Wall clock time and date at job start Tue Mar 31 2020 14:51:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86794 * 120.00102 * 2 1 4 4 H 1.48497 * 109.47507 * 239.99943 * 3 2 1 5 5 H 1.48504 * 109.47349 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46963 * 119.99844 * 3 2 1 7 7 C 1.38701 * 119.99788 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00024 * 180.02562 * 7 2 1 9 9 O 1.34813 * 120.00240 * 359.97438 * 7 2 1 10 10 C 1.35504 * 117.00336 * 174.93697 * 9 7 2 11 11 C 1.38837 * 120.16263 * 5.59565 * 10 9 7 12 12 C 1.38027 * 120.07780 * 179.97438 * 11 10 9 13 13 C 1.38590 * 120.40963 * 0.02562 * 12 11 10 14 14 C 1.37804 * 120.33478 * 0.02562 * 13 12 11 15 15 C 1.39723 * 119.91132 * 359.70564 * 14 13 12 16 16 C 1.47406 * 120.20222 * 180.27304 * 15 14 13 17 17 O 1.21516 * 119.99747 * 180.27958 * 16 15 14 18 18 O 1.34755 * 119.99639 * 0.27620 * 16 15 14 19 19 C 1.45199 * 116.99642 * 180.02562 * 18 16 15 20 20 C 1.50697 * 109.47256 * 180.02562 * 19 18 16 21 21 O 1.21215 * 119.99829 * 359.97438 * 20 19 18 22 22 C 1.47530 * 120.00368 * 179.97438 * 20 19 18 23 23 C 1.39675 * 120.11838 * 179.97438 * 22 20 19 24 24 N 1.32063 * 119.84949 * 179.97438 * 23 22 20 25 25 C 1.32140 * 120.08324 * 0.02562 * 24 23 22 26 26 C 1.38826 * 120.23758 * 359.97438 * 25 24 23 27 27 N 1.31730 * 120.14879 * 359.72137 * 26 25 24 28 28 H 0.97001 * 119.99771 * 0.02562 * 1 2 3 29 29 H 1.07997 * 119.96445 * 359.95838 * 11 10 9 30 30 H 1.07992 * 119.79363 * 179.97438 * 12 11 10 31 31 H 1.08006 * 119.83156 * 180.02562 * 13 12 11 32 32 H 1.07998 * 120.03817 * 179.97438 * 14 13 12 33 33 H 1.09003 * 109.47016 * 299.99298 * 19 18 16 34 34 H 1.09001 * 109.47709 * 59.99778 * 19 18 16 35 35 H 1.07999 * 120.07677 * 359.97438 * 23 22 20 36 36 H 1.08003 * 119.88137 * 180.02562 * 25 24 23 37 37 H 1.07995 * 119.92724 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2843 2.7465 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0087 -1.2012 -0.0005 8 1 3.0887 -1.2013 -0.0001 9 8 1.3346 -2.3687 -0.0005 10 6 2.0684 -3.5028 -0.1076 11 6 3.4553 -3.4402 -0.0943 12 6 4.2011 -4.5965 -0.2029 13 6 3.5744 -5.8265 -0.3265 14 6 2.1989 -5.9082 -0.3427 15 6 1.4305 -4.7469 -0.2280 16 6 -0.0413 -4.8275 -0.2385 17 8 -0.7059 -3.8146 -0.1436 18 8 -0.6497 -6.0244 -0.3535 19 6 -2.1017 -6.0281 -0.3573 20 6 -2.6001 -7.4438 -0.4921 21 8 -1.8098 -8.3590 -0.5771 22 6 -4.0498 -7.7160 -0.5206 23 6 -4.5144 -9.0272 -0.6460 24 7 -5.8132 -9.2649 -0.6705 25 6 -6.6715 -8.2645 -0.5771 26 6 -6.2136 -6.9599 -0.4523 27 7 -4.9200 -6.7128 -0.4209 28 1 -0.4850 0.8401 -0.0004 29 1 3.9513 -2.4856 0.0010 30 1 5.2796 -4.5425 -0.1925 31 1 4.1671 -6.7255 -0.4105 32 1 1.7155 -6.8691 -0.4396 33 1 -2.4685 -5.6016 0.5764 34 1 -2.4644 -5.4334 -1.1956 35 1 -3.8130 -9.8449 -0.7228 36 1 -7.7330 -8.4626 -0.5970 37 1 -6.9195 -6.1461 -0.3759 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000791777430.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:50 Heat of formation + Delta-G solvation = -54.952377 kcal Electronic energy + Delta-G solvation = -26034.070072 eV Core-core repulsion = 21936.760676 eV Total energy + Delta-G solvation = -4097.309396 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.094 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.62053 -40.02947 -39.26636 -38.45423 -36.42757 -35.51889 -34.89461 -32.42545 -32.27560 -30.84519 -29.11664 -28.90841 -25.76625 -25.44665 -24.84719 -23.36460 -21.65629 -20.84859 -20.21401 -18.12032 -18.05850 -17.94495 -17.40220 -16.83244 -16.45610 -16.36577 -15.93490 -15.35334 -15.04533 -14.76747 -14.50501 -14.36705 -14.26477 -13.81618 -13.64849 -13.47606 -13.28345 -12.65746 -12.43636 -12.20696 -12.03981 -11.76767 -11.76018 -11.36738 -11.13889 -10.92401 -10.82673 -10.54609 -10.49384 -10.27383 -9.93338 -9.81284 -9.50182 -9.26616 -8.93967 -8.33459 -7.39199 -6.52512 -4.12288 -0.20205 0.57193 1.58405 1.84593 2.30755 2.68044 3.08056 3.10348 3.12582 3.26296 3.41099 3.47290 3.70265 3.86216 3.87797 4.10822 4.53279 4.53819 4.66843 4.91717 4.99966 5.03008 5.12285 5.29103 5.37677 5.50579 5.59554 5.74059 5.78474 6.02052 6.13148 6.55045 6.59548 6.64031 6.83963 6.93191 7.02396 7.08319 7.21545 7.23485 7.27941 7.65185 7.85900 8.63867 8.87505 9.56281 10.61087 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.014514 B = 0.002897 C = 0.002419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1928.642569 B = 9661.446231 C =11570.820362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.045 3.955 3 Si 0.943 3.057 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.268 1.268 7 C -0.403 4.403 8 H 0.096 0.904 9 O -0.125 6.125 10 C 0.192 3.808 11 C -0.239 4.239 12 C -0.042 4.042 13 C -0.234 4.234 14 C -0.014 4.014 15 C -0.216 4.216 16 C 0.499 3.501 17 O -0.473 6.473 18 O -0.353 6.353 19 C 0.037 3.963 20 C 0.419 3.581 21 O -0.412 6.412 22 C 0.003 3.997 23 C 0.108 3.892 24 N -0.443 5.443 25 C 0.078 3.922 26 C 0.052 3.948 27 N -0.395 5.395 28 H 0.273 0.727 29 H 0.134 0.866 30 H 0.113 0.887 31 H 0.113 0.887 32 H 0.127 0.873 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.183 0.817 36 H 0.178 0.822 37 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.488 -13.348 -1.056 15.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C -0.163 4.163 3 Si 0.767 3.233 4 H -0.193 1.193 5 H -0.201 1.201 6 H -0.193 1.193 7 C -0.479 4.479 8 H 0.113 0.887 9 O -0.023 6.023 10 C 0.132 3.868 11 C -0.258 4.258 12 C -0.061 4.061 13 C -0.253 4.253 14 C -0.032 4.032 15 C -0.219 4.219 16 C 0.344 3.656 17 O -0.359 6.359 18 O -0.272 6.272 19 C -0.038 4.038 20 C 0.291 3.709 21 O -0.281 6.281 22 C -0.135 4.135 23 C -0.050 4.050 24 N -0.157 5.157 25 C -0.083 4.083 26 C -0.111 4.111 27 N -0.113 5.113 28 H 0.083 0.917 29 H 0.152 0.848 30 H 0.131 0.869 31 H 0.131 0.869 32 H 0.145 0.855 33 H 0.127 0.873 34 H 0.127 0.873 35 H 0.200 0.800 36 H 0.195 0.805 37 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -8.711 -13.299 -1.039 15.932 hybrid contribution 0.173 0.994 0.023 1.009 sum -8.539 -12.305 -1.016 15.011 Atomic orbital electron populations 1.70108 1.06027 1.28053 1.42106 1.25412 0.95846 0.99043 0.95997 0.85762 0.78796 0.79430 0.79351 1.19275 1.20103 1.19286 1.21488 0.91999 0.80907 1.53481 0.88674 1.84136 1.33832 1.11160 1.73157 1.19216 0.90039 0.86916 0.90605 1.21104 0.92964 0.99491 1.12279 1.20979 0.98802 0.92278 0.94038 1.20556 0.94111 0.97247 1.13412 1.21017 0.93597 0.96357 0.92254 1.17955 0.87939 0.92592 1.23383 1.21173 0.89267 0.80513 0.74623 1.91018 1.65665 1.34949 1.44282 1.86569 1.19616 1.35155 1.85812 1.22838 0.80229 0.94868 1.05847 1.21987 0.85782 0.90756 0.72382 1.90582 1.56497 1.47383 1.33613 1.22546 0.96273 0.91887 1.02790 1.23989 0.93067 0.96656 0.91301 1.68635 1.02648 1.34994 1.09393 1.24237 1.01551 0.89908 0.92610 1.23998 0.92594 0.98079 0.96458 1.68512 1.03282 1.34131 1.05386 0.91664 0.84796 0.86926 0.86914 0.85530 0.87347 0.87331 0.79993 0.80456 0.80154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -24.45 13.67 55.48 0.76 -23.69 16 2 C 0.05 1.23 5.49 -17.51 -0.10 1.13 16 3 Si 0.94 20.03 29.55 -169.99 -5.02 15.01 16 4 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 5 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 6 H -0.27 -5.49 7.11 56.52 0.40 -5.08 16 7 C -0.40 -11.16 9.49 30.90 0.29 -10.86 16 8 H 0.10 2.37 5.21 -52.48 -0.27 2.10 16 9 O -0.12 -3.62 7.84 -21.01 -0.16 -3.78 16 10 C 0.19 4.74 6.66 -38.58 -0.26 4.48 16 11 C -0.24 -5.07 9.16 -39.44 -0.36 -5.44 16 12 C -0.04 -0.75 10.03 -39.53 -0.40 -1.14 16 13 C -0.23 -3.99 10.02 -39.61 -0.40 -4.39 16 14 C -0.01 -0.26 9.61 -39.19 -0.38 -0.64 16 15 C -0.22 -4.87 5.89 -104.83 -0.62 -5.49 16 16 C 0.50 11.41 7.89 34.46 0.27 11.68 16 17 O -0.47 -12.58 14.96 -26.59 -0.40 -12.98 16 18 O -0.35 -6.77 9.01 -47.33 -0.43 -7.19 16 19 C 0.04 0.59 5.46 36.00 0.20 0.78 16 20 C 0.42 5.67 7.21 -30.52 -0.22 5.45 16 21 O -0.41 -6.27 16.49 -14.05 -0.23 -6.50 16 22 C 0.00 0.04 6.73 -82.96 -0.56 -0.52 16 23 C 0.11 1.07 10.78 -16.92 -0.18 0.89 16 24 N -0.44 -4.08 10.49 -12.63 -0.13 -4.21 16 25 C 0.08 0.51 11.23 -17.20 -0.19 0.32 16 26 C 0.05 0.38 11.22 -17.38 -0.20 0.18 16 27 N -0.40 -4.29 9.96 -9.69 -0.10 -4.38 16 28 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 29 H 0.13 2.76 5.64 -52.49 -0.30 2.46 16 30 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 31 H 0.11 1.57 8.06 -52.48 -0.42 1.15 16 32 H 0.13 2.12 7.61 -52.49 -0.40 1.72 16 33 H 0.11 1.66 8.14 -51.93 -0.42 1.24 16 34 H 0.11 1.67 8.14 -51.93 -0.42 1.25 16 35 H 0.18 1.55 7.65 -52.49 -0.40 1.15 16 36 H 0.18 0.46 8.06 -52.48 -0.42 0.04 16 37 H 0.18 0.69 8.06 -52.49 -0.42 0.27 16 LS Contribution 343.07 15.07 5.17 5.17 Total: -1.00 -35.41 343.07 -6.67 -42.09 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -3.04 Total: 4.01 kcal Atomic # 6 Polarization: -0.46 SS G_CDS: -3.09 Total: -3.55 kcal Atomic # 7 Polarization: -32.81 SS G_CDS: 0.53 Total: -32.28 kcal Atomic # 8 Polarization: -29.23 SS G_CDS: -1.22 Total: -30.45 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -35.41 -6.67 -42.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000791777430.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.864 kcal (2) G-P(sol) polarization free energy of solvation -35.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds