Wall clock time and date at job start Tue Mar 31 2020 16:43:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.47044 * 2 1 4 4 N 1.46906 * 109.47297 * 240.00087 * 2 1 3 5 5 C 1.46900 * 110.99897 * 87.47553 * 4 2 1 6 6 C 1.53002 * 109.47095 * 184.31578 * 5 4 2 7 7 C 1.50695 * 115.55121 * 276.40752 * 6 5 4 8 8 H 1.07998 * 120.00349 * 114.46230 * 7 6 5 9 9 C 1.37885 * 119.99447 * 294.46608 * 7 6 5 10 10 N 1.31509 * 120.00004 * 353.21673 * 9 7 6 11 11 Si 1.86802 * 119.99594 * 173.22195 * 9 7 6 12 12 H 1.48503 * 109.47053 * 89.99993 * 11 9 7 13 13 H 1.48500 * 109.46990 * 209.99683 * 11 9 7 14 14 H 1.48495 * 109.47135 * 329.99827 * 11 9 7 15 15 C 1.52997 * 117.50024 * 130.69152 * 6 5 4 16 16 C 1.53001 * 60.00358 * 252.51747 * 15 6 5 17 17 C 1.50700 * 109.46987 * 119.99830 * 2 1 3 18 18 C 1.38275 * 119.91741 * 74.37872 * 17 2 1 19 19 C 1.38227 * 120.08098 * 179.72342 * 18 17 2 20 20 Cl 1.73598 * 120.04209 * 180.27822 * 19 18 17 21 21 C 1.38956 * 119.91241 * 0.56857 * 19 18 17 22 22 N 1.39831 * 120.07456 * 179.72588 * 21 19 18 23 23 C 1.38949 * 119.84314 * 359.70546 * 21 19 18 24 24 Cl 1.73597 * 120.04243 * 180.02562 * 23 21 19 25 25 C 1.38219 * 119.91871 * 359.97438 * 23 21 19 26 26 H 1.08994 * 109.47088 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46943 * 300.00194 * 1 2 3 28 28 H 1.09008 * 109.46982 * 60.00070 * 1 2 3 29 29 H 1.00904 * 110.99618 * 323.52464 * 4 2 1 30 30 H 1.09006 * 109.47255 * 304.31508 * 5 4 2 31 31 H 1.08995 * 109.46993 * 64.31425 * 5 4 2 32 32 H 0.97005 * 119.99681 * 185.01102 * 10 9 7 33 33 H 1.09001 * 117.49753 * 0.02562 * 15 6 5 34 34 H 1.09000 * 117.50182 * 145.01786 * 15 6 5 35 35 H 1.08997 * 117.49172 * 252.51581 * 16 15 6 36 36 H 1.08989 * 117.51962 * 107.48498 * 16 15 6 37 37 H 1.08004 * 119.95688 * 359.97438 * 18 17 2 38 38 H 0.97008 * 119.99799 * 179.97438 * 22 21 19 39 39 H 0.96994 * 120.00666 * 359.97438 * 22 21 19 40 40 H 1.08001 * 119.96642 * 179.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1995 5 6 2.1383 0.2358 -2.3318 6 6 2.5463 -0.5393 -3.5862 7 6 4.0230 -0.7977 -3.7390 8 1 4.4010 -1.8087 -3.7017 9 6 4.8915 0.2567 -3.9264 10 7 4.4216 1.4718 -4.1053 11 14 6.7357 -0.0411 -3.9264 12 1 7.1893 -0.3370 -5.3091 13 1 7.4327 1.1706 -3.4254 14 1 7.0509 -1.1936 -3.0447 15 6 1.7353 -0.2978 -4.8609 16 6 1.5844 -1.6144 -4.0963 17 6 2.0323 -0.7104 1.2305 18 6 1.9579 -2.0889 1.3097 19 6 2.4229 -2.7443 2.4343 20 17 2.3356 -4.4755 2.5296 21 6 2.9547 -2.0153 3.4910 22 7 3.4207 -2.6745 4.6327 23 6 3.0226 -0.6298 3.4102 24 17 3.6866 0.2860 4.7270 25 6 2.5618 0.0183 2.2797 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 1.4261 -1.4742 -1.4334 30 1 1.1792 0.7248 -2.5027 31 1 2.8946 0.9879 -2.1073 32 1 5.0279 2.2011 -4.3094 33 1 0.9113 0.4137 -4.8059 34 1 2.2698 -0.3254 -5.8104 35 1 2.0199 -2.5083 -4.5428 36 1 0.6613 -1.7696 -3.5380 37 1 1.5397 -2.6544 0.4900 38 1 3.7921 -2.1645 5.3696 39 1 3.3727 -3.6417 4.6880 40 1 2.6138 1.0951 2.2163 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797587537.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:43:45 Heat of formation + Delta-G solvation = 29.180262 kcal Electronic energy + Delta-G solvation = -23210.082632 eV Core-core repulsion = 19690.530911 eV Total energy + Delta-G solvation = -3519.551721 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.080 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.83815 -37.54300 -36.74747 -36.39708 -35.60325 -33.87500 -31.91227 -30.58434 -29.98393 -27.81057 -25.69480 -24.36238 -23.31717 -22.59206 -21.16012 -20.29258 -19.00044 -17.54523 -17.37213 -16.44305 -15.79923 -14.88462 -14.76099 -14.51917 -14.34594 -14.26088 -14.10182 -13.71558 -13.32963 -13.19210 -12.80145 -12.36147 -12.31139 -11.86062 -11.66001 -11.53248 -11.26805 -11.20455 -11.05950 -11.00526 -10.88258 -10.73434 -10.64121 -10.46369 -10.41311 -10.18750 -9.31993 -8.89459 -8.69275 -8.47351 -8.06917 -7.62180 -7.51915 -5.95364 -3.97068 1.09534 1.36822 1.83731 2.34188 3.35218 3.42569 3.48388 3.54666 3.59879 4.48389 4.65644 4.80604 4.96542 5.21761 5.27903 5.30401 5.36374 5.50664 5.55380 5.59902 5.77358 5.90700 6.01214 6.10926 6.16045 6.23865 6.39857 6.55122 6.56433 6.63352 6.67705 6.73601 6.94737 7.10174 7.10572 7.42872 7.47128 7.66865 7.92316 8.00411 8.15473 8.54377 9.00430 9.65372 11.13232 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.011500 B = 0.003683 C = 0.003475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2434.260443 B = 7599.791352 C = 8054.779705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.126 3.874 3 H 0.085 0.915 4 N -0.668 5.668 5 C 0.108 3.892 6 C 0.059 3.941 7 C -0.475 4.475 8 H 0.058 0.942 9 C 0.070 3.930 10 N -0.885 5.885 11 Si 0.887 3.113 12 H -0.283 1.283 13 H -0.287 1.287 14 H -0.273 1.273 15 C -0.177 4.177 16 C -0.211 4.211 17 C -0.086 4.086 18 C -0.030 4.030 19 C -0.105 4.105 20 Cl -0.069 7.069 21 C 0.230 3.770 22 N -0.869 5.869 23 C -0.106 4.106 24 Cl -0.071 7.071 25 C -0.052 4.052 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.331 0.669 30 H -0.001 1.001 31 H 0.087 0.913 32 H 0.258 0.742 33 H 0.060 0.940 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.061 0.939 37 H 0.138 0.862 38 H 0.402 0.598 39 H 0.402 0.598 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.728 -4.988 17.020 18.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.015 3.985 3 H 0.104 0.896 4 N -0.297 5.297 5 C -0.020 4.020 6 C 0.058 3.942 7 C -0.513 4.513 8 H 0.076 0.924 9 C -0.132 4.132 10 N -0.523 5.523 11 Si 0.715 3.285 12 H -0.210 1.210 13 H -0.213 1.213 14 H -0.197 1.197 15 C -0.215 4.215 16 C -0.248 4.248 17 C -0.090 4.090 18 C -0.050 4.050 19 C -0.136 4.136 20 Cl -0.041 7.041 21 C 0.122 3.878 22 N -0.410 5.410 23 C -0.137 4.137 24 Cl -0.043 7.043 25 C -0.071 4.071 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.149 0.851 30 H 0.017 0.983 31 H 0.105 0.895 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.097 0.903 35 H 0.094 0.906 36 H 0.080 0.920 37 H 0.156 0.844 38 H 0.232 0.768 39 H 0.232 0.768 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -5.936 -4.781 17.331 18.933 hybrid contribution 0.316 -0.197 0.083 0.382 sum -5.620 -4.979 17.414 18.964 Atomic orbital electron populations 1.22510 0.96910 1.02044 1.02063 1.20349 0.91954 0.97476 0.88705 0.89643 1.60527 1.54257 1.10953 1.04010 1.21580 0.97116 0.94108 0.89154 1.18838 0.92079 0.93910 0.89331 1.20396 0.89100 0.92782 1.49017 0.92394 1.24907 0.98295 0.95056 0.94940 1.69960 1.34611 0.99958 1.47758 0.86667 0.85959 0.77800 0.78067 1.20968 1.21303 1.19748 1.22750 1.02619 0.97084 0.99043 1.22828 1.01264 0.93673 1.07065 1.19542 1.01295 0.92618 0.95494 1.20726 0.95401 0.94032 0.94807 1.20100 1.12165 0.84224 0.97155 1.98334 1.97419 1.10166 1.98165 1.16992 0.93768 0.89439 0.87553 1.42580 1.70690 1.09970 1.17791 1.20009 1.11364 0.89118 0.93223 1.98330 1.84866 1.73440 1.47650 1.20805 0.95193 1.00526 0.90601 0.92508 0.92380 0.92199 0.85106 0.98305 0.89495 0.93185 0.92142 0.90317 0.90577 0.92047 0.84429 0.76845 0.76795 0.84591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.19 9.09 37.16 0.34 -1.85 16 2 C 0.13 1.86 2.79 -68.86 -0.19 1.67 16 3 H 0.09 1.32 7.62 -51.93 -0.40 0.93 16 4 N -0.67 -12.08 5.84 -107.94 -0.63 -12.71 16 5 C 0.11 2.34 5.33 -3.82 -0.02 2.32 16 6 C 0.06 1.40 1.50 -155.66 -0.23 1.17 16 7 C -0.48 -12.80 8.83 -34.44 -0.30 -13.11 16 8 H 0.06 1.59 7.82 -52.49 -0.41 1.18 16 9 C 0.07 1.91 5.25 -17.82 -0.09 1.81 16 10 N -0.89 -24.72 12.55 55.43 0.70 -24.02 16 11 Si 0.89 21.40 29.55 -169.99 -5.02 16.37 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 13 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 14 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 15 C -0.18 -4.02 9.88 -26.73 -0.26 -4.28 16 16 C -0.21 -4.39 9.39 -26.73 -0.25 -4.64 16 17 C -0.09 -1.20 4.95 -104.59 -0.52 -1.72 16 18 C -0.03 -0.41 9.00 -39.57 -0.36 -0.77 16 19 C -0.10 -1.36 6.34 -39.32 -0.25 -1.60 16 20 Cl -0.07 -0.80 27.59 -51.86 -1.43 -2.23 16 21 C 0.23 2.82 6.75 -83.68 -0.57 2.26 16 22 N -0.87 -8.40 9.00 32.46 0.29 -8.11 16 23 C -0.11 -1.33 6.34 -39.32 -0.25 -1.58 16 24 Cl -0.07 -0.79 27.59 -51.86 -1.43 -2.22 16 25 C -0.05 -0.68 9.44 -39.57 -0.37 -1.05 16 26 H 0.06 0.66 8.07 -51.93 -0.42 0.24 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.78 7.56 -51.92 -0.39 0.39 16 29 H 0.33 5.62 7.06 -39.29 -0.28 5.34 16 30 H 0.00 -0.02 7.30 -51.93 -0.38 -0.40 16 31 H 0.09 2.16 7.23 -51.93 -0.38 1.78 16 32 H 0.26 6.96 8.32 -40.82 -0.34 6.62 16 33 H 0.06 1.30 8.06 -51.93 -0.42 0.88 16 34 H 0.08 1.89 8.14 -51.93 -0.42 1.47 16 35 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 36 H 0.06 1.13 7.81 -51.94 -0.41 0.72 16 37 H 0.14 1.83 7.52 -52.48 -0.39 1.43 16 38 H 0.40 3.38 7.51 -40.82 -0.31 3.07 16 39 H 0.40 3.42 7.51 -40.82 -0.31 3.12 16 40 H 0.14 1.61 7.99 -52.49 -0.42 1.19 16 LS Contribution 360.13 15.07 5.43 5.43 Total: -1.00 -27.89 360.13 -10.74 -38.63 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: -5.30 Total: 10.24 kcal Atomic # 6 Polarization: -18.04 SS G_CDS: -3.33 Total: -21.38 kcal Atomic # 7 Polarization: -45.20 SS G_CDS: 0.36 Total: -44.85 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 17 Polarization: -1.59 SS G_CDS: -2.86 Total: -4.45 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -27.89 -10.74 -38.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797587537.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.806 kcal (2) G-P(sol) polarization free energy of solvation -27.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.625 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds