Wall clock time and date at job start Tue Mar 31 2020 14:51:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 120.00184 * 2 1 4 4 H 1.48506 * 109.47046 * 269.99520 * 3 2 1 5 5 H 1.48501 * 109.47115 * 29.99629 * 3 2 1 6 6 H 1.48503 * 109.47074 * 149.99742 * 3 2 1 7 7 C 1.37877 * 120.00075 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00007 * 0.02562 * 7 2 1 9 9 C 1.50701 * 120.00338 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.47178 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46945 * 179.97438 * 10 9 7 12 12 O 1.45205 * 109.47172 * 180.02562 * 11 10 9 13 13 C 1.34710 * 117.00163 * 180.02562 * 12 11 10 14 14 O 1.21463 * 120.00097 * 359.97438 * 13 12 11 15 15 C 1.47739 * 119.99785 * 180.02562 * 13 12 11 16 16 C 1.39663 * 120.11901 * 0.25139 * 15 13 12 17 17 C 1.37966 * 120.00297 * 180.25655 * 16 15 13 18 18 C 1.38254 * 120.23002 * 359.48663 * 17 16 15 19 19 S 1.76204 * 119.88250 * 180.27936 * 18 17 16 20 20 N 1.65601 * 107.21598 * 115.00186 * 19 18 17 21 21 O 1.42097 * 106.40129 * 228.54207 * 19 18 17 22 22 O 1.42098 * 106.40425 * 1.46159 * 19 18 17 23 23 C 1.38986 * 120.23299 * 0.25886 * 18 17 16 24 24 N 1.39712 * 120.00279 * 179.97438 * 23 18 17 25 25 C 1.38664 * 119.99758 * 359.97438 * 23 18 17 26 26 H 0.97003 * 119.99809 * 0.02562 * 1 2 3 27 27 H 1.08997 * 109.46807 * 60.00395 * 9 7 2 28 28 H 1.08996 * 109.47021 * 300.00748 * 9 7 2 29 29 H 1.08997 * 109.47104 * 60.00362 * 10 9 7 30 30 H 1.08996 * 109.47579 * 300.00191 * 10 9 7 31 31 H 1.08997 * 109.47356 * 60.00559 * 11 10 9 32 32 H 1.08996 * 109.47592 * 300.00170 * 11 10 9 33 33 H 1.08007 * 119.99988 * 0.02562 * 16 15 13 34 34 H 1.08002 * 119.88774 * 179.77127 * 17 16 15 35 35 H 0.96999 * 120.00548 * 0.02562 * 20 19 18 36 36 H 0.97000 * 119.99580 * 179.97438 * 20 19 18 37 37 H 0.96996 * 119.99961 * 0.02562 * 24 23 18 38 38 H 0.97004 * 120.00038 * 179.97438 * 24 23 18 39 39 H 1.07997 * 120.11548 * 179.97438 * 25 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6366 0.0010 11 6 5.5515 -2.6366 0.0009 12 8 6.0355 -4.0056 0.0002 13 6 7.3710 -4.1822 0.0006 14 8 8.1109 -3.2189 0.0011 15 6 7.9356 -5.5474 -0.0007 16 6 7.0871 -6.6567 -0.0076 17 6 7.6169 -7.9306 -0.0034 18 6 8.9871 -8.1146 -0.0031 19 16 9.6539 -9.7456 -0.0052 20 7 10.4588 -9.9442 -1.4387 21 8 10.6406 -9.7770 1.0168 22 8 8.5444 -10.6326 -0.0417 23 6 9.8405 -7.0176 -0.0015 24 7 11.2244 -7.2091 -0.0007 25 6 9.3183 -5.7330 -0.0008 26 1 -0.4850 0.8401 -0.0004 27 1 3.8745 -0.6802 0.8912 28 1 3.8752 -0.6804 -0.8887 29 1 3.6585 -3.1502 -0.8893 30 1 3.6578 -3.1507 0.8906 31 1 5.9149 -2.1230 0.8910 32 1 5.9149 -2.1227 -0.8889 33 1 6.0160 -6.5173 -0.0124 34 1 6.9589 -8.7871 -0.0050 35 1 10.4886 -9.2195 -2.0827 36 1 10.9011 -10.7851 -1.6340 37 1 11.5897 -8.1076 -0.0015 38 1 11.8200 -6.4434 0.0000 39 1 9.9797 -4.8792 0.0008 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000803704699.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:39 Heat of formation + Delta-G solvation = -142.964248 kcal Electronic energy + Delta-G solvation = -24558.652141 eV Core-core repulsion = 20592.970216 eV Total energy + Delta-G solvation = -3965.681926 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.78968 -39.52017 -37.73047 -36.68192 -36.31035 -35.29943 -34.12423 -33.70764 -32.12780 -31.75847 -29.43258 -27.75474 -25.40037 -23.08161 -22.95638 -21.25573 -20.32486 -20.07718 -18.89889 -18.31397 -18.18652 -17.47622 -17.11470 -16.66369 -16.51813 -16.40169 -16.03680 -15.68469 -14.75158 -14.51729 -14.46321 -14.27841 -13.91912 -13.80684 -13.16221 -12.78181 -12.66989 -12.55312 -12.48249 -12.42853 -12.09134 -11.89781 -11.41559 -11.37925 -11.11637 -11.08495 -11.02506 -10.78436 -10.52899 -10.07552 -9.96504 -9.86022 -9.76849 -9.28235 -8.59463 -8.40419 -6.09504 -4.08790 -0.23060 0.01044 0.96121 2.10097 2.47321 2.59714 3.02726 3.08002 3.27490 3.30406 3.35410 3.38235 3.93472 4.36698 4.40328 4.42663 4.76333 4.78879 4.98618 5.23464 5.24006 5.29964 5.37680 5.39020 5.40347 5.65519 5.78597 5.85852 6.09975 6.21333 6.33132 6.41858 6.54067 6.58677 6.72990 6.90754 7.16416 7.27973 7.61087 7.71712 8.46748 8.94682 9.51771 11.03579 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.031583 B = 0.002017 C = 0.001922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.326546 B =13875.347421 C =14563.490144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.067 3.933 3 Si 0.880 3.120 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.522 4.522 8 H 0.074 0.926 9 C -0.010 4.010 10 C -0.102 4.102 11 C 0.066 3.934 12 O -0.345 6.345 13 C 0.499 3.501 14 O -0.499 6.499 15 C -0.013 4.013 16 C -0.139 4.139 17 C 0.014 3.986 18 C -0.729 4.729 19 S 2.703 3.297 20 N -1.253 6.253 21 O -0.964 6.964 22 O -0.959 6.959 23 C 0.299 3.701 24 N -0.867 5.867 25 C -0.151 4.151 26 H 0.264 0.736 27 H 0.019 0.981 28 H 0.015 0.985 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.152 0.848 34 H 0.155 0.845 35 H 0.418 0.582 36 H 0.422 0.578 37 H 0.404 0.596 38 H 0.412 0.588 39 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.882 -20.089 -3.514 32.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.134 4.134 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.560 4.560 8 H 0.092 0.908 9 C -0.048 4.048 10 C -0.139 4.139 11 C -0.007 4.007 12 O -0.261 6.261 13 C 0.342 3.658 14 O -0.389 6.389 15 C -0.016 4.016 16 C -0.160 4.160 17 C -0.005 4.005 18 C -0.823 4.823 19 S 2.792 3.208 20 N -0.928 5.928 21 O -0.953 6.953 22 O -0.948 6.948 23 C 0.189 3.811 24 N -0.408 5.408 25 C -0.175 4.175 26 H 0.074 0.926 27 H 0.037 0.963 28 H 0.033 0.967 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.170 0.830 34 H 0.172 0.828 35 H 0.245 0.755 36 H 0.252 0.748 37 H 0.236 0.764 38 H 0.242 0.758 39 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 25.722 -20.268 -2.643 32.854 hybrid contribution 0.835 1.811 -0.640 2.095 sum 26.557 -18.457 -3.283 32.507 Atomic orbital electron populations 1.69907 1.06277 1.27000 1.50727 1.25020 0.94767 0.99188 0.94462 0.86783 0.80361 0.83594 0.78578 1.20214 1.21268 1.19002 1.21042 0.88981 0.94687 1.51305 0.90755 1.19521 0.97596 0.90968 0.96701 1.21578 0.88435 1.00924 1.03004 1.23605 0.97264 0.77461 1.02355 1.86557 1.21986 1.34755 1.82818 1.21088 0.81862 0.89252 0.73550 1.90837 1.60775 1.42314 1.44941 1.19278 0.93256 0.91013 0.98020 1.21462 1.01242 0.90908 1.02353 1.20760 0.91932 0.98579 0.89244 1.29989 1.03465 1.20048 1.28840 1.01478 0.73671 0.73018 0.72585 1.53147 1.74457 1.26242 1.39000 1.93610 1.60112 1.86253 1.55332 1.93603 1.53168 1.62164 1.85886 1.16931 0.83701 0.92405 0.88045 1.42997 1.02947 1.12505 1.82332 1.20754 0.94337 0.95851 1.06512 0.92618 0.96253 0.96702 0.91389 0.91345 0.91229 0.91247 0.83012 0.82779 0.75515 0.74789 0.76363 0.75782 0.83477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.48 13.96 55.43 0.77 -26.70 16 2 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 21.42 27.47 -169.99 -4.67 16.76 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.27 -6.20 6.54 56.52 0.37 -5.83 16 7 C -0.52 -14.62 9.66 -34.44 -0.33 -14.95 16 8 H 0.07 2.23 7.99 -52.48 -0.42 1.81 16 9 C -0.01 -0.24 4.04 -27.88 -0.11 -0.35 16 10 C -0.10 -1.94 5.53 -26.73 -0.15 -2.09 16 11 C 0.07 1.09 5.48 37.16 0.20 1.29 16 12 O -0.35 -5.23 9.47 -40.52 -0.38 -5.61 16 13 C 0.50 7.08 7.90 34.61 0.27 7.36 16 14 O -0.50 -8.11 16.13 -19.24 -0.31 -8.42 16 15 C -0.01 -0.15 5.87 -105.01 -0.62 -0.77 16 16 C -0.14 -1.37 9.61 -39.15 -0.38 -1.75 16 17 C 0.01 0.13 9.53 -39.68 -0.38 -0.25 16 18 C -0.73 -5.86 5.90 -39.30 -0.23 -6.10 16 19 S 2.70 19.20 5.54 -107.50 -0.60 18.61 16 20 N -1.25 -3.57 9.18 60.35 0.55 -3.02 16 21 O -0.96 -9.26 16.27 -57.17 -0.93 -10.19 16 22 O -0.96 -9.89 16.95 -57.17 -0.97 -10.86 16 23 C 0.30 2.33 6.71 -83.83 -0.56 1.77 16 24 N -0.87 -4.38 8.90 32.39 0.29 -4.10 16 25 C -0.15 -1.43 9.44 -38.95 -0.37 -1.79 16 26 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 27 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 28 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 29 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 30 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 31 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.15 1.40 7.61 -52.48 -0.40 1.00 16 34 H 0.15 1.10 7.32 -52.49 -0.38 0.72 16 35 H 0.42 0.45 8.92 -34.48 -0.31 0.14 16 36 H 0.42 0.45 8.96 -34.47 -0.31 0.14 16 37 H 0.40 1.84 5.88 -40.82 -0.24 1.60 16 38 H 0.41 1.22 8.84 -40.82 -0.36 0.86 16 39 H 0.15 1.26 7.65 -52.49 -0.40 0.86 16 LS Contribution 348.55 15.07 5.25 5.25 Total: -1.00 -36.97 348.55 -8.18 -45.15 By element: Atomic # 1 Polarization: 3.37 SS G_CDS: -4.44 Total: -1.08 kcal Atomic # 6 Polarization: -13.05 SS G_CDS: -2.75 Total: -15.79 kcal Atomic # 7 Polarization: -35.43 SS G_CDS: 1.62 Total: -33.82 kcal Atomic # 8 Polarization: -32.49 SS G_CDS: -2.59 Total: -35.08 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.67 Total: 16.76 kcal Atomic # 16 Polarization: 19.20 SS G_CDS: -0.60 Total: 18.61 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -36.97 -8.18 -45.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000803704699.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.811 kcal (2) G-P(sol) polarization free energy of solvation -36.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds