Wall clock time and date at job start Tue Mar 31 2020 16:43:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.47044 * 2 1 4 4 N 1.46906 * 109.47297 * 240.00087 * 2 1 3 5 5 C 1.46900 * 110.99897 * 87.47553 * 4 2 1 6 6 C 1.53002 * 109.47095 * 184.31578 * 5 4 2 7 7 C 1.50695 * 115.55121 * 276.40752 * 6 5 4 8 8 H 1.07998 * 120.00349 * 114.46230 * 7 6 5 9 9 C 1.37885 * 119.99447 * 294.46608 * 7 6 5 10 10 N 1.31509 * 120.00004 * 353.21673 * 9 7 6 11 11 Si 1.86802 * 119.99594 * 173.22195 * 9 7 6 12 12 H 1.48503 * 109.47053 * 89.99993 * 11 9 7 13 13 H 1.48500 * 109.46990 * 209.99683 * 11 9 7 14 14 H 1.48495 * 109.47135 * 329.99827 * 11 9 7 15 15 C 1.52997 * 117.50024 * 130.69152 * 6 5 4 16 16 C 1.53001 * 60.00358 * 252.51747 * 15 6 5 17 17 C 1.50700 * 109.46987 * 119.99830 * 2 1 3 18 18 C 1.38275 * 119.91741 * 74.37872 * 17 2 1 19 19 C 1.38227 * 120.08098 * 179.72342 * 18 17 2 20 20 Cl 1.73598 * 120.04209 * 180.27822 * 19 18 17 21 21 C 1.38956 * 119.91241 * 0.56857 * 19 18 17 22 22 N 1.39831 * 120.07456 * 179.72588 * 21 19 18 23 23 C 1.38949 * 119.84314 * 359.70546 * 21 19 18 24 24 Cl 1.73597 * 120.04243 * 180.02562 * 23 21 19 25 25 C 1.38219 * 119.91871 * 359.97438 * 23 21 19 26 26 H 1.08994 * 109.47088 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46943 * 300.00194 * 1 2 3 28 28 H 1.09008 * 109.46982 * 60.00070 * 1 2 3 29 29 H 1.00904 * 110.99618 * 323.52464 * 4 2 1 30 30 H 1.09006 * 109.47255 * 304.31508 * 5 4 2 31 31 H 1.08995 * 109.46993 * 64.31425 * 5 4 2 32 32 H 0.97005 * 119.99681 * 185.01102 * 10 9 7 33 33 H 1.09001 * 117.49753 * 0.02562 * 15 6 5 34 34 H 1.09000 * 117.50182 * 145.01786 * 15 6 5 35 35 H 1.08997 * 117.49172 * 252.51581 * 16 15 6 36 36 H 1.08989 * 117.51962 * 107.48498 * 16 15 6 37 37 H 1.08004 * 119.95688 * 359.97438 * 18 17 2 38 38 H 0.97008 * 119.99799 * 179.97438 * 22 21 19 39 39 H 0.96994 * 120.00666 * 359.97438 * 22 21 19 40 40 H 1.08001 * 119.96642 * 179.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1995 5 6 2.1383 0.2358 -2.3318 6 6 2.5463 -0.5393 -3.5862 7 6 4.0230 -0.7977 -3.7390 8 1 4.4010 -1.8087 -3.7017 9 6 4.8915 0.2567 -3.9264 10 7 4.4216 1.4718 -4.1053 11 14 6.7357 -0.0411 -3.9264 12 1 7.1893 -0.3370 -5.3091 13 1 7.4327 1.1706 -3.4254 14 1 7.0509 -1.1936 -3.0447 15 6 1.7353 -0.2978 -4.8609 16 6 1.5844 -1.6144 -4.0963 17 6 2.0323 -0.7104 1.2305 18 6 1.9579 -2.0889 1.3097 19 6 2.4229 -2.7443 2.4343 20 17 2.3356 -4.4755 2.5296 21 6 2.9547 -2.0153 3.4910 22 7 3.4207 -2.6745 4.6327 23 6 3.0226 -0.6298 3.4102 24 17 3.6866 0.2860 4.7270 25 6 2.5618 0.0183 2.2797 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 1.4261 -1.4742 -1.4334 30 1 1.1792 0.7248 -2.5027 31 1 2.8946 0.9879 -2.1073 32 1 5.0279 2.2011 -4.3094 33 1 0.9113 0.4137 -4.8059 34 1 2.2698 -0.3254 -5.8104 35 1 2.0199 -2.5083 -4.5428 36 1 0.6613 -1.7696 -3.5380 37 1 1.5397 -2.6544 0.4900 38 1 3.7921 -2.1645 5.3696 39 1 3.3727 -3.6417 4.6880 40 1 2.6138 1.0951 2.2163 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000797587537.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:43:44 Heat of formation + Delta-G solvation = 14.227625 kcal Electronic energy + Delta-G solvation = -23210.731027 eV Core-core repulsion = 19690.530911 eV Total energy + Delta-G solvation = -3520.200116 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.080 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.84190 -39.03066 -37.67708 -37.60873 -36.70118 -34.98951 -33.95560 -31.57287 -31.24800 -28.79498 -27.64856 -25.93295 -24.35540 -23.70298 -22.85251 -21.45540 -20.84324 -18.60019 -18.29083 -18.02737 -17.05515 -16.58149 -16.17194 -15.91530 -15.47241 -15.30756 -15.26380 -14.87469 -14.80437 -14.66431 -14.05729 -13.57710 -13.45812 -13.26813 -13.06919 -12.84717 -12.78326 -12.62245 -12.45405 -12.32184 -12.15397 -12.11186 -11.98788 -11.94013 -11.77308 -11.47620 -11.11310 -10.82693 -10.39145 -9.92287 -9.67301 -8.99856 -8.51218 -8.02428 -6.08294 0.09845 0.36957 0.88946 1.38682 1.41761 1.45505 1.54395 2.48201 2.54241 2.73849 3.22638 3.36281 3.71926 3.83167 3.88355 4.18335 4.27057 4.32437 4.42130 4.50610 4.61542 4.63552 4.73774 4.78793 4.86456 4.92508 4.99750 5.02708 5.13982 5.18555 5.29194 5.33432 5.55469 5.62259 5.66302 5.75781 6.00585 6.24234 6.42756 6.51896 6.73408 6.81344 6.93989 7.55937 9.05282 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.011500 B = 0.003683 C = 0.003475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2434.260443 B = 7599.791352 C = 8054.779705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.128 3.872 3 H 0.073 0.927 4 N -0.675 5.675 5 C 0.128 3.872 6 C 0.030 3.970 7 C -0.488 4.488 8 H 0.045 0.955 9 C 0.029 3.971 10 N -0.908 5.908 11 Si 0.938 3.062 12 H -0.279 1.279 13 H -0.286 1.286 14 H -0.274 1.274 15 C -0.184 4.184 16 C -0.182 4.182 17 C -0.099 4.099 18 C -0.036 4.036 19 C -0.115 4.115 20 Cl -0.059 7.059 21 C 0.231 3.769 22 N -0.858 5.858 23 C -0.114 4.114 24 Cl -0.059 7.059 25 C -0.056 4.056 26 H 0.066 0.934 27 H 0.073 0.927 28 H 0.053 0.947 29 H 0.338 0.662 30 H 0.006 0.994 31 H 0.048 0.952 32 H 0.257 0.743 33 H 0.072 0.928 34 H 0.057 0.943 35 H 0.074 0.926 36 H 0.093 0.907 37 H 0.139 0.861 38 H 0.409 0.591 39 H 0.409 0.591 40 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.271 -5.899 18.414 20.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.018 3.982 3 H 0.091 0.909 4 N -0.306 5.306 5 C -0.001 4.001 6 C 0.029 3.971 7 C -0.526 4.526 8 H 0.063 0.937 9 C -0.171 4.171 10 N -0.547 5.547 11 Si 0.765 3.235 12 H -0.204 1.204 13 H -0.212 1.212 14 H -0.199 1.199 15 C -0.222 4.222 16 C -0.219 4.219 17 C -0.102 4.102 18 C -0.056 4.056 19 C -0.147 4.147 20 Cl -0.030 7.030 21 C 0.122 3.878 22 N -0.399 5.399 23 C -0.146 4.146 24 Cl -0.030 7.030 25 C -0.076 4.076 26 H 0.085 0.915 27 H 0.092 0.908 28 H 0.072 0.928 29 H 0.158 0.842 30 H 0.024 0.976 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.091 0.909 34 H 0.076 0.924 35 H 0.092 0.908 36 H 0.111 0.889 37 H 0.157 0.843 38 H 0.240 0.760 39 H 0.240 0.760 40 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -6.478 -5.716 18.750 20.645 hybrid contribution 0.500 0.034 -0.275 0.572 sum -5.979 -5.682 18.474 20.232 Atomic orbital electron populations 1.22405 0.94813 1.02864 1.02521 1.20327 0.93618 0.96558 0.87657 0.90904 1.60386 1.55528 1.10891 1.03826 1.21135 0.96048 0.93513 0.89415 1.18931 0.91165 0.96403 0.90557 1.20653 0.91248 0.92138 1.48602 0.93699 1.25483 1.01561 0.95021 0.95032 1.70048 1.35507 1.00409 1.48737 0.85858 0.82120 0.77431 0.78050 1.20450 1.21173 1.19900 1.22684 1.02739 0.99024 0.97769 1.22830 1.01358 0.92408 1.05296 1.19439 1.02527 0.92880 0.95401 1.20768 0.95667 0.93950 0.95180 1.20160 1.12390 0.84910 0.97215 1.98334 1.97390 1.09170 1.98143 1.17081 0.93237 0.89499 0.88008 1.42577 1.69777 1.10419 1.17172 1.20074 1.11475 0.89464 0.93559 1.98332 1.84634 1.73177 1.46862 1.20923 0.94970 1.00998 0.90699 0.91479 0.90775 0.92821 0.84244 0.97553 0.93336 0.93355 0.90939 0.92438 0.90755 0.88903 0.84347 0.76002 0.76006 0.83895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.86 9.09 71.98 0.65 -3.21 16 2 C 0.13 3.71 2.79 44.17 0.12 3.83 16 3 H 0.07 2.27 7.62 -2.39 -0.02 2.25 16 4 N -0.68 -24.03 5.84 -495.42 -2.89 -26.92 16 5 C 0.13 5.51 5.33 86.30 0.46 5.97 16 6 C 0.03 1.43 1.50 -52.93 -0.08 1.35 16 7 C -0.49 -26.58 8.83 25.60 0.23 -26.35 16 8 H 0.04 2.49 7.82 -2.91 -0.02 2.47 16 9 C 0.03 1.57 5.25 84.66 0.44 2.01 16 10 N -0.91 -51.56 12.55 21.45 0.27 -51.29 16 11 Si 0.94 44.32 29.55 68.60 2.03 46.35 16 12 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 13 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 14 H -0.27 -12.88 7.11 99.48 0.71 -12.18 16 15 C -0.18 -8.29 9.88 30.59 0.30 -7.99 16 16 C -0.18 -7.28 9.39 30.60 0.29 -7.00 16 17 C -0.10 -2.68 4.95 -19.85 -0.10 -2.78 16 18 C -0.04 -0.94 9.00 22.28 0.20 -0.74 16 19 C -0.11 -2.80 6.34 22.44 0.14 -2.66 16 20 Cl -0.06 -1.26 27.59 -2.72 -0.08 -1.34 16 21 C 0.23 5.29 6.75 38.21 0.26 5.54 16 22 N -0.86 -14.89 9.00 -51.22 -0.46 -15.35 16 23 C -0.11 -2.70 6.34 22.44 0.14 -2.56 16 24 Cl -0.06 -1.20 27.59 -2.72 -0.08 -1.27 16 25 C -0.06 -1.42 9.44 22.28 0.21 -1.21 16 26 H 0.07 1.41 8.07 -2.39 -0.02 1.39 16 27 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.05 1.30 7.56 -2.38 -0.02 1.29 16 29 H 0.34 10.99 7.06 -89.69 -0.63 10.36 16 30 H 0.01 0.26 7.30 -2.38 -0.02 0.25 16 31 H 0.05 2.46 7.23 -2.39 -0.02 2.45 16 32 H 0.26 14.08 8.32 -92.70 -0.77 13.31 16 33 H 0.07 3.05 8.06 -2.39 -0.02 3.03 16 34 H 0.06 2.79 8.14 -2.39 -0.02 2.77 16 35 H 0.07 3.00 8.14 -2.39 -0.02 2.98 16 36 H 0.09 3.13 7.81 -2.39 -0.02 3.11 16 37 H 0.14 3.50 7.52 -2.91 -0.02 3.48 16 38 H 0.41 6.03 7.51 -92.70 -0.70 5.33 16 39 H 0.41 6.12 7.51 -92.71 -0.70 5.42 16 40 H 0.14 3.29 7.99 -2.91 -0.02 3.27 16 Total: -1.00 -59.11 360.13 1.14 -57.98 By element: Atomic # 1 Polarization: 28.58 SS G_CDS: -0.93 Total: 27.65 kcal Atomic # 6 Polarization: -39.06 SS G_CDS: 3.27 Total: -35.79 kcal Atomic # 7 Polarization: -90.49 SS G_CDS: -3.08 Total: -93.57 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Atomic # 17 Polarization: -2.46 SS G_CDS: -0.15 Total: -2.61 kcal Total: -59.11 1.14 -57.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797587537.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.206 kcal (2) G-P(sol) polarization free energy of solvation -59.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds