Wall clock time and date at job start Tue Mar 31 2020 15:01:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 120.00215 * 2 1 4 4 H 1.48503 * 109.46801 * 240.00042 * 3 2 1 5 5 H 1.48501 * 109.47113 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47197 * 120.00052 * 3 2 1 7 7 C 1.37881 * 119.99961 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00427 * 175.54365 * 7 2 1 9 9 C 1.50702 * 119.99863 * 355.81837 * 7 2 1 10 10 C 1.53005 * 115.54830 * 35.31630 * 9 7 2 11 11 N 1.46504 * 109.47104 * 54.18301 * 10 9 7 12 12 C 1.34773 * 119.99845 * 184.99493 * 11 10 9 13 13 O 1.21603 * 120.00270 * 5.06953 * 12 11 10 14 14 C 1.47389 * 119.99688 * 185.07054 * 12 11 10 15 15 C 1.39973 * 120.61496 * 5.12557 * 14 12 11 16 16 C 1.38332 * 118.37563 * 179.76029 * 15 14 12 17 17 C 1.38408 * 119.51913 * 0.54014 * 16 15 14 18 18 N 1.31818 * 121.23075 * 359.70461 * 17 16 15 19 19 C 1.32502 * 121.76786 * 0.02562 * 18 17 16 20 20 S 1.76200 * 119.83804 * 180.02562 * 19 18 17 21 21 C 1.81008 * 99.99558 * 359.97438 * 20 19 18 22 22 F 1.39895 * 109.47102 * 300.00008 * 21 20 19 23 23 F 1.39897 * 109.46982 * 60.00275 * 21 20 19 24 24 C 1.52996 * 117.49965 * 249.65002 * 9 7 2 25 25 C 1.52994 * 117.49931 * 180.98471 * 9 7 2 26 26 H 0.96998 * 119.99822 * 4.99671 * 1 2 3 27 27 H 1.08997 * 109.47081 * 174.17752 * 10 9 7 28 28 H 1.08998 * 109.46943 * 294.18002 * 10 9 7 29 29 H 0.96996 * 119.99687 * 4.99039 * 11 10 9 30 30 H 1.08005 * 120.81351 * 0.02562 * 15 14 12 31 31 H 1.08000 * 120.24089 * 180.24377 * 16 15 14 32 32 H 1.08002 * 119.38664 * 179.71992 * 17 16 15 33 33 H 1.09007 * 109.46829 * 179.97438 * 21 20 19 34 34 H 1.08998 * 117.49870 * 359.97438 * 24 9 7 35 35 H 1.08994 * 117.50177 * 145.02346 * 24 9 7 36 36 H 1.09001 * 117.50246 * 214.97987 * 25 9 7 37 37 H 1.08999 * 117.50019 * 359.97438 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0821 -1.1956 -0.0721 9 6 1.2540 -2.4974 0.0963 10 6 -0.0992 -2.5335 -0.6169 11 7 0.0756 -2.1373 -2.0164 12 6 -0.9998 -1.9983 -2.8168 13 8 -2.1194 -2.1112 -2.3559 14 6 -0.8188 -1.7095 -4.2507 15 6 0.4613 -1.6825 -4.8164 16 6 0.5772 -1.4115 -6.1679 17 6 -0.5622 -1.1658 -6.9144 18 7 -1.7591 -1.1906 -6.3628 19 6 -1.9283 -1.4499 -5.0744 20 16 -3.5519 -1.4707 -4.3902 21 6 -4.5211 -1.0835 -5.8690 22 9 -4.1308 0.1634 -6.3691 23 9 -4.3012 -2.0654 -6.8410 24 6 1.3907 -3.2977 1.3931 25 6 2.0771 -3.7869 0.1153 26 1 -0.4850 0.8368 -0.0732 27 1 -0.5059 -3.5438 -0.5734 28 1 -0.7865 -1.8438 -0.1271 29 1 0.9653 -1.9750 -2.3669 30 1 1.3368 -1.8728 -4.2132 31 1 1.5500 -1.3871 -6.6363 32 1 -0.4688 -0.9500 -7.9685 33 1 -5.5803 -1.0573 -5.6127 34 1 2.0238 -2.8818 2.1768 35 1 0.5168 -3.8503 1.7379 36 1 1.6546 -4.6612 -0.3799 37 1 3.1615 -3.6926 0.0581 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797685591.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:01:59 Heat of formation + Delta-G solvation = -57.894066 kcal Electronic energy + Delta-G solvation = -25664.574249 eV Core-core repulsion = 21591.493728 eV Total energy + Delta-G solvation = -4073.080521 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.080 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -48.81335 -46.91472 -40.28951 -38.50623 -36.73761 -33.54254 -32.46484 -32.14813 -31.36938 -26.80052 -26.41875 -25.54000 -24.01809 -23.58160 -21.34509 -20.05589 -19.42124 -18.73025 -17.73527 -17.35933 -17.16505 -16.83653 -16.32816 -15.98012 -14.99461 -14.84671 -14.74200 -14.65727 -14.07818 -13.88996 -13.62406 -13.46532 -13.24458 -13.13776 -12.99721 -12.68084 -12.32573 -11.85062 -11.62152 -11.53847 -11.11966 -10.82864 -10.61644 -10.58861 -10.32701 -10.24795 -9.78832 -9.70044 -9.66009 -9.14013 -8.94688 -8.91386 -8.37831 -8.11697 -7.69134 -6.06446 -4.27202 0.66702 1.08533 1.14513 1.72045 3.17350 3.22971 3.26548 3.27150 3.79976 3.95251 3.99506 4.23714 4.42566 4.67171 4.68493 4.72506 4.84742 4.91230 5.07406 5.21950 5.39852 5.57818 5.85386 5.93555 6.01751 6.21896 6.41280 6.45119 6.52998 6.61547 6.81597 6.99270 7.18084 7.41817 7.52998 7.61691 7.88869 8.21901 8.35642 8.73642 8.91890 9.36938 10.82628 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.015330 B = 0.003986 C = 0.003847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.097184 B = 7022.829014 C = 7276.932067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.075 3.925 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.501 4.501 8 H 0.061 0.939 9 C 0.035 3.965 10 C 0.163 3.837 11 N -0.666 5.666 12 C 0.546 3.454 13 O -0.528 6.528 14 C -0.152 4.152 15 C -0.028 4.028 16 C -0.181 4.181 17 C 0.132 3.868 18 N -0.481 5.481 19 C 0.142 3.858 20 S 0.068 5.932 21 C 0.221 3.779 22 F -0.186 7.186 23 F -0.186 7.186 24 C -0.197 4.197 25 C -0.213 4.213 26 H 0.265 0.735 27 H 0.022 0.978 28 H 0.122 0.878 29 H 0.397 0.603 30 H 0.148 0.852 31 H 0.143 0.857 32 H 0.162 0.838 33 H 0.135 0.865 34 H 0.080 0.920 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.928 -2.811 -12.129 12.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.130 4.130 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.538 4.538 8 H 0.079 0.921 9 C 0.034 3.966 10 C 0.040 3.960 11 N -0.311 5.311 12 C 0.330 3.670 13 O -0.409 6.409 14 C -0.165 4.165 15 C -0.056 4.056 16 C -0.204 4.204 17 C -0.030 4.030 18 N -0.192 5.192 19 C -0.107 4.107 20 S 0.305 5.695 21 C 0.059 3.941 22 F -0.167 7.167 23 F -0.168 7.168 24 C -0.236 4.236 25 C -0.250 4.250 26 H 0.076 0.924 27 H 0.040 0.960 28 H 0.139 0.861 29 H 0.233 0.767 30 H 0.166 0.834 31 H 0.161 0.839 32 H 0.179 0.821 33 H 0.152 0.848 34 H 0.098 0.902 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.164 -2.792 -11.117 12.572 hybrid contribution 2.380 1.089 -1.021 2.809 sum -2.783 -1.703 -12.138 12.569 Atomic orbital electron populations 1.69816 1.05640 1.27037 1.47539 1.25000 0.94863 0.99076 0.94046 0.86643 0.79593 0.82982 0.78747 1.20258 1.21157 1.20082 1.20449 0.92702 0.88493 1.52147 0.92129 1.19227 0.92766 0.89980 0.94602 1.21183 0.98549 0.96880 0.79374 1.45477 1.07941 1.65774 1.11923 1.17684 0.85760 0.78864 0.84659 1.90604 1.23428 1.52812 1.74081 1.20843 0.93424 1.06277 0.95911 1.21822 0.96380 0.92124 0.95242 1.22060 1.00580 1.03171 0.94597 1.22857 0.87131 0.92745 1.00278 1.68160 1.26804 1.15007 1.09271 1.23099 0.97903 0.97326 0.92388 1.88136 0.92311 1.84760 1.04337 1.24865 1.03812 0.74867 0.90536 1.93068 1.92776 1.41672 1.89205 1.93061 1.96264 1.61596 1.65846 1.22942 1.01699 1.06451 0.92490 1.22967 0.98455 0.99931 1.03634 0.92432 0.95983 0.86081 0.76746 0.83430 0.83903 0.82075 0.84824 0.90167 0.91395 0.91327 0.90587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -22.35 10.11 55.43 0.56 -21.79 16 2 C 0.08 1.86 5.31 -17.82 -0.09 1.76 16 3 Si 0.89 19.67 29.54 -169.99 -5.02 14.65 16 4 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 5 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 7 C -0.50 -12.13 8.43 -34.44 -0.29 -12.42 16 8 H 0.06 1.47 7.82 -52.49 -0.41 1.06 16 9 C 0.03 0.78 2.04 -155.66 -0.32 0.46 16 10 C 0.16 3.64 4.62 -4.04 -0.02 3.62 16 11 N -0.67 -13.50 4.96 -61.39 -0.30 -13.80 16 12 C 0.55 11.08 7.73 -12.54 -0.10 10.98 16 13 O -0.53 -11.92 13.81 5.27 0.07 -11.85 16 14 C -0.15 -2.65 5.91 -104.63 -0.62 -3.27 16 15 C -0.03 -0.39 9.62 -38.90 -0.37 -0.76 16 16 C -0.18 -2.05 10.09 -39.48 -0.40 -2.45 16 17 C 0.13 1.63 11.16 -17.49 -0.20 1.43 16 18 N -0.48 -7.58 7.80 -11.68 -0.09 -7.67 16 19 C 0.14 2.46 6.91 -16.37 -0.11 2.35 16 20 S 0.07 1.12 19.26 -107.50 -2.07 -0.95 16 21 C 0.22 2.99 5.42 101.05 0.55 3.54 16 22 F -0.19 -2.82 16.44 2.25 0.04 -2.78 16 23 F -0.19 -2.74 16.44 2.25 0.04 -2.70 16 24 C -0.20 -4.11 9.96 -26.69 -0.27 -4.38 16 25 C -0.21 -4.16 9.92 -26.69 -0.26 -4.43 16 26 H 0.26 6.83 8.32 -40.82 -0.34 6.49 16 27 H 0.02 0.48 8.09 -51.93 -0.42 0.06 16 28 H 0.12 3.13 5.89 -51.93 -0.31 2.82 16 29 H 0.40 7.49 6.28 -40.82 -0.26 7.23 16 30 H 0.15 1.79 6.58 -52.48 -0.35 1.45 16 31 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 32 H 0.16 1.42 8.06 -52.49 -0.42 1.00 16 33 H 0.13 1.25 8.14 -51.91 -0.42 0.83 16 34 H 0.08 1.68 8.14 -51.93 -0.42 1.26 16 35 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 36 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 37 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 LS Contribution 336.59 15.07 5.07 5.07 Total: -1.00 -29.03 336.59 -8.04 -37.07 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: -3.83 Total: 8.31 kcal Atomic # 6 Polarization: -1.06 SS G_CDS: -2.50 Total: -3.56 kcal Atomic # 7 Polarization: -43.43 SS G_CDS: 0.16 Total: -43.26 kcal Atomic # 8 Polarization: -11.92 SS G_CDS: 0.07 Total: -11.85 kcal Atomic # 9 Polarization: -5.56 SS G_CDS: 0.07 Total: -5.49 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -5.02 Total: 14.65 kcal Atomic # 16 Polarization: 1.12 SS G_CDS: -2.07 Total: -0.95 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -29.03 -8.04 -37.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797685591.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.821 kcal (2) G-P(sol) polarization free energy of solvation -29.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds