Wall clock time and date at job start Tue Mar 31 2020 16:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47306 * 2 1 4 4 N 1.46897 * 109.47387 * 120.00327 * 2 1 3 5 5 C 1.46893 * 111.00089 * 273.23831 * 4 2 1 6 6 C 1.53003 * 109.47221 * 184.64056 * 5 4 2 7 7 C 1.50697 * 115.55213 * 271.54851 * 6 5 4 8 8 H 1.07999 * 120.00161 * 115.31589 * 7 6 5 9 9 C 1.37882 * 119.99810 * 295.31289 * 7 6 5 10 10 N 1.31518 * 120.00056 * 355.18848 * 9 7 6 11 11 Si 1.86799 * 119.99920 * 175.18983 * 9 7 6 12 12 H 1.48500 * 109.47255 * 89.99997 * 11 9 7 13 13 H 1.48503 * 109.46959 * 210.00462 * 11 9 7 14 14 H 1.48501 * 109.47151 * 329.99817 * 11 9 7 15 15 C 1.53003 * 117.49585 * 125.83717 * 6 5 4 16 16 C 1.52994 * 60.00076 * 252.51064 * 15 6 5 17 17 C 1.50706 * 109.46650 * 240.00385 * 2 1 3 18 18 C 1.38279 * 119.91969 * 285.10802 * 17 2 1 19 19 C 1.38222 * 120.08331 * 179.73128 * 18 17 2 20 20 Cl 1.73599 * 120.04203 * 180.27604 * 19 18 17 21 21 C 1.38959 * 119.91552 * 0.51915 * 19 18 17 22 22 N 1.39822 * 120.08021 * 179.77464 * 21 19 18 23 23 C 1.38963 * 119.83988 * 359.75373 * 21 19 18 24 24 Cl 1.73595 * 120.04358 * 180.02562 * 23 21 19 25 25 C 1.38222 * 119.91536 * 359.97438 * 23 21 19 26 26 H 1.08999 * 109.46700 * 299.99648 * 1 2 3 27 27 H 1.08994 * 109.47374 * 59.99877 * 1 2 3 28 28 H 1.09001 * 109.46983 * 180.02562 * 1 2 3 29 29 H 1.00902 * 110.99974 * 37.19963 * 4 2 1 30 30 H 1.09003 * 109.47127 * 64.64656 * 5 4 2 31 31 H 1.08999 * 109.47016 * 304.64385 * 5 4 2 32 32 H 0.96994 * 119.99811 * 185.02631 * 10 9 7 33 33 H 1.08996 * 117.49914 * 0.02562 * 15 6 5 34 34 H 1.09006 * 117.49211 * 145.02287 * 15 6 5 35 35 H 1.09004 * 117.50512 * 252.51159 * 16 15 6 36 36 H 1.09002 * 117.51862 * 107.47997 * 16 15 6 37 37 H 1.08000 * 119.95566 * 359.97438 * 18 17 2 38 38 H 0.97003 * 120.00451 * 179.97438 * 22 21 19 39 39 H 0.96998 * 120.00330 * 359.97438 * 22 21 19 40 40 H 1.07999 * 119.96268 * 179.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6925 1.1993 5 6 2.1222 0.2321 2.3362 6 6 2.7425 -0.4953 3.5308 7 6 1.7699 -1.2088 4.4340 8 1 1.8039 -2.2846 4.5218 9 6 0.8365 -0.4880 5.1484 10 7 0.8552 0.8267 5.1158 11 14 -0.4547 -1.3787 6.1627 12 1 0.0614 -1.5995 7.5375 13 1 -1.6900 -0.5567 6.2237 14 1 -0.7622 -2.6881 5.5331 15 6 3.9767 0.1357 4.1787 16 6 4.1200 -1.1313 3.3331 17 6 2.0322 -0.7104 -1.2306 18 6 1.9676 -2.0896 -1.3055 19 6 2.4221 -2.7443 -2.4348 20 17 2.3338 -4.4754 -2.5306 21 6 2.9545 -2.0153 -3.4913 22 7 3.4197 -2.6743 -4.6334 23 6 3.0231 -0.6297 -3.4102 24 17 3.6866 0.2862 -4.7271 25 6 2.5614 0.0183 -2.2799 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.4329 -1.4813 1.4264 30 1 1.1280 0.5893 2.6047 31 1 2.7504 1.0790 2.0602 32 1 0.2463 1.3344 5.6745 33 1 4.3464 1.0690 3.7542 34 1 4.0851 0.0348 5.2587 35 1 4.3227 -2.0657 3.8565 36 1 4.5840 -1.0320 2.3518 37 1 1.5578 -2.6558 -0.4821 38 1 3.7908 -2.1644 -5.3704 39 1 3.3713 -3.6415 -4.6888 40 1 2.6147 1.0951 -2.2159 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797587536.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:43:38 Heat of formation + Delta-G solvation = 26.956069 kcal Electronic energy + Delta-G solvation = -23142.648989 eV Core-core repulsion = 19623.000820 eV Total energy + Delta-G solvation = -3519.648170 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.080 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.86858 -37.44250 -36.78733 -36.38236 -35.61469 -33.89111 -31.98326 -30.62325 -29.95676 -27.77745 -25.70596 -24.33608 -23.33204 -22.58268 -20.99807 -20.31230 -19.03760 -17.56070 -17.40853 -16.33827 -15.77455 -14.92150 -14.73804 -14.61918 -14.37741 -14.29759 -13.98333 -13.70405 -13.62491 -12.94246 -12.69106 -12.39498 -12.22563 -11.83536 -11.66369 -11.43781 -11.30600 -11.22884 -11.08383 -11.03039 -10.93065 -10.86518 -10.69059 -10.51050 -10.38691 -10.07656 -9.32270 -8.78140 -8.73641 -8.47419 -8.07234 -7.64309 -7.51415 -6.03156 -4.08217 1.05036 1.32724 1.79697 2.30357 3.27274 3.34997 3.38042 3.51505 3.55084 4.39315 4.65941 4.76540 5.00051 5.21095 5.23055 5.28528 5.35478 5.60234 5.62035 5.65390 5.83009 5.88097 6.06023 6.18980 6.24059 6.38166 6.54653 6.56832 6.59765 6.66916 6.93168 6.95449 6.98038 7.06323 7.19286 7.42891 7.54660 7.60395 7.89218 7.95418 8.20485 8.51063 8.93909 9.55920 11.04293 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.015613 B = 0.003217 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.001733 B = 8702.743624 C = 9313.958326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.127 3.873 3 H 0.082 0.918 4 N -0.677 5.677 5 C 0.107 3.893 6 C 0.053 3.947 7 C -0.492 4.492 8 H 0.058 0.942 9 C 0.070 3.930 10 N -0.880 5.880 11 Si 0.886 3.114 12 H -0.281 1.281 13 H -0.287 1.287 14 H -0.273 1.273 15 C -0.179 4.179 16 C -0.192 4.192 17 C -0.087 4.087 18 C -0.030 4.030 19 C -0.105 4.105 20 Cl -0.069 7.069 21 C 0.230 3.770 22 N -0.869 5.869 23 C -0.107 4.107 24 Cl -0.072 7.072 25 C -0.053 4.053 26 H 0.064 0.936 27 H 0.054 0.946 28 H 0.057 0.943 29 H 0.343 0.657 30 H 0.049 0.951 31 H 0.040 0.960 32 H 0.259 0.741 33 H 0.060 0.940 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.140 0.860 38 H 0.401 0.599 39 H 0.402 0.598 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.095 -3.459 -19.600 20.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.016 3.984 3 H 0.100 0.900 4 N -0.308 5.308 5 C -0.021 4.021 6 C 0.052 3.948 7 C -0.530 4.530 8 H 0.076 0.924 9 C -0.132 4.132 10 N -0.517 5.517 11 Si 0.713 3.287 12 H -0.207 1.207 13 H -0.213 1.213 14 H -0.198 1.198 15 C -0.218 4.218 16 C -0.229 4.229 17 C -0.090 4.090 18 C -0.050 4.050 19 C -0.137 4.137 20 Cl -0.040 7.040 21 C 0.122 3.878 22 N -0.410 5.410 23 C -0.138 4.138 24 Cl -0.043 7.043 25 C -0.073 4.073 26 H 0.083 0.917 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.161 0.839 30 H 0.067 0.933 31 H 0.058 0.942 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.092 0.908 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.158 0.842 38 H 0.232 0.768 39 H 0.232 0.768 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 2.653 -3.284 -19.840 20.284 hybrid contribution -1.343 -0.486 0.481 1.508 sum 1.310 -3.770 -19.359 19.766 Atomic orbital electron populations 1.22497 0.96579 1.02279 1.02179 1.20336 0.92416 0.97047 0.88620 0.90025 1.60638 1.55074 1.11145 1.03897 1.21478 1.00031 0.92459 0.88115 1.18765 0.85799 0.96819 0.93439 1.20568 1.14200 0.92857 1.25405 0.92360 1.24972 0.97101 0.94773 0.96398 1.69973 1.37978 1.04934 1.38807 0.86696 0.81453 0.79817 0.80703 1.20746 1.21291 1.19792 1.22732 1.07155 0.94227 0.97664 1.22710 1.04924 0.95978 0.99285 1.19600 1.01117 0.92610 0.95664 1.20780 0.95202 0.94097 0.94922 1.20126 1.12193 0.84322 0.97035 1.98338 1.97405 1.10095 1.98158 1.16997 0.93778 0.89439 0.87566 1.42584 1.70702 1.09996 1.17761 1.20017 1.11503 0.89114 0.93185 1.98330 1.84876 1.73437 1.47684 1.20797 0.95385 1.00445 0.90691 0.91653 0.92701 0.92424 0.83882 0.93267 0.94196 0.93091 0.92178 0.90753 0.91298 0.90949 0.84225 0.76850 0.76777 0.84668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.42 9.10 37.16 0.34 -2.08 16 2 C 0.13 1.85 2.79 -68.86 -0.19 1.66 16 3 H 0.08 1.20 7.50 -51.93 -0.39 0.81 16 4 N -0.68 -12.02 5.60 -107.95 -0.61 -12.62 16 5 C 0.11 2.30 5.34 -3.83 -0.02 2.28 16 6 C 0.05 1.25 1.54 -155.66 -0.24 1.01 16 7 C -0.49 -12.89 8.82 -34.44 -0.30 -13.20 16 8 H 0.06 1.54 7.82 -52.49 -0.41 1.13 16 9 C 0.07 1.86 5.24 -17.82 -0.09 1.76 16 10 N -0.88 -24.04 12.46 55.43 0.69 -23.35 16 11 Si 0.89 20.49 29.54 -169.99 -5.02 15.47 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 13 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 14 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 15 C -0.18 -4.18 9.88 -26.73 -0.26 -4.45 16 16 C -0.19 -4.20 9.77 -26.73 -0.26 -4.46 16 17 C -0.09 -1.15 4.95 -104.59 -0.52 -1.67 16 18 C -0.03 -0.40 9.02 -39.57 -0.36 -0.76 16 19 C -0.11 -1.30 6.34 -39.32 -0.25 -1.55 16 20 Cl -0.07 -0.77 27.59 -51.86 -1.43 -2.20 16 21 C 0.23 2.66 6.75 -83.68 -0.57 2.09 16 22 N -0.87 -7.85 9.00 32.46 0.29 -7.56 16 23 C -0.11 -1.25 6.34 -39.32 -0.25 -1.50 16 24 Cl -0.07 -0.73 27.59 -51.86 -1.43 -2.16 16 25 C -0.05 -0.65 9.44 -39.57 -0.37 -1.03 16 26 H 0.06 1.01 7.66 -51.93 -0.40 0.61 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.76 8.08 -51.93 -0.42 0.34 16 29 H 0.34 6.23 8.00 -39.29 -0.31 5.91 16 30 H 0.05 1.17 6.67 -51.93 -0.35 0.82 16 31 H 0.04 0.85 7.68 -51.93 -0.40 0.45 16 32 H 0.26 6.83 8.32 -40.82 -0.34 6.49 16 33 H 0.06 1.33 8.04 -51.93 -0.42 0.91 16 34 H 0.07 1.81 8.14 -51.93 -0.42 1.39 16 35 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 36 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 37 H 0.14 1.86 7.48 -52.49 -0.39 1.47 16 38 H 0.40 3.12 7.51 -40.82 -0.31 2.81 16 39 H 0.40 3.21 7.51 -40.82 -0.31 2.90 16 40 H 0.14 1.47 7.99 -52.49 -0.42 1.05 16 LS Contribution 361.26 15.07 5.44 5.44 Total: -1.00 -26.82 361.26 -10.76 -37.58 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: -5.34 Total: 11.29 kcal Atomic # 6 Polarization: -18.54 SS G_CDS: -3.35 Total: -21.89 kcal Atomic # 7 Polarization: -43.91 SS G_CDS: 0.38 Total: -43.53 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Atomic # 17 Polarization: -1.50 SS G_CDS: -2.86 Total: -4.36 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -26.82 -10.76 -37.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797587536.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.536 kcal (2) G-P(sol) polarization free energy of solvation -26.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.580 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds