Wall clock time and date at job start Tue Mar 31 2020 14:57:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 119.99909 * 2 1 4 4 H 1.48498 * 109.46989 * 239.99544 * 3 2 1 5 5 H 1.48505 * 109.47164 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47386 * 119.99416 * 3 2 1 7 7 C 1.37879 * 120.00007 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99807 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00176 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47176 * 179.97438 * 9 7 2 11 11 O 1.45193 * 109.46877 * 180.02562 * 10 9 7 12 12 C 1.34238 * 116.99793 * 180.02562 * 11 10 9 13 13 O 1.20826 * 120.00056 * 359.97438 * 12 11 10 14 14 C 1.50703 * 120.00045 * 180.02562 * 12 11 10 15 15 N 1.46500 * 109.47119 * 179.97438 * 14 12 11 16 16 S 1.65597 * 120.00016 * 163.75459 * 15 14 12 17 17 O 1.42099 * 106.40394 * 310.10699 * 16 15 14 18 18 O 1.42100 * 106.39992 * 177.18526 * 16 15 14 19 19 C 1.76202 * 107.21459 * 63.64465 * 16 15 14 20 20 C 1.38119 * 120.03743 * 244.26269 * 19 16 15 21 21 C 1.38267 * 120.07766 * 180.29822 * 20 19 16 22 22 C 1.38316 * 120.14586 * 359.45194 * 21 20 19 23 23 C 1.38088 * 120.07133 * 0.55161 * 22 21 20 24 24 C 1.38888 * 120.03694 * 64.29176 * 19 16 15 25 25 N 1.39675 * 120.07689 * 359.95188 * 24 19 16 26 26 H 0.96994 * 120.00195 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.47161 * 59.99492 * 9 7 2 28 28 H 1.09005 * 109.47111 * 299.99854 * 9 7 2 29 29 H 1.09001 * 109.46520 * 59.99999 * 10 9 7 30 30 H 1.08999 * 109.47135 * 300.00544 * 10 9 7 31 31 H 1.08996 * 109.47103 * 59.99225 * 14 12 11 32 32 H 1.09002 * 109.46509 * 299.99411 * 14 12 11 33 33 H 0.97004 * 119.99722 * 343.76004 * 15 14 12 34 34 H 1.08007 * 119.96547 * 0.02574 * 20 19 16 35 35 H 1.08001 * 119.92800 * 179.70275 * 21 20 19 36 36 H 1.07994 * 119.96655 * 180.27268 * 22 21 20 37 37 H 1.08000 * 120.03135 * 179.70419 * 23 22 21 38 38 H 0.96998 * 119.99836 * 354.26689 * 25 24 19 39 39 H 0.96996 * 120.00021 * 174.26795 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1027 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 8 1.5194 -4.9195 -0.0001 12 6 2.2505 -6.0453 0.0004 13 8 3.4571 -5.9820 0.0008 14 6 1.5664 -7.3881 -0.0008 15 7 2.5754 -8.4502 -0.0006 16 16 2.1471 -9.9990 0.3995 17 8 1.4246 -9.9130 1.6200 18 8 3.3160 -10.7918 0.2424 19 6 1.0016 -10.5545 -0.8187 20 6 -0.2988 -10.8515 -0.4604 21 6 -1.1967 -11.2933 -1.4145 22 6 -0.7994 -11.4287 -2.7324 23 6 0.4993 -11.1337 -3.0974 24 6 1.4055 -10.6949 -2.1401 25 7 2.7198 -10.3951 -2.5060 26 1 -0.4850 0.8400 -0.0004 27 1 0.6247 -2.5571 -0.8896 28 1 0.6241 -2.5567 0.8903 29 1 2.8720 -3.6042 0.8906 30 1 2.8721 -3.6043 -0.8894 31 1 0.9445 -7.4782 -0.8914 32 1 0.9427 -7.4788 0.8886 33 1 3.4944 -8.2462 -0.2348 34 1 -0.6136 -10.7426 0.5670 35 1 -2.2117 -11.5294 -1.1308 36 1 -1.5043 -11.7699 -3.4761 37 1 0.8101 -11.2442 -4.1258 38 1 3.3283 -10.0101 -1.8561 39 1 3.0239 -10.5719 -3.4099 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000800234695.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:22 Heat of formation + Delta-G solvation = -165.219430 kcal Electronic energy + Delta-G solvation = -25095.979562 eV Core-core repulsion = 21129.332579 eV Total energy + Delta-G solvation = -3966.646983 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.55526 -40.34086 -38.54273 -38.02196 -37.08302 -36.10103 -35.46789 -35.44135 -32.39433 -32.16651 -29.66886 -28.99151 -26.78601 -24.33802 -23.31779 -23.18501 -22.17727 -20.84117 -19.52994 -18.95304 -18.62610 -18.35714 -17.96082 -17.86826 -17.64277 -17.32907 -16.62624 -16.40627 -15.73793 -15.72134 -15.49013 -15.12180 -14.83800 -14.53688 -14.37661 -14.31051 -14.14624 -13.48050 -13.38471 -13.27356 -13.19020 -13.11929 -13.01658 -12.59958 -12.58452 -12.40643 -11.95941 -11.82781 -11.71987 -11.56137 -11.49445 -11.39864 -10.83427 -10.60126 -10.34287 -8.79073 -8.26617 -6.39652 -0.79607 -0.03481 0.57151 1.05811 1.40353 1.44747 1.48198 1.54387 1.96405 2.40198 2.50930 2.67236 2.77642 3.08050 3.27874 3.45438 3.84745 4.06437 4.13667 4.17082 4.24932 4.25445 4.33322 4.46282 4.51224 4.66048 4.70603 4.93301 5.01665 5.23718 5.33450 5.48098 5.49508 5.56133 5.72946 5.74739 5.82517 6.06831 6.24724 6.60393 6.61098 6.74257 7.30144 8.85641 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.020114 B = 0.002391 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.721851 B =11710.152955 C =12183.185654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.008 3.992 3 Si 0.971 3.029 4 H -0.266 1.266 5 H -0.280 1.280 6 H -0.267 1.267 7 C -0.552 4.552 8 H 0.065 0.935 9 C 0.030 3.970 10 C 0.090 3.910 11 O -0.359 6.359 12 C 0.456 3.544 13 O -0.532 6.532 14 C 0.131 3.869 15 N -1.112 6.112 16 S 2.719 3.281 17 O -0.982 6.982 18 O -0.979 6.979 19 C -0.763 4.763 20 C 0.005 3.995 21 C -0.200 4.200 22 C -0.017 4.017 23 C -0.220 4.220 24 C 0.301 3.699 25 N -0.863 5.863 26 H 0.268 0.732 27 H 0.009 0.991 28 H 0.007 0.993 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.142 0.858 32 H 0.140 0.860 33 H 0.428 0.572 34 H 0.146 0.854 35 H 0.150 0.850 36 H 0.159 0.841 37 H 0.152 0.848 38 H 0.396 0.604 39 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.038 -25.833 -7.411 26.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.192 4.192 3 Si 0.795 3.205 4 H -0.190 1.190 5 H -0.205 1.205 6 H -0.192 1.192 7 C -0.590 4.590 8 H 0.083 0.917 9 C -0.008 4.008 10 C 0.017 3.983 11 O -0.275 6.275 12 C 0.299 3.701 13 O -0.422 6.422 14 C 0.004 3.996 15 N -0.875 5.875 16 S 2.812 3.188 17 O -0.972 6.972 18 O -0.969 6.969 19 C -0.860 4.860 20 C -0.015 4.015 21 C -0.220 4.220 22 C -0.036 4.036 23 C -0.243 4.243 24 C 0.190 3.810 25 N -0.403 5.403 26 H 0.077 0.923 27 H 0.028 0.972 28 H 0.026 0.974 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.160 0.840 32 H 0.157 0.843 33 H 0.267 0.733 34 H 0.163 0.837 35 H 0.168 0.832 36 H 0.177 0.823 37 H 0.169 0.831 38 H 0.226 0.774 39 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -0.676 -26.128 -6.631 26.965 hybrid contribution 0.854 1.309 -0.631 1.686 sum 0.178 -24.819 -7.262 25.860 Atomic orbital electron populations 1.70076 1.07759 1.28342 1.50303 1.25931 0.95815 1.03313 0.94115 0.85410 0.78217 0.77621 0.79270 1.19045 1.20548 1.19186 1.21353 0.93709 0.91302 1.52587 0.91704 1.18989 0.94388 0.90501 0.96890 1.23215 0.95055 0.78746 1.01263 1.86496 1.42364 1.15687 1.82908 1.23998 0.86519 0.87725 0.71830 1.90619 1.16684 1.88106 1.46820 1.20843 0.90084 0.80123 1.08528 1.55378 1.19545 1.24175 1.88442 1.00835 0.73028 0.71307 0.73607 1.93540 1.74519 1.86063 1.43030 1.93573 1.48941 1.67173 1.87211 1.29822 1.14073 1.31244 1.10883 1.20953 0.89940 0.89705 1.00930 1.21394 1.01181 1.06015 0.93440 1.21647 0.95101 0.90167 0.96645 1.21070 0.94200 1.09338 0.99695 1.17393 0.85279 0.87192 0.91162 1.42979 1.09352 1.70214 1.17729 0.92323 0.97232 0.97434 0.92094 0.91759 0.84049 0.84286 0.73349 0.83655 0.83197 0.82339 0.83058 0.77368 0.74758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.54 13.29 21.45 0.28 -54.25 16 2 C 0.01 0.42 5.46 84.66 0.46 0.88 16 3 Si 0.97 42.90 29.54 68.60 2.03 44.92 16 4 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 5 H -0.28 -12.05 7.11 99.48 0.71 -11.35 16 6 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 7 C -0.55 -30.59 9.11 25.60 0.23 -30.36 16 8 H 0.06 3.43 7.74 -2.91 -0.02 3.41 16 9 C 0.03 1.53 5.35 29.85 0.16 1.69 16 10 C 0.09 3.85 5.40 71.98 0.39 4.24 16 11 O -0.36 -13.09 10.22 -51.50 -0.53 -13.62 16 12 C 0.46 13.78 8.03 71.24 0.57 14.35 16 13 O -0.53 -18.44 15.49 21.96 0.34 -18.10 16 14 C 0.13 2.64 6.81 85.63 0.58 3.22 16 15 N -1.11 -21.61 5.38 -190.79 -1.03 -22.64 16 16 S 2.72 57.25 4.98 -56.49 -0.28 56.97 16 17 O -0.98 -25.69 16.47 -128.00 -2.11 -27.80 16 18 O -0.98 -24.72 16.47 -128.00 -2.11 -26.82 16 19 C -0.76 -13.74 5.87 22.40 0.13 -13.61 16 20 C 0.00 0.08 9.54 22.25 0.21 0.29 16 21 C -0.20 -2.49 10.04 22.30 0.22 -2.27 16 22 C -0.02 -0.17 10.04 22.25 0.22 0.05 16 23 C -0.22 -2.65 9.90 22.40 0.22 -2.42 16 24 C 0.30 4.71 6.72 38.21 0.26 4.97 16 25 N -0.86 -11.23 8.84 -51.37 -0.45 -11.69 16 26 H 0.27 14.77 8.31 -92.71 -0.77 14.00 16 27 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.01 0.40 8.14 -2.38 -0.02 0.38 16 29 H 0.06 2.58 8.13 -2.39 -0.02 2.56 16 30 H 0.06 2.67 8.13 -2.39 -0.02 2.65 16 31 H 0.14 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.14 2.44 7.76 -2.39 -0.02 2.43 16 33 H 0.43 8.19 7.73 -96.74 -0.75 7.44 16 34 H 0.15 2.20 7.33 -2.91 -0.02 2.17 16 35 H 0.15 1.18 8.06 -2.91 -0.02 1.16 16 36 H 0.16 0.68 8.06 -2.91 -0.02 0.65 16 37 H 0.15 1.07 8.06 -2.91 -0.02 1.04 16 38 H 0.40 5.71 5.96 -92.71 -0.55 5.15 16 39 H 0.42 3.19 8.85 -92.71 -0.82 2.37 16 Total: -1.00 -75.50 352.81 -1.18 -76.69 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: -1.00 Total: 15.31 kcal Atomic # 6 Polarization: -22.64 SS G_CDS: 3.67 Total: -18.97 kcal Atomic # 7 Polarization: -87.38 SS G_CDS: -1.19 Total: -88.58 kcal Atomic # 8 Polarization: -81.94 SS G_CDS: -4.40 Total: -86.34 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.92 kcal Atomic # 16 Polarization: 57.25 SS G_CDS: -0.28 Total: 56.97 kcal Total: -75.50 -1.18 -76.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800234695.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.531 kcal (2) G-P(sol) polarization free energy of solvation -75.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds