 13 C 1.47510 * 119.89907 * 179.97438 * 12 11 10 14 14 O 1.21510 * 120.00434 * 359.97438 * 13 12 11 15 15 O 1.34776 * 119.99951 * 180.02562 * 13 12 11 16 16 C 1.45200 * 117.00189 * 179.97438 * 15 13 12 17 17 C 1.52995 * 109.47284 * 179.97438 * 16 15 13 18 18 S 1.81407 * 109.47145 * 179.97438 * 17 16 15 19 19 C 1.76199 * 103.00108 * 180.02562 * 18 17 16 20 20 C 1.38970 * 120.08171 * 180.02562 * 19 18 17 21 21 C 1.38080 * 119.92105 * 179.97438 * 20 19 18 22 22 C 1.38307 * 120.08089 * 359.97438 * 21 20 19 23 23 C 1.38299 * 120.15606 * 0.02562 * 22 21 20 24 24 C 1.38079 * 120.08675 * 0.02562 * 23 22 21 25 25 C 1.40058 * 120.20101 * 0.25276 * 12 11 10 26 26 C 1.36304 * 120.10294 * 359.48181 * 25 12 11 27 27 H 0.97004 * 119.99566 * 359.97438 * 1 2 3 28 28 H 1.08007 * 120.05139 * 0.02562 * 10 9 7 29 29 H 1.08003 * 119.94973 * 179.97438 * 11 10 9 30 30 H 1.09005 * 109.46971 * 59.99801 * 16 15 13 31 31 H 1.09002 * 109.47107 * 300.00264 * 16 15 13 32 32 H 1.09002 * 109.47312 * 60.00539 * 17 16 15 33 33 H 1.08996 * 109.47237 * 300.00127 * 17 16 15 34 34 H 1.08004 * 120.04058 * 359.69984 * 20 19 18 35 35 H 1.08003 * 119.96074 * 179.97438 * 21 20 19 36 36 H 1.07998 * 119.91875 * 179.97438 * 22 21 20 37 37 H 1.08007 * 119.95432 * 179.97438 * 23 22 21 38 38 H 1.07998 * 120.04232 * 179.97438 * 24 23 22 39 39 H 1.08006 * 119.95177 * 179.74903 * 25 12 11 40 40 H 1.08001 * 120.05591 * 180.23853 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 2.4879 2.0463 -1.4001 5 1 1.4379 2.6526 0.6999 6 1 3.5379 1.4401 0.7000 7 6 2.0075 -1.2146 0.0005 8 1 3.0484 -1.2371 0.2875 9 6 1.3529 -2.4072 -0.3738 10 6 1.8266 -3.6495 0.0927 11 6 1.1915 -4.7990 -0.2719 12 6 0.0700 -4.7467 -1.1093 13 6 -0.6136 -5.9936 -1.5015 14 8 -0.2034 -7.0641 -1.0986 15 8 -1.6927 -5.9457 -2.3076 16 6 -2.3144 -7.2116 -2.6529 17 6 -3.5146 -6.9578 -3.5671 18 16 -4.2909 -8.5395 -3.9991 19 6 -5.6288 -8.0538 -5.0377 20 6 -6.4753 -9.0144 -5.5781 21 6 -7.5231 -8.6300 -6.3912 22 6 -7.7309 -7.2909 -6.6677 23 6 -6.8904 -6.3323 -6.1317 24 6 -5.8400 -6.7092 -5.3186 25 6 -0.4009 -3.5145 -1.5801 26 6 0.2246 -2.3594 -1.2163 27 1 -0.4850 0.8401 0.0004 28 1 2.6916 -3.6908 0.7381 29 1 1.5541 -5.7518 0.0848 30 1 -2.6497 -7.7115 -1.7441 31 1 -1.5911 -7.8429 -3.1690 32 1 -3.1797 -6.4578 -4.4760 33 1 -4.2378 -6.3267 -3.0506 34 1 -6.3113 -10.0606 -5.3659 35 1 -8.1811 -9.3760 -6.8118 36 1 -8.5509 -6.9933 -7.3043 37 1 -7.0555 -5.2874 -6.3500 38 1 -5.1839 -5.9600 -4.9007 39 1 -1.2636 -3.4792 -2.2289 40 1 -0.1414 -1.4094 -1.5767 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000784403749.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:39 Heat of formation + Delta-G solvation = -63.674873 kcal Electronic energy + Delta-G solvation = -22875.868012 eV Core-core repulsion = 19324.473595 eV Total energy + Delta-G solvation = -3551.394417 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.092 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.31784 -39.85093 -39.30838 -37.49867 -35.76572 -33.35319 -32.17922 -31.93165 -31.69579 -31.38906 -28.05735 -25.32665 -24.00176 -23.63628 -23.05950 -22.81185 -21.75648 -19.41622 -18.86519 -18.68686 -17.87174 -17.64587 -17.23710 -17.07605 -16.04247 -15.79482 -15.67150 -15.62195 -15.36746 -15.12664 -14.62637 -14.40052 -14.16992 -14.11648 -13.94481 -13.71063 -13.45946 -13.21963 -13.16182 -12.87899 -12.67178 -12.43494 -12.40981 -12.08218 -11.82537 -11.70151 -11.44666 -11.34003 -11.26071 -11.14665 -10.77459 -9.97162 -9.64808 -9.54880 -8.86258 -8.51409 -6.56516 0.13761 0.20807 0.21320 0.38570 1.12562 1.22688 1.36115 1.41370 1.54381 1.86122 1.98662 2.14572 2.66224 2.73947 3.48466 3.59083 3.62955 3.89093 3.97739 4.06609 4.20024 4.24165 4.34692 4.37881 4.40329 4.48162 4.53508 4.56702 4.76563 4.91602 4.97196 5.03985 5.10341 5.20728 5.27293 5.34206 5.43070 5.54280 5.54520 5.79353 5.89534 5.94955 5.95682 6.13747 6.47859 6.68937 6.80668 6.95400 8.08407 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.017833 B = 0.002063 C = 0.001860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.763669 B =13569.628733 C =15049.226876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.035 3.965 3 Si 0.992 3.008 4 H -0.259 1.259 5 H -0.265 1.265 6 H -0.254 1.254 7 C -0.456 4.456 8 H 0.093 0.907 9 C 0.104 3.896 10 C -0.249 4.249 11 C -0.023 4.023 12 C -0.291 4.291 13 C 0.522 3.478 14 O -0.568 6.568 15 O -0.356 6.356 16 C 0.083 3.917 17 C -0.102 4.102 18 S -0.108 6.108 19 C -0.100 4.100 20 C -0.113 4.113 21 C -0.103 4.103 22 C -0.126 4.126 23 C -0.108 4.108 24 C -0.149 4.149 25 C -0.039 4.039 26 C -0.203 4.203 27 H 0.300 0.700 28 H 0.114 0.886 29 H 0.112 0.888 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.107 0.893 33 H 0.106 0.894 34 H 0.135 0.865 35 H 0.154 0.846 36 H 0.151 0.849 37 H 0.144 0.856 38 H 0.126 0.874 39 H 0.119 0.881 40 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.725 -7.379 -11.706 19.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.186 4.186 3 Si 0.811 3.189 4 H -0.183 1.183 5 H -0.189 1.189 6 H -0.178 1.178 7 C -0.483 4.483 8 H 0.111 0.889 9 C 0.100 3.900 10 C -0.268 4.268 11 C -0.041 4.041 12 C -0.294 4.294 13 C 0.374 3.626 14 O -0.463 6.463 15 O -0.274 6.274 16 C 0.008 3.992 17 C -0.250 4.250 18 S 0.135 5.865 19 C -0.213 4.213 20 C -0.136 4.136 21 C -0.123 4.123 22 C -0.146 4.146 23 C -0.127 4.127 24 C -0.173 4.173 25 C -0.057 4.057 26 C -0.222 4.222 27 H 0.111 0.889 28 H 0.132 0.868 29 H 0.130 0.870 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.126 0.874 33 H 0.125 0.875 34 H 0.153 0.847 35 H 0.172 0.828 36 H 0.169 0.831 37 H 0.162 0.838 38 H 0.144 0.856 39 H 0.137 0.863 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -13.417 -8.641 -11.156 19.472 hybrid contribution 0.001 1.611 -0.086 1.613 sum -13.416 -7.030 -11.242 18.863 Atomic orbital electron populations 1.69763 1.09440 1.32041 1.29967 1.27049 0.95569 1.05173 0.90758 0.85039 0.79139 0.74814 0.79915 1.18305 1.18913 1.17760 1.20262 0.98976 0.91938 1.37083 0.88856 1.18218 0.90991 0.93197 0.87581 1.20861 1.05290 0.92270 1.08394 1.20515 0.92581 0.97726 0.93324 1.18412 1.04901 0.89916 1.16176 1.21341 0.77238 0.89514 0.74507 1.90692 1.66663 1.32553 1.56390 1.86526 1.42520 1.35677 1.62671 1.22506 0.93723 0.83952 0.99056 1.23425 0.99259 0.98739 1.03581 1.85408 1.30803 1.11461 1.58814 1.21858 0.99718 0.97242 1.02491 1.21004 0.95241 0.98957 0.98441 1.21456 0.96814 0.97198 0.96797 1.21599 1.00045 0.92911 1.00079 1.21408 0.94082 1.01138 0.96106 1.21432 1.00432 0.94206 1.01226 1.20777 0.97284 0.91452 0.96233 1.21025 1.00798 0.97238 1.03155 0.88858 0.86784 0.87041 0.90743 0.90584 0.87407 0.87530 0.84702 0.82806 0.83102 0.83829 0.85593 0.86320 0.86719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -36.84 10.96 21.88 0.24 -36.60 16 2 C 0.04 1.56 5.14 85.36 0.44 2.00 16 3 Si 0.99 33.33 29.60 68.60 2.03 35.36 16 4 H -0.26 -8.47 7.11 99.48 0.71 -7.76 16 5 H -0.26 -8.45 7.11 99.48 0.71 -7.74 16 6 H -0.25 -8.33 7.11 99.48 0.71 -7.62 16 7 C -0.46 -22.15 9.04 23.46 0.21 -21.93 16 8 H 0.09 4.27 7.91 -2.91 -0.02 4.25 16 9 C 0.10 5.26 5.57 -21.28 -0.12 5.14 16 10 C -0.25 -11.92 9.73 22.47 0.22 -11.70 16 11 C -0.02 -1.07 9.52 22.26 0.21 -0.86 16 12 C -0.29 -13.64 5.89 -19.95 -0.12 -13.76 16 13 C 0.52 22.84 7.89 70.27 0.55 23.39 16 14 O -0.57 -26.46 16.11 19.80 0.32 -26.14 16 15 O -0.36 -13.23 9.45 -56.87 -0.54 -13.77 16 16 C 0.08 2.46 5.48 71.98 0.39 2.85 16 17 C -0.10 -2.37 4.71 71.98 0.34 -2.03 16 18 S -0.11 -2.42 21.92 -56.49 -1.24 -3.66 16 19 C -0.10 -2.08 6.11 22.62 0.14 -1.94 16 20 C -0.11 -1.97 9.79 22.41 0.22 -1.75 16 21 C -0.10 -1.38 10.04 22.25 0.22 -1.16 16 22 C -0.13 -1.63 10.04 22.30 0.22 -1.41 16 23 C -0.11 -1.68 10.04 22.25 0.22 -1.45 16 24 C -0.15 -2.90 9.36 22.41 0.21 -2.69 16 25 C -0.04 -1.79 9.54 22.26 0.21 -1.58 16 26 C -0.20 -10.09 8.63 22.47 0.19 -9.90 16 27 H 0.30 12.37 8.29 -92.71 -0.77 11.60 16 28 H 0.11 5.01 8.06 -2.91 -0.02 4.99 16 29 H 0.11 4.94 7.63 -2.91 -0.02 4.92 16 30 H 0.07 2.22 8.14 -2.38 -0.02 2.20 16 31 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 32 H 0.11 2.34 7.75 -2.39 -0.02 2.32 16 33 H 0.11 2.35 7.75 -2.39 -0.02 2.33 16 34 H 0.14 2.03 8.06 -2.91 -0.02 2.01 16 35 H 0.15 1.16 8.06 -2.91 -0.02 1.14 16 36 H 0.15 1.10 8.06 -2.91 -0.02 1.08 16 37 H 0.14 1.64 8.06 -2.91 -0.02 1.62 16 38 H 0.13 2.35 5.88 -2.91 -0.02 2.33 16 39 H 0.12 4.92 7.59 -2.91 -0.02 4.90 16 40 H 0.11 5.77 6.16 -2.91 -0.02 5.75 16 Total: -1.00 -58.71 361.43 5.65 -53.06 By element: Atomic # 1 Polarization: 29.47 SS G_CDS: 1.06 Total: 30.52 kcal Atomic # 6 Polarization: -42.56 SS G_CDS: 3.78 Total: -38.78 kcal Atomic # 7 Polarization: -36.84 SS G_CDS: 0.24 Total: -36.60 kcal Atomic # 8 Polarization: -39.69 SS G_CDS: -0.22 Total: -39.91 kcal Atomic # 14 Polarization: 33.33 SS G_CDS: 2.03 Total: 35.36 kcal Atomic # 16 Polarization: -2.42 SS G_CDS: -1.24 Total: -3.66 kcal Total: -58.71 5.65 -53.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784403749.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.614 kcal (2) G-P(sol) polarization free energy of solvation -58.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds