Wall clock time and date at job start Tue Mar 31 2020 15:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30008 * 127.33943 * 2 1 4 4 O 1.20653 * 112.30661 * 179.97438 * 3 2 1 5 5 C 1.33496 * 113.15346 * 359.75703 * 4 3 2 6 6 C 1.50705 * 126.82826 * 180.30364 * 5 4 3 7 7 C 1.53001 * 117.49772 * 8.72435 * 6 5 4 8 8 C 1.53002 * 117.49693 * 300.10210 * 6 5 4 9 9 C 1.37359 * 106.34122 * 0.38832 * 5 4 3 10 10 C 1.47395 * 128.56180 * 179.91511 * 9 5 4 11 11 O 1.21608 * 119.99994 * 269.69680 * 10 9 5 12 12 N 1.34774 * 120.00306 * 89.69884 * 10 9 5 13 13 S 1.65599 * 120.00089 * 179.97438 * 12 10 9 14 14 O 1.42105 * 104.27797 * 181.07312 * 13 12 10 15 15 O 1.42101 * 104.27901 * 308.93020 * 13 12 10 16 16 C 1.81397 * 104.44825 * 65.00200 * 13 12 10 17 17 C 1.53009 * 109.47235 * 179.97438 * 16 13 12 18 18 C 1.50697 * 109.46948 * 179.97438 * 17 16 13 19 19 H 1.07997 * 120.00322 * 0.02562 * 18 17 16 20 20 C 1.37880 * 119.99943 * 179.97438 * 18 17 16 21 21 N 1.31518 * 119.99809 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00266 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.46833 * 90.00160 * 22 20 18 24 24 H 1.48496 * 109.47064 * 210.00215 * 22 20 18 25 25 H 1.48500 * 109.47150 * 330.00047 * 22 20 18 26 26 H 1.08999 * 109.47561 * 270.00198 * 1 2 3 27 27 H 1.08998 * 109.46860 * 30.00357 * 1 2 3 28 28 H 1.09001 * 109.46800 * 149.99690 * 1 2 3 29 29 H 1.08997 * 115.54764 * 154.43413 * 6 5 4 30 30 H 1.09001 * 117.50114 * 359.97438 * 7 6 5 31 31 H 1.08998 * 117.49711 * 145.02385 * 7 6 5 32 32 H 1.09000 * 117.49939 * 214.98508 * 8 6 5 33 33 H 1.09005 * 117.49375 * 359.97438 * 8 6 5 34 34 H 0.96999 * 119.99865 * 0.02562 * 12 10 9 35 35 H 1.09004 * 109.47032 * 299.99803 * 16 13 12 36 36 H 1.09000 * 109.47124 * 60.00075 * 16 13 12 37 37 H 1.08995 * 109.47216 * 300.00010 * 17 16 13 38 38 H 1.09000 * 109.46805 * 60.00123 * 17 16 13 39 39 H 0.97001 * 119.99986 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2956 1.0336 0.0000 4 8 3.4608 0.7207 0.0005 5 6 3.6494 -0.6009 0.0061 6 6 4.9712 -1.3247 0.0147 7 6 6.2342 -0.4867 0.2232 8 6 5.9230 -1.0713 -1.1561 9 6 2.3991 -1.1697 0.0006 10 6 2.0401 -2.5992 0.0016 11 8 1.8922 -3.1898 -1.0511 12 7 1.8756 -3.2519 1.1692 13 16 1.4716 -4.8579 1.1703 14 8 1.3610 -5.1905 2.5475 15 8 0.3472 -4.9370 0.3050 16 6 2.9052 -5.6857 0.4287 17 6 2.6513 -7.1936 0.3736 18 6 3.8420 -7.8812 -0.2431 19 1 4.6947 -7.3010 -0.5634 20 6 3.8433 -9.2514 -0.3975 21 7 2.8052 -9.9581 -0.0070 22 14 5.3195 -10.1039 -1.1614 23 1 6.2849 -10.4723 -0.0948 24 1 4.8716 -11.3303 -1.8688 25 1 5.9755 -9.1868 -2.1277 26 1 -0.3634 0.0000 1.0276 27 1 -0.3633 0.8899 -0.5139 28 1 -0.3633 -0.8900 -0.5139 29 1 4.9555 -2.3270 0.4426 30 1 6.1092 0.5882 0.3538 31 1 7.0497 -0.9377 0.7886 32 1 6.5338 -1.9068 -1.4982 33 1 5.5929 -0.3813 -1.9327 34 1 1.9932 -2.7808 2.0090 35 1 3.0617 -5.3062 -0.5811 36 1 3.7911 -5.4886 1.0323 37 1 2.4951 -7.5729 1.3835 38 1 1.7653 -7.3911 -0.2298 39 1 2.8059 -10.9219 -0.1160 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000784920477.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:40:13 Heat of formation + Delta-G solvation = -55.824758 kcal Electronic energy + Delta-G solvation = -25949.203476 eV Core-core repulsion = 21987.300202 eV Total energy + Delta-G solvation = -3961.903274 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -46.08906 -41.28230 -38.41732 -38.32494 -37.29738 -36.04045 -35.87880 -35.52127 -33.18384 -32.87371 -29.87673 -27.67195 -26.63740 -24.67677 -23.69488 -23.32996 -22.81479 -20.91028 -20.76307 -19.72048 -19.28547 -18.83849 -18.38560 -17.89209 -17.44217 -17.03867 -16.70249 -16.54824 -16.21072 -15.92316 -15.22367 -15.04065 -14.48590 -14.43168 -14.36088 -14.02095 -13.99828 -13.77661 -13.43129 -13.32063 -13.11696 -12.94149 -12.84956 -12.65396 -12.42767 -12.38064 -12.28117 -12.21829 -12.09006 -11.90822 -11.71729 -11.45185 -11.11713 -11.09500 -10.63669 -10.34881 -8.25670 -6.39467 -1.11746 0.05470 0.57799 0.69311 1.25568 1.42540 1.44581 1.55553 1.70138 2.37452 2.48667 2.71059 2.78885 2.99984 3.03607 3.08487 3.25783 3.52120 3.70722 3.80040 3.94453 3.96497 4.01753 4.06539 4.35672 4.39529 4.53396 4.63526 4.68092 4.78379 4.92282 5.02187 5.06682 5.22379 5.23135 5.23401 5.44825 5.68114 6.04220 6.11474 6.73261 7.02987 7.30613 8.86744 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.013915 B = 0.003738 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2011.798404 B = 7489.732342 C = 8907.007995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.062 3.938 3 N -0.366 5.366 4 O 0.100 5.900 5 C 0.085 3.915 6 C -0.130 4.130 7 C -0.138 4.138 8 C -0.156 4.156 9 C -0.281 4.281 10 C 0.635 3.365 11 O -0.505 6.505 12 N -1.028 6.028 13 S 2.594 3.406 14 O -0.963 6.963 15 O -0.973 6.973 16 C -0.575 4.575 17 C 0.022 3.978 18 C -0.538 4.538 19 H 0.077 0.923 20 C -0.002 4.002 21 N -0.933 5.933 22 Si 0.974 3.026 23 H -0.267 1.267 24 H -0.285 1.285 25 H -0.259 1.259 26 H 0.108 0.892 27 H 0.100 0.900 28 H 0.080 0.920 29 H 0.150 0.850 30 H 0.111 0.889 31 H 0.130 0.870 32 H 0.122 0.878 33 H 0.100 0.900 34 H 0.450 0.550 35 H 0.138 0.862 36 H 0.158 0.842 37 H 0.017 0.983 38 H 0.005 0.995 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.924 23.346 2.606 24.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.100 4.100 3 N -0.074 5.074 4 O 0.041 5.959 5 C 0.021 3.979 6 C -0.149 4.149 7 C -0.175 4.175 8 C -0.193 4.193 9 C -0.291 4.291 10 C 0.421 3.579 11 O -0.377 6.377 12 N -0.794 5.794 13 S 2.694 3.306 14 O -0.953 6.953 15 O -0.963 6.963 16 C -0.709 4.709 17 C -0.017 4.017 18 C -0.577 4.577 19 H 0.095 0.905 20 C -0.201 4.201 21 N -0.573 5.573 22 Si 0.797 3.203 23 H -0.193 1.193 24 H -0.210 1.210 25 H -0.183 1.183 26 H 0.127 0.873 27 H 0.118 0.882 28 H 0.099 0.901 29 H 0.168 0.832 30 H 0.130 0.870 31 H 0.148 0.852 32 H 0.140 0.860 33 H 0.118 0.882 34 H 0.290 0.710 35 H 0.156 0.844 36 H 0.176 0.824 37 H 0.035 0.965 38 H 0.024 0.976 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.706 23.781 2.187 24.341 hybrid contribution 0.522 -1.387 -0.180 1.493 sum 5.228 22.394 2.007 23.084 Atomic orbital electron populations 1.20473 0.83421 1.05090 1.05537 1.25103 0.99665 0.85580 0.99645 1.73630 0.89222 1.23235 1.21307 1.84511 1.21331 1.22185 1.67843 1.23927 0.95686 0.83249 0.95070 1.20899 0.83734 1.00458 1.09809 1.23251 0.95244 1.00267 0.98689 1.23271 0.99606 1.04487 0.91938 1.21426 0.94142 0.93507 1.19996 1.16909 0.73105 0.85646 0.82281 1.91031 1.46643 1.68525 1.31465 1.54917 1.77381 1.31279 1.15783 1.05662 0.77565 0.73243 0.74176 1.93581 1.86984 1.81807 1.32976 1.93560 1.49312 1.84598 1.68800 1.30234 1.18017 1.08492 1.14145 1.18851 0.98260 0.87194 0.97424 1.21468 1.02637 0.92531 1.41066 0.90452 1.26096 0.99593 0.98513 0.95868 1.70096 1.31785 1.07308 1.48084 0.85311 0.78451 0.77768 0.78734 1.19250 1.21046 1.18266 0.87343 0.88165 0.90131 0.83223 0.87021 0.85167 0.85953 0.88158 0.70972 0.84412 0.82381 0.96494 0.97622 0.92356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.45 10.49 71.24 0.75 -0.70 16 2 C 0.06 1.34 7.59 45.16 0.34 1.68 16 3 N -0.37 -8.02 12.01 -44.78 -0.54 -8.56 16 4 O 0.10 1.98 10.86 76.96 0.84 2.81 16 5 C 0.08 1.60 7.00 25.48 0.18 1.78 16 6 C -0.13 -1.82 6.15 -11.54 -0.07 -1.89 16 7 C -0.14 -1.21 10.18 30.60 0.31 -0.90 16 8 C -0.16 -1.82 10.23 30.60 0.31 -1.51 16 9 C -0.28 -6.39 6.24 -18.75 -0.12 -6.51 16 10 C 0.64 17.28 7.37 86.65 0.64 17.92 16 11 O -0.50 -17.82 15.20 12.31 0.19 -17.63 16 12 N -1.03 -25.00 5.60 -175.91 -0.99 -25.98 16 13 S 2.59 90.94 5.11 -56.49 -0.29 90.65 16 14 O -0.96 -36.39 18.08 -127.65 -2.31 -38.69 16 15 O -0.97 -42.14 17.04 -120.72 -2.06 -44.19 16 16 C -0.58 -21.58 5.82 71.99 0.42 -21.16 16 17 C 0.02 1.12 4.98 29.85 0.15 1.27 16 18 C -0.54 -29.29 9.11 25.60 0.23 -29.06 16 19 H 0.08 3.86 7.74 -2.91 -0.02 3.84 16 20 C 0.00 -0.12 5.46 84.65 0.46 0.35 16 21 N -0.93 -56.05 13.29 21.45 0.28 -55.76 16 22 Si 0.97 42.56 29.54 68.60 2.03 44.58 16 23 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 24 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 25 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 26 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.15 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.11 0.90 8.02 -2.39 -0.02 0.88 16 31 H 0.13 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.10 1.23 8.14 -2.38 -0.02 1.21 16 34 H 0.45 7.18 8.77 -96.75 -0.85 6.33 16 35 H 0.14 5.05 7.19 -2.39 -0.02 5.03 16 36 H 0.16 4.69 8.14 -2.39 -0.02 4.67 16 37 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 39 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 Total: -1.00 -79.28 360.13 1.01 -78.26 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: 0.25 Total: 13.24 kcal Atomic # 6 Polarization: -42.34 SS G_CDS: 3.61 Total: -38.73 kcal Atomic # 7 Polarization: -89.07 SS G_CDS: -1.24 Total: -90.30 kcal Atomic # 8 Polarization: -94.37 SS G_CDS: -3.34 Total: -97.71 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.58 kcal Atomic # 16 Polarization: 90.94 SS G_CDS: -0.29 Total: 90.65 kcal Total: -79.28 1.01 -78.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784920477.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.440 kcal (2) G-P(sol) polarization free energy of solvation -79.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds