Wall clock time and date at job start Tue Mar 31 2020 16:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47306 * 2 1 4 4 N 1.46897 * 109.47387 * 120.00327 * 2 1 3 5 5 C 1.46893 * 111.00089 * 273.23831 * 4 2 1 6 6 C 1.53003 * 109.47221 * 184.64056 * 5 4 2 7 7 C 1.50697 * 115.55213 * 271.54851 * 6 5 4 8 8 H 1.07999 * 120.00161 * 115.31589 * 7 6 5 9 9 C 1.37882 * 119.99810 * 295.31289 * 7 6 5 10 10 N 1.31518 * 120.00056 * 355.18848 * 9 7 6 11 11 Si 1.86799 * 119.99920 * 175.18983 * 9 7 6 12 12 H 1.48500 * 109.47255 * 89.99997 * 11 9 7 13 13 H 1.48503 * 109.46959 * 210.00462 * 11 9 7 14 14 H 1.48501 * 109.47151 * 329.99817 * 11 9 7 15 15 C 1.53003 * 117.49585 * 125.83717 * 6 5 4 16 16 C 1.52994 * 60.00076 * 252.51064 * 15 6 5 17 17 C 1.50706 * 109.46650 * 240.00385 * 2 1 3 18 18 C 1.38279 * 119.91969 * 285.10802 * 17 2 1 19 19 C 1.38222 * 120.08331 * 179.73128 * 18 17 2 20 20 Cl 1.73599 * 120.04203 * 180.27604 * 19 18 17 21 21 C 1.38959 * 119.91552 * 0.51915 * 19 18 17 22 22 N 1.39822 * 120.08021 * 179.77464 * 21 19 18 23 23 C 1.38963 * 119.83988 * 359.75373 * 21 19 18 24 24 Cl 1.73595 * 120.04358 * 180.02562 * 23 21 19 25 25 C 1.38222 * 119.91536 * 359.97438 * 23 21 19 26 26 H 1.08999 * 109.46700 * 299.99648 * 1 2 3 27 27 H 1.08994 * 109.47374 * 59.99877 * 1 2 3 28 28 H 1.09001 * 109.46983 * 180.02562 * 1 2 3 29 29 H 1.00902 * 110.99974 * 37.19963 * 4 2 1 30 30 H 1.09003 * 109.47127 * 64.64656 * 5 4 2 31 31 H 1.08999 * 109.47016 * 304.64385 * 5 4 2 32 32 H 0.96994 * 119.99811 * 185.02631 * 10 9 7 33 33 H 1.08996 * 117.49914 * 0.02562 * 15 6 5 34 34 H 1.09006 * 117.49211 * 145.02287 * 15 6 5 35 35 H 1.09004 * 117.50512 * 252.51159 * 16 15 6 36 36 H 1.09002 * 117.51862 * 107.47997 * 16 15 6 37 37 H 1.08000 * 119.95566 * 359.97438 * 18 17 2 38 38 H 0.97003 * 120.00451 * 179.97438 * 22 21 19 39 39 H 0.96998 * 120.00330 * 359.97438 * 22 21 19 40 40 H 1.07999 * 119.96268 * 179.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6925 1.1993 5 6 2.1222 0.2321 2.3362 6 6 2.7425 -0.4953 3.5308 7 6 1.7699 -1.2088 4.4340 8 1 1.8039 -2.2846 4.5218 9 6 0.8365 -0.4880 5.1484 10 7 0.8552 0.8267 5.1158 11 14 -0.4547 -1.3787 6.1627 12 1 0.0614 -1.5995 7.5375 13 1 -1.6900 -0.5567 6.2237 14 1 -0.7622 -2.6881 5.5331 15 6 3.9767 0.1357 4.1787 16 6 4.1200 -1.1313 3.3331 17 6 2.0322 -0.7104 -1.2306 18 6 1.9676 -2.0896 -1.3055 19 6 2.4221 -2.7443 -2.4348 20 17 2.3338 -4.4754 -2.5306 21 6 2.9545 -2.0153 -3.4913 22 7 3.4197 -2.6743 -4.6334 23 6 3.0231 -0.6297 -3.4102 24 17 3.6866 0.2862 -4.7271 25 6 2.5614 0.0183 -2.2799 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.4329 -1.4813 1.4264 30 1 1.1280 0.5893 2.6047 31 1 2.7504 1.0790 2.0602 32 1 0.2463 1.3344 5.6745 33 1 4.3464 1.0690 3.7542 34 1 4.0851 0.0348 5.2587 35 1 4.3227 -2.0657 3.8565 36 1 4.5840 -1.0320 2.3518 37 1 1.5578 -2.6558 -0.4821 38 1 3.7908 -2.1644 -5.3704 39 1 3.3713 -3.6415 -4.6888 40 1 2.6147 1.0951 -2.2159 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000797587536.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:43:36 Heat of formation + Delta-G solvation = 13.254158 kcal Electronic energy + Delta-G solvation = -23143.243149 eV Core-core repulsion = 19623.000820 eV Total energy + Delta-G solvation = -3520.242329 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.080 amu Computer time = -0.34 seconds Orbital eigenvalues (eV) -40.83191 -38.92386 -37.66430 -37.60237 -36.69724 -34.98039 -33.99589 -31.56682 -31.23487 -28.78285 -27.65834 -25.90522 -24.33500 -23.65487 -22.78738 -21.46216 -20.87670 -18.53659 -18.27769 -17.93876 -17.05041 -16.61082 -16.03102 -15.88827 -15.68503 -15.30075 -15.21354 -14.99518 -14.81464 -14.38729 -14.05445 -13.57225 -13.42343 -13.25803 -12.96763 -12.89518 -12.80378 -12.69521 -12.54572 -12.26490 -12.14155 -12.09341 -11.95304 -11.91551 -11.75578 -11.46284 -11.13598 -10.71150 -10.39508 -9.91514 -9.66657 -9.04484 -8.50638 -8.04913 -6.15061 0.10631 0.37436 0.90291 1.40059 1.42590 1.45865 1.54054 2.45841 2.55100 2.74495 3.19457 3.36791 3.76795 3.85155 3.93695 4.16910 4.27817 4.32814 4.44401 4.51241 4.61800 4.72912 4.77501 4.82934 4.93263 4.94782 5.06834 5.12414 5.16901 5.20917 5.29860 5.37111 5.57266 5.62489 5.71220 5.71894 5.93482 6.25244 6.42786 6.51714 6.69039 6.74175 6.94755 7.51403 9.01640 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.015613 B = 0.003217 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.001733 B = 8702.743624 C = 9313.958326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.130 3.870 3 H 0.080 0.920 4 N -0.672 5.672 5 C 0.126 3.874 6 C 0.031 3.969 7 C -0.505 4.505 8 H 0.050 0.950 9 C 0.030 3.970 10 N -0.905 5.905 11 Si 0.942 3.058 12 H -0.282 1.282 13 H -0.286 1.286 14 H -0.267 1.267 15 C -0.187 4.187 16 C -0.168 4.168 17 C -0.097 4.097 18 C -0.037 4.037 19 C -0.115 4.115 20 Cl -0.061 7.061 21 C 0.233 3.767 22 N -0.858 5.858 23 C -0.113 4.113 24 Cl -0.057 7.057 25 C -0.052 4.052 26 H 0.042 0.958 27 H 0.074 0.926 28 H 0.060 0.940 29 H 0.339 0.661 30 H 0.020 0.980 31 H 0.038 0.962 32 H 0.258 0.742 33 H 0.069 0.931 34 H 0.056 0.944 35 H 0.068 0.932 36 H 0.087 0.913 37 H 0.134 0.866 38 H 0.409 0.591 39 H 0.408 0.592 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.291 -4.057 -21.302 21.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.020 3.980 3 H 0.099 0.901 4 N -0.302 5.302 5 C -0.004 4.004 6 C 0.031 3.969 7 C -0.543 4.543 8 H 0.068 0.932 9 C -0.170 4.170 10 N -0.543 5.543 11 Si 0.769 3.231 12 H -0.208 1.208 13 H -0.212 1.212 14 H -0.192 1.192 15 C -0.225 4.225 16 C -0.206 4.206 17 C -0.100 4.100 18 C -0.057 4.057 19 C -0.147 4.147 20 Cl -0.032 7.032 21 C 0.124 3.876 22 N -0.399 5.399 23 C -0.145 4.145 24 Cl -0.029 7.029 25 C -0.072 4.072 26 H 0.061 0.939 27 H 0.093 0.907 28 H 0.079 0.921 29 H 0.157 0.843 30 H 0.038 0.962 31 H 0.057 0.943 32 H 0.068 0.932 33 H 0.087 0.913 34 H 0.075 0.925 35 H 0.087 0.913 36 H 0.105 0.895 37 H 0.152 0.848 38 H 0.240 0.760 39 H 0.240 0.760 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 2.864 -3.903 -21.578 22.114 hybrid contribution -1.347 -0.328 0.914 1.660 sum 1.517 -4.231 -20.664 21.147 Atomic orbital electron populations 1.22405 0.95955 1.02428 1.02010 1.20321 0.92958 0.96875 0.87845 0.90134 1.60591 1.55577 1.10511 1.03550 1.21112 0.97996 0.92637 0.88606 1.18912 0.86153 0.97666 0.94194 1.20796 1.14962 0.92642 1.25922 0.93193 1.25569 0.98664 0.95349 0.97464 1.70073 1.38701 1.05993 1.39503 0.85798 0.79195 0.78955 0.79169 1.20770 1.21159 1.19185 1.22688 1.07524 0.95432 0.96875 1.22650 1.03314 0.95144 0.99444 1.19369 1.02583 0.92659 0.95429 1.20764 0.95593 0.94135 0.95206 1.20147 1.12566 0.84851 0.97109 1.98338 1.97396 1.09372 1.98139 1.17075 0.93108 0.89559 0.87896 1.42590 1.69742 1.10444 1.17162 1.20071 1.11515 0.89368 0.93569 1.98336 1.84605 1.73099 1.46815 1.20908 0.94725 1.01057 0.90469 0.93860 0.90683 0.92133 0.84251 0.96203 0.94333 0.93242 0.91267 0.92536 0.91331 0.89491 0.84838 0.75953 0.76039 0.83501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.56 9.10 71.98 0.66 -3.91 16 2 C 0.13 3.73 2.79 44.17 0.12 3.85 16 3 H 0.08 2.32 7.50 -2.39 -0.02 2.30 16 4 N -0.67 -23.72 5.60 -495.46 -2.78 -26.50 16 5 C 0.13 5.42 5.34 86.31 0.46 5.88 16 6 C 0.03 1.50 1.54 -52.93 -0.08 1.42 16 7 C -0.51 -26.68 8.82 25.60 0.23 -26.45 16 8 H 0.05 2.66 7.82 -2.91 -0.02 2.63 16 9 C 0.03 1.59 5.24 84.66 0.44 2.03 16 10 N -0.90 -50.09 12.46 21.45 0.27 -49.83 16 11 Si 0.94 42.28 29.54 68.60 2.03 44.30 16 12 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 13 H -0.29 -12.68 7.11 99.48 0.71 -11.98 16 14 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 15 C -0.19 -8.72 9.88 30.59 0.30 -8.42 16 16 C -0.17 -7.24 9.77 30.59 0.30 -6.94 16 17 C -0.10 -2.47 4.95 -19.84 -0.10 -2.57 16 18 C -0.04 -0.95 9.02 22.28 0.20 -0.75 16 19 C -0.11 -2.67 6.34 22.44 0.14 -2.52 16 20 Cl -0.06 -1.28 27.59 -2.72 -0.08 -1.35 16 21 C 0.23 4.91 6.75 38.21 0.26 5.17 16 22 N -0.86 -13.54 9.00 -51.22 -0.46 -14.00 16 23 C -0.11 -2.43 6.34 22.44 0.14 -2.28 16 24 Cl -0.06 -1.03 27.59 -2.72 -0.08 -1.11 16 25 C -0.05 -1.18 9.44 22.28 0.21 -0.97 16 26 H 0.04 1.35 7.66 -2.39 -0.02 1.33 16 27 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 28 H 0.06 1.58 8.08 -2.39 -0.02 1.56 16 29 H 0.34 12.38 8.00 -89.69 -0.72 11.66 16 30 H 0.02 0.97 6.67 -2.39 -0.02 0.95 16 31 H 0.04 1.65 7.68 -2.39 -0.02 1.63 16 32 H 0.26 13.78 8.32 -92.71 -0.77 13.01 16 33 H 0.07 3.05 8.04 -2.39 -0.02 3.03 16 34 H 0.06 2.80 8.14 -2.38 -0.02 2.78 16 35 H 0.07 2.94 8.14 -2.38 -0.02 2.92 16 36 H 0.09 3.48 8.14 -2.39 -0.02 3.46 16 37 H 0.13 3.49 7.48 -2.91 -0.02 3.47 16 38 H 0.41 5.34 7.51 -92.71 -0.70 4.64 16 39 H 0.41 5.60 7.51 -92.71 -0.70 4.90 16 40 H 0.15 2.91 7.99 -2.91 -0.02 2.88 16 Total: -1.00 -56.06 361.26 1.18 -54.89 By element: Atomic # 1 Polarization: 31.06 SS G_CDS: -1.01 Total: 30.05 kcal Atomic # 6 Polarization: -39.73 SS G_CDS: 3.28 Total: -36.45 kcal Atomic # 7 Polarization: -87.36 SS G_CDS: -2.97 Total: -90.33 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.30 kcal Atomic # 17 Polarization: -2.31 SS G_CDS: -0.15 Total: -2.46 kcal Total: -56.06 1.18 -54.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797587536.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.143 kcal (2) G-P(sol) polarization free energy of solvation -56.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.889 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.34 seconds