Wall clock time and date at job start Tue Mar 31 2020 15:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30008 * 127.33943 * 2 1 4 4 O 1.20653 * 112.30661 * 179.97438 * 3 2 1 5 5 C 1.33496 * 113.15346 * 359.75703 * 4 3 2 6 6 C 1.50705 * 126.82826 * 180.30364 * 5 4 3 7 7 C 1.53001 * 117.49772 * 8.72435 * 6 5 4 8 8 C 1.53002 * 117.49693 * 300.10210 * 6 5 4 9 9 C 1.37359 * 106.34122 * 0.38832 * 5 4 3 10 10 C 1.47395 * 128.56180 * 179.91511 * 9 5 4 11 11 O 1.21608 * 119.99994 * 269.69680 * 10 9 5 12 12 N 1.34774 * 120.00306 * 89.69884 * 10 9 5 13 13 S 1.65599 * 120.00089 * 179.97438 * 12 10 9 14 14 O 1.42105 * 104.27797 * 181.07312 * 13 12 10 15 15 O 1.42101 * 104.27901 * 308.93020 * 13 12 10 16 16 C 1.81397 * 104.44825 * 65.00200 * 13 12 10 17 17 C 1.53009 * 109.47235 * 179.97438 * 16 13 12 18 18 C 1.50697 * 109.46948 * 179.97438 * 17 16 13 19 19 H 1.07997 * 120.00322 * 0.02562 * 18 17 16 20 20 C 1.37880 * 119.99943 * 179.97438 * 18 17 16 21 21 N 1.31518 * 119.99809 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00266 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.46833 * 90.00160 * 22 20 18 24 24 H 1.48496 * 109.47064 * 210.00215 * 22 20 18 25 25 H 1.48500 * 109.47150 * 330.00047 * 22 20 18 26 26 H 1.08999 * 109.47561 * 270.00198 * 1 2 3 27 27 H 1.08998 * 109.46860 * 30.00357 * 1 2 3 28 28 H 1.09001 * 109.46800 * 149.99690 * 1 2 3 29 29 H 1.08997 * 115.54764 * 154.43413 * 6 5 4 30 30 H 1.09001 * 117.50114 * 359.97438 * 7 6 5 31 31 H 1.08998 * 117.49711 * 145.02385 * 7 6 5 32 32 H 1.09000 * 117.49939 * 214.98508 * 8 6 5 33 33 H 1.09005 * 117.49375 * 359.97438 * 8 6 5 34 34 H 0.96999 * 119.99865 * 0.02562 * 12 10 9 35 35 H 1.09004 * 109.47032 * 299.99803 * 16 13 12 36 36 H 1.09000 * 109.47124 * 60.00075 * 16 13 12 37 37 H 1.08995 * 109.47216 * 300.00010 * 17 16 13 38 38 H 1.09000 * 109.46805 * 60.00123 * 17 16 13 39 39 H 0.97001 * 119.99986 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2956 1.0336 0.0000 4 8 3.4608 0.7207 0.0005 5 6 3.6494 -0.6009 0.0061 6 6 4.9712 -1.3247 0.0147 7 6 6.2342 -0.4867 0.2232 8 6 5.9230 -1.0713 -1.1561 9 6 2.3991 -1.1697 0.0006 10 6 2.0401 -2.5992 0.0016 11 8 1.8922 -3.1898 -1.0511 12 7 1.8756 -3.2519 1.1692 13 16 1.4716 -4.8579 1.1703 14 8 1.3610 -5.1905 2.5475 15 8 0.3472 -4.9370 0.3050 16 6 2.9052 -5.6857 0.4287 17 6 2.6513 -7.1936 0.3736 18 6 3.8420 -7.8812 -0.2431 19 1 4.6947 -7.3010 -0.5634 20 6 3.8433 -9.2514 -0.3975 21 7 2.8052 -9.9581 -0.0070 22 14 5.3195 -10.1039 -1.1614 23 1 6.2849 -10.4723 -0.0948 24 1 4.8716 -11.3303 -1.8688 25 1 5.9755 -9.1868 -2.1277 26 1 -0.3634 0.0000 1.0276 27 1 -0.3633 0.8899 -0.5139 28 1 -0.3633 -0.8900 -0.5139 29 1 4.9555 -2.3270 0.4426 30 1 6.1092 0.5882 0.3538 31 1 7.0497 -0.9377 0.7886 32 1 6.5338 -1.9068 -1.4982 33 1 5.5929 -0.3813 -1.9327 34 1 1.9932 -2.7808 2.0090 35 1 3.0617 -5.3062 -0.5811 36 1 3.7911 -5.4886 1.0323 37 1 2.4951 -7.5729 1.3835 38 1 1.7653 -7.3911 -0.2298 39 1 2.8059 -10.9219 -0.1160 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000784920477.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:40:14 Heat of formation + Delta-G solvation = -29.906311 kcal Electronic energy + Delta-G solvation = -25948.079568 eV Core-core repulsion = 21987.300202 eV Total energy + Delta-G solvation = -3960.779366 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -45.23379 -40.07637 -37.80761 -36.80299 -35.71935 -34.98250 -34.45883 -33.95061 -32.04183 -31.24004 -29.12038 -25.83081 -25.51909 -23.98166 -22.83708 -21.94028 -21.62065 -19.99158 -19.51046 -18.66115 -18.05801 -17.64382 -17.04921 -16.60456 -16.35304 -15.74659 -15.30949 -15.06926 -14.81979 -14.58553 -14.21843 -13.69392 -13.68385 -13.52460 -13.28129 -12.64841 -12.53397 -12.46091 -11.99918 -11.88772 -11.82731 -11.81024 -11.71338 -11.54867 -11.13032 -11.07492 -10.98601 -10.89244 -10.69663 -10.44933 -10.40418 -10.25990 -9.77276 -9.56907 -9.23993 -8.53312 -6.15597 -4.21399 0.35273 0.89141 1.56170 1.72438 2.36534 2.69663 3.24442 3.30983 3.31239 3.33772 3.64511 3.76124 3.94961 4.11313 4.23809 4.34207 4.41356 4.45889 4.54501 4.77362 4.84189 5.01026 5.15830 5.19703 5.19915 5.23487 5.31007 5.45548 5.50008 5.55782 5.63171 5.67621 5.72153 6.36687 6.47451 7.21264 7.24133 7.29780 7.76985 7.86371 8.12116 8.81349 9.43390 10.95491 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.013915 B = 0.003738 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2011.798404 B = 7489.732342 C = 8907.007995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.064 3.936 3 N -0.352 5.352 4 O 0.099 5.901 5 C 0.064 3.936 6 C -0.105 4.105 7 C -0.159 4.159 8 C -0.153 4.153 9 C -0.256 4.256 10 C 0.625 3.375 11 O -0.467 6.467 12 N -1.051 6.051 13 S 2.561 3.439 14 O -0.949 6.949 15 O -0.934 6.934 16 C -0.575 4.575 17 C 0.030 3.970 18 C -0.520 4.520 19 H 0.062 0.938 20 C 0.059 3.941 21 N -0.890 5.890 22 Si 0.901 3.099 23 H -0.279 1.279 24 H -0.284 1.284 25 H -0.272 1.272 26 H 0.089 0.911 27 H 0.086 0.914 28 H 0.089 0.911 29 H 0.143 0.857 30 H 0.106 0.894 31 H 0.111 0.889 32 H 0.114 0.886 33 H 0.103 0.897 34 H 0.431 0.569 35 H 0.132 0.868 36 H 0.123 0.877 37 H 0.035 0.965 38 H 0.037 0.963 39 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.717 21.785 2.341 22.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.099 4.099 3 N -0.059 5.059 4 O 0.038 5.962 5 C 0.000 4.000 6 C -0.124 4.124 7 C -0.196 4.196 8 C -0.190 4.190 9 C -0.265 4.265 10 C 0.408 3.592 11 O -0.336 6.336 12 N -0.811 5.811 13 S 2.662 3.338 14 O -0.940 6.940 15 O -0.924 6.924 16 C -0.710 4.710 17 C -0.010 4.010 18 C -0.559 4.559 19 H 0.081 0.919 20 C -0.144 4.144 21 N -0.528 5.528 22 Si 0.728 3.272 23 H -0.205 1.205 24 H -0.210 1.210 25 H -0.197 1.197 26 H 0.107 0.893 27 H 0.105 0.895 28 H 0.108 0.892 29 H 0.161 0.839 30 H 0.125 0.875 31 H 0.130 0.870 32 H 0.132 0.868 33 H 0.122 0.878 34 H 0.266 0.734 35 H 0.150 0.850 36 H 0.141 0.859 37 H 0.053 0.947 38 H 0.055 0.945 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.476 22.199 1.889 22.416 hybrid contribution 1.205 -1.004 -0.121 1.573 sum 3.681 21.195 1.768 21.585 Atomic orbital electron populations 1.20333 0.84775 1.04873 1.04204 1.24745 0.98689 0.86018 1.00406 1.73635 0.88925 1.23018 1.20355 1.84519 1.21593 1.22107 1.67948 1.23557 0.95305 0.83533 0.97589 1.20642 0.83987 0.99751 1.08056 1.23126 0.96519 1.00166 0.99760 1.23170 1.00126 1.04044 0.91640 1.21651 0.93017 0.94764 1.17032 1.16716 0.74433 0.85013 0.83002 1.91044 1.44917 1.67565 1.30102 1.55487 1.77901 1.33031 1.14694 1.06912 0.78845 0.72683 0.75375 1.93604 1.87018 1.80824 1.32504 1.93606 1.47629 1.83424 1.67791 1.30354 1.15541 1.12439 1.12624 1.19005 0.99756 0.82945 0.99262 1.20954 1.01745 0.91841 1.41392 0.91932 1.25062 0.96486 0.97479 0.95387 1.69952 1.29358 1.06940 1.46509 0.86446 0.82269 0.79107 0.79337 1.20453 1.20963 1.19703 0.89265 0.89548 0.89210 0.83916 0.87544 0.87045 0.86763 0.87848 0.73415 0.84966 0.85899 0.94681 0.94498 0.92461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.75 10.49 36.01 0.38 -0.37 16 2 C 0.06 0.72 7.59 -79.77 -0.61 0.12 16 3 N -0.35 -4.12 12.01 34.78 0.42 -3.70 16 4 O 0.10 1.06 10.86 18.64 0.20 1.26 16 5 C 0.06 0.66 7.00 -34.63 -0.24 0.42 16 6 C -0.11 -0.86 6.15 -91.77 -0.56 -1.42 16 7 C -0.16 -0.94 10.18 -26.73 -0.27 -1.21 16 8 C -0.15 -1.07 10.23 -26.73 -0.27 -1.34 16 9 C -0.26 -3.06 6.24 -102.89 -0.64 -3.71 16 10 C 0.62 8.78 7.37 -12.53 -0.09 8.68 16 11 O -0.47 -8.26 15.20 -11.85 -0.18 -8.44 16 12 N -1.05 -13.43 5.60 30.42 0.17 -13.26 16 13 S 2.56 45.18 5.11 -107.50 -0.55 44.63 16 14 O -0.95 -18.18 18.08 -57.54 -1.04 -19.22 16 15 O -0.93 -19.87 17.04 -64.79 -1.10 -20.98 16 16 C -0.57 -10.91 5.82 37.16 0.22 -10.69 16 17 C 0.03 0.74 4.98 -27.88 -0.14 0.61 16 18 C -0.52 -14.13 9.11 -34.44 -0.31 -14.44 16 19 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 20 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 21 N -0.89 -26.12 13.29 55.43 0.74 -25.38 16 22 Si 0.90 20.90 29.54 -169.99 -5.02 15.88 16 23 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 25 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 26 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.14 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.11 0.59 8.02 -51.93 -0.42 0.17 16 31 H 0.11 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.43 3.86 8.77 -34.47 -0.30 3.55 16 35 H 0.13 2.45 7.19 -51.92 -0.37 2.08 16 36 H 0.12 1.94 8.14 -51.92 -0.42 1.52 16 37 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 360.13 15.07 5.43 5.43 Total: -1.00 -36.24 360.13 -8.45 -44.69 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -4.86 Total: 0.90 kcal Atomic # 6 Polarization: -19.17 SS G_CDS: -2.65 Total: -21.82 kcal Atomic # 7 Polarization: -43.67 SS G_CDS: 1.32 Total: -42.34 kcal Atomic # 8 Polarization: -45.26 SS G_CDS: -2.12 Total: -47.38 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Atomic # 16 Polarization: 45.18 SS G_CDS: -0.55 Total: 44.63 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -36.24 -8.45 -44.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784920477.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.788 kcal (2) G-P(sol) polarization free energy of solvation -36.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds