Wall clock time and date at job start Tue Mar 31 2020 15:01:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 120.00215 * 2 1 4 4 H 1.48503 * 109.46801 * 240.00042 * 3 2 1 5 5 H 1.48501 * 109.47113 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47197 * 120.00052 * 3 2 1 7 7 C 1.37881 * 119.99961 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00427 * 175.54365 * 7 2 1 9 9 C 1.50702 * 119.99863 * 355.81837 * 7 2 1 10 10 C 1.53005 * 115.54830 * 35.31630 * 9 7 2 11 11 N 1.46504 * 109.47104 * 54.18301 * 10 9 7 12 12 C 1.34773 * 119.99845 * 184.99493 * 11 10 9 13 13 O 1.21603 * 120.00270 * 5.06953 * 12 11 10 14 14 C 1.47389 * 119.99688 * 185.07054 * 12 11 10 15 15 C 1.39973 * 120.61496 * 5.12557 * 14 12 11 16 16 C 1.38332 * 118.37563 * 179.76029 * 15 14 12 17 17 C 1.38408 * 119.51913 * 0.54014 * 16 15 14 18 18 N 1.31818 * 121.23075 * 359.70461 * 17 16 15 19 19 C 1.32502 * 121.76786 * 0.02562 * 18 17 16 20 20 S 1.76200 * 119.83804 * 180.02562 * 19 18 17 21 21 C 1.81008 * 99.99558 * 359.97438 * 20 19 18 22 22 F 1.39895 * 109.47102 * 300.00008 * 21 20 19 23 23 F 1.39897 * 109.46982 * 60.00275 * 21 20 19 24 24 C 1.52996 * 117.49965 * 249.65002 * 9 7 2 25 25 C 1.52994 * 117.49931 * 180.98471 * 9 7 2 26 26 H 0.96998 * 119.99822 * 4.99671 * 1 2 3 27 27 H 1.08997 * 109.47081 * 174.17752 * 10 9 7 28 28 H 1.08998 * 109.46943 * 294.18002 * 10 9 7 29 29 H 0.96996 * 119.99687 * 4.99039 * 11 10 9 30 30 H 1.08005 * 120.81351 * 0.02562 * 15 14 12 31 31 H 1.08000 * 120.24089 * 180.24377 * 16 15 14 32 32 H 1.08002 * 119.38664 * 179.71992 * 17 16 15 33 33 H 1.09007 * 109.46829 * 179.97438 * 21 20 19 34 34 H 1.08998 * 117.49870 * 359.97438 * 24 9 7 35 35 H 1.08994 * 117.50177 * 145.02346 * 24 9 7 36 36 H 1.09001 * 117.50246 * 214.97987 * 25 9 7 37 37 H 1.08999 * 117.50019 * 359.97438 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0821 -1.1956 -0.0721 9 6 1.2540 -2.4974 0.0963 10 6 -0.0992 -2.5335 -0.6169 11 7 0.0756 -2.1373 -2.0164 12 6 -0.9998 -1.9983 -2.8168 13 8 -2.1194 -2.1112 -2.3559 14 6 -0.8188 -1.7095 -4.2507 15 6 0.4613 -1.6825 -4.8164 16 6 0.5772 -1.4115 -6.1679 17 6 -0.5622 -1.1658 -6.9144 18 7 -1.7591 -1.1906 -6.3628 19 6 -1.9283 -1.4499 -5.0744 20 16 -3.5519 -1.4707 -4.3902 21 6 -4.5211 -1.0835 -5.8690 22 9 -4.1308 0.1634 -6.3691 23 9 -4.3012 -2.0654 -6.8410 24 6 1.3907 -3.2977 1.3931 25 6 2.0771 -3.7869 0.1153 26 1 -0.4850 0.8368 -0.0732 27 1 -0.5059 -3.5438 -0.5734 28 1 -0.7865 -1.8438 -0.1271 29 1 0.9653 -1.9750 -2.3669 30 1 1.3368 -1.8728 -4.2132 31 1 1.5500 -1.3871 -6.6363 32 1 -0.4688 -0.9500 -7.9685 33 1 -5.5803 -1.0573 -5.6127 34 1 2.0238 -2.8818 2.1768 35 1 0.5168 -3.8503 1.7379 36 1 1.6546 -4.6612 -0.3799 37 1 3.1615 -3.6926 0.0581 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000797685591.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:01:59 Heat of formation + Delta-G solvation = -74.481724 kcal Electronic energy + Delta-G solvation = -25665.293544 eV Core-core repulsion = 21591.493728 eV Total energy + Delta-G solvation = -4073.799816 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.080 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.95228 -48.05964 -41.51202 -39.95810 -38.41181 -35.06162 -34.16774 -33.53960 -32.49494 -28.09091 -27.85450 -27.34616 -25.22786 -24.74110 -22.96583 -21.52806 -21.14459 -19.93410 -19.06266 -18.55756 -18.30192 -18.17214 -17.51716 -17.46889 -16.75860 -16.33051 -16.14801 -15.83288 -15.60247 -15.23126 -14.91059 -14.76256 -14.58147 -14.39732 -14.35304 -13.93786 -13.59102 -13.51101 -13.34731 -12.88348 -12.75215 -12.60712 -12.31654 -12.02794 -11.88728 -11.43722 -11.30407 -10.92328 -10.87472 -10.84904 -10.66933 -10.39455 -10.13548 -9.73489 -8.97083 -7.93065 -6.19131 -0.48943 0.00440 0.02131 0.56235 1.41890 1.46650 1.51797 1.92378 2.35183 2.41942 2.71538 2.95964 3.06915 3.40209 3.58727 3.62517 3.65949 3.69916 3.79192 3.93608 4.22133 4.28824 4.45400 4.55721 4.75006 4.81943 4.83449 4.98360 5.01336 5.14788 5.31459 5.46344 5.54552 5.61711 5.81572 6.00549 6.37661 6.53819 6.74512 6.90436 7.39104 7.46532 8.91731 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.015330 B = 0.003986 C = 0.003847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.097184 B = 7022.829014 C = 7276.932067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.037 3.963 3 Si 0.943 3.057 4 H -0.265 1.265 5 H -0.297 1.297 6 H -0.276 1.276 7 C -0.502 4.502 8 H 0.060 0.940 9 C 0.007 3.993 10 C 0.175 3.825 11 N -0.664 5.664 12 C 0.541 3.459 13 O -0.562 6.562 14 C -0.180 4.180 15 C -0.031 4.031 16 C -0.159 4.159 17 C 0.132 3.868 18 N -0.499 5.499 19 C 0.127 3.873 20 S 0.011 5.989 21 C 0.235 3.765 22 F -0.194 7.194 23 F -0.191 7.191 24 C -0.201 4.201 25 C -0.184 4.184 26 H 0.255 0.745 27 H 0.021 0.979 28 H 0.083 0.917 29 H 0.404 0.596 30 H 0.163 0.837 31 H 0.191 0.809 32 H 0.203 0.797 33 H 0.181 0.819 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.085 0.915 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.102 -2.958 -14.375 14.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.165 4.165 3 Si 0.770 3.230 4 H -0.190 1.190 5 H -0.224 1.224 6 H -0.201 1.201 7 C -0.540 4.540 8 H 0.079 0.921 9 C 0.006 3.994 10 C 0.051 3.949 11 N -0.310 5.310 12 C 0.327 3.673 13 O -0.445 6.445 14 C -0.192 4.192 15 C -0.058 4.058 16 C -0.181 4.181 17 C -0.029 4.029 18 N -0.211 5.211 19 C -0.122 4.122 20 S 0.248 5.752 21 C 0.073 3.927 22 F -0.176 7.176 23 F -0.173 7.173 24 C -0.240 4.240 25 C -0.221 4.221 26 H 0.065 0.935 27 H 0.039 0.961 28 H 0.101 0.899 29 H 0.240 0.760 30 H 0.180 0.820 31 H 0.208 0.792 32 H 0.219 0.781 33 H 0.198 0.802 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.104 0.896 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -3.303 -2.950 -13.372 14.086 hybrid contribution 1.856 1.113 -0.426 2.205 sum -1.447 -1.837 -13.798 13.995 Atomic orbital electron populations 1.70028 1.06702 1.26642 1.49021 1.25555 0.95274 1.01463 0.94204 0.85845 0.78363 0.79833 0.78986 1.18977 1.22359 1.20137 1.20651 0.92711 0.89338 1.51281 0.92145 1.19266 0.93251 0.90733 0.96122 1.20813 0.97936 0.95700 0.80410 1.45349 1.08383 1.66131 1.11122 1.18180 0.85127 0.77938 0.86040 1.90589 1.24611 1.53906 1.75391 1.20668 0.95272 1.09075 0.94207 1.22113 0.95291 0.91682 0.96763 1.22544 1.02359 1.00060 0.93125 1.23673 0.86365 0.90746 1.02120 1.68194 1.28770 1.15723 1.08452 1.23053 0.97510 0.98454 0.93141 1.88144 0.94150 1.85286 1.07642 1.25030 1.04992 0.73995 0.88663 1.93044 1.93053 1.42305 1.89169 1.93042 1.96406 1.61929 1.65928 1.22962 1.02258 1.06280 0.92461 1.22957 0.98661 0.98641 1.01807 0.93520 0.96055 0.89884 0.76029 0.81980 0.79189 0.78073 0.80197 0.90543 0.90647 0.89614 0.89591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -47.23 10.11 21.45 0.22 -47.02 16 2 C 0.04 1.84 5.31 84.66 0.45 2.29 16 3 Si 0.94 40.31 29.54 68.60 2.03 42.34 16 4 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 5 H -0.30 -13.17 7.11 99.48 0.71 -12.46 16 6 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 7 C -0.50 -24.11 8.43 25.60 0.22 -23.90 16 8 H 0.06 2.85 7.82 -2.91 -0.02 2.83 16 9 C 0.01 0.31 2.04 -52.93 -0.11 0.20 16 10 C 0.18 8.03 4.62 86.38 0.40 8.43 16 11 N -0.66 -27.39 4.96 -466.41 -2.32 -29.71 16 12 C 0.54 22.68 7.73 86.65 0.67 23.35 16 13 O -0.56 -26.79 13.81 -4.04 -0.06 -26.84 16 14 C -0.18 -6.26 5.91 -19.87 -0.12 -6.38 16 15 C -0.03 -0.80 9.62 22.71 0.22 -0.58 16 16 C -0.16 -2.95 10.09 22.33 0.23 -2.72 16 17 C 0.13 2.81 11.16 84.74 0.95 3.75 16 18 N -0.50 -14.97 7.80 -190.86 -1.49 -16.46 16 19 C 0.13 4.40 6.91 85.17 0.59 4.99 16 20 S 0.01 0.38 19.26 -56.49 -1.09 -0.71 16 21 C 0.24 6.16 5.42 113.37 0.61 6.77 16 22 F -0.19 -5.72 16.44 44.97 0.74 -4.98 16 23 F -0.19 -5.44 16.44 44.97 0.74 -4.70 16 24 C -0.20 -8.22 9.96 30.62 0.30 -7.92 16 25 C -0.18 -6.83 9.92 30.62 0.30 -6.53 16 26 H 0.26 13.67 8.32 -92.71 -0.77 12.89 16 27 H 0.02 0.96 8.09 -2.39 -0.02 0.94 16 28 H 0.08 4.50 5.89 -2.39 -0.01 4.49 16 29 H 0.40 15.15 6.28 -92.71 -0.58 14.57 16 30 H 0.16 3.57 6.58 -2.91 -0.02 3.55 16 31 H 0.19 1.75 8.06 -2.91 -0.02 1.73 16 32 H 0.20 2.54 8.06 -2.91 -0.02 2.51 16 33 H 0.18 3.04 8.14 -2.39 -0.02 3.02 16 34 H 0.08 3.15 8.14 -2.39 -0.02 3.13 16 35 H 0.08 2.93 8.14 -2.39 -0.02 2.91 16 36 H 0.09 2.90 8.14 -2.39 -0.02 2.88 16 37 H 0.09 3.04 8.14 -2.39 -0.02 3.02 16 Total: -1.00 -65.37 336.59 4.03 -61.33 By element: Atomic # 1 Polarization: 24.44 SS G_CDS: 0.55 Total: 24.99 kcal Atomic # 6 Polarization: -2.96 SS G_CDS: 4.71 Total: 1.75 kcal Atomic # 7 Polarization: -89.59 SS G_CDS: -3.59 Total: -93.18 kcal Atomic # 8 Polarization: -26.79 SS G_CDS: -0.06 Total: -26.84 kcal Atomic # 9 Polarization: -11.16 SS G_CDS: 1.48 Total: -9.68 kcal Atomic # 14 Polarization: 40.31 SS G_CDS: 2.03 Total: 42.34 kcal Atomic # 16 Polarization: 0.38 SS G_CDS: -1.09 Total: -0.71 kcal Total: -65.37 4.03 -61.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797685591.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.148 kcal (2) G-P(sol) polarization free energy of solvation -65.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds