Wall clock time and date at job start Tue Mar 31 2020 14:51:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 120.00184 * 2 1 4 4 H 1.48506 * 109.47046 * 269.99520 * 3 2 1 5 5 H 1.48501 * 109.47115 * 29.99629 * 3 2 1 6 6 H 1.48503 * 109.47074 * 149.99742 * 3 2 1 7 7 C 1.37877 * 120.00075 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00007 * 0.02562 * 7 2 1 9 9 C 1.50701 * 120.00338 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.47178 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46945 * 179.97438 * 10 9 7 12 12 O 1.45205 * 109.47172 * 180.02562 * 11 10 9 13 13 C 1.34710 * 117.00163 * 180.02562 * 12 11 10 14 14 O 1.21463 * 120.00097 * 359.97438 * 13 12 11 15 15 C 1.47739 * 119.99785 * 180.02562 * 13 12 11 16 16 C 1.39663 * 120.11901 * 0.25139 * 15 13 12 17 17 C 1.37966 * 120.00297 * 180.25655 * 16 15 13 18 18 C 1.38254 * 120.23002 * 359.48663 * 17 16 15 19 19 S 1.76204 * 119.88250 * 180.27936 * 18 17 16 20 20 N 1.65601 * 107.21598 * 115.00186 * 19 18 17 21 21 O 1.42097 * 106.40129 * 228.54207 * 19 18 17 22 22 O 1.42098 * 106.40425 * 1.46159 * 19 18 17 23 23 C 1.38986 * 120.23299 * 0.25886 * 18 17 16 24 24 N 1.39712 * 120.00279 * 179.97438 * 23 18 17 25 25 C 1.38664 * 119.99758 * 359.97438 * 23 18 17 26 26 H 0.97003 * 119.99809 * 0.02562 * 1 2 3 27 27 H 1.08997 * 109.46807 * 60.00395 * 9 7 2 28 28 H 1.08996 * 109.47021 * 300.00748 * 9 7 2 29 29 H 1.08997 * 109.47104 * 60.00362 * 10 9 7 30 30 H 1.08996 * 109.47579 * 300.00191 * 10 9 7 31 31 H 1.08997 * 109.47356 * 60.00559 * 11 10 9 32 32 H 1.08996 * 109.47592 * 300.00170 * 11 10 9 33 33 H 1.08007 * 119.99988 * 0.02562 * 16 15 13 34 34 H 1.08002 * 119.88774 * 179.77127 * 17 16 15 35 35 H 0.96999 * 120.00548 * 0.02562 * 20 19 18 36 36 H 0.97000 * 119.99580 * 179.97438 * 20 19 18 37 37 H 0.96996 * 119.99961 * 0.02562 * 24 23 18 38 38 H 0.97004 * 120.00038 * 179.97438 * 24 23 18 39 39 H 1.07997 * 120.11548 * 179.97438 * 25 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6366 0.0010 11 6 5.5515 -2.6366 0.0009 12 8 6.0355 -4.0056 0.0002 13 6 7.3710 -4.1822 0.0006 14 8 8.1109 -3.2189 0.0011 15 6 7.9356 -5.5474 -0.0007 16 6 7.0871 -6.6567 -0.0076 17 6 7.6169 -7.9306 -0.0034 18 6 8.9871 -8.1146 -0.0031 19 16 9.6539 -9.7456 -0.0052 20 7 10.4588 -9.9442 -1.4387 21 8 10.6406 -9.7770 1.0168 22 8 8.5444 -10.6326 -0.0417 23 6 9.8405 -7.0176 -0.0015 24 7 11.2244 -7.2091 -0.0007 25 6 9.3183 -5.7330 -0.0008 26 1 -0.4850 0.8401 -0.0004 27 1 3.8745 -0.6802 0.8912 28 1 3.8752 -0.6804 -0.8887 29 1 3.6585 -3.1502 -0.8893 30 1 3.6578 -3.1507 0.8906 31 1 5.9149 -2.1230 0.8910 32 1 5.9149 -2.1227 -0.8889 33 1 6.0160 -6.5173 -0.0124 34 1 6.9589 -8.7871 -0.0050 35 1 10.4886 -9.2195 -2.0827 36 1 10.9011 -10.7851 -1.6340 37 1 11.5897 -8.1076 -0.0015 38 1 11.8200 -6.4434 0.0000 39 1 9.9797 -4.8792 0.0008 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000803704699.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:38 Heat of formation + Delta-G solvation = -172.527934 kcal Electronic energy + Delta-G solvation = -24559.934119 eV Core-core repulsion = 20592.970216 eV Total energy + Delta-G solvation = -3966.963903 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.80705 -40.34838 -38.41365 -37.90876 -36.99887 -36.03754 -35.81470 -34.07121 -33.88031 -32.73776 -30.15657 -29.39623 -26.45532 -24.61034 -23.68929 -22.29717 -22.01670 -20.65631 -19.49937 -19.21574 -19.00861 -18.71462 -18.10121 -17.81812 -17.74376 -16.94214 -16.80501 -16.38499 -16.27492 -15.80605 -15.41736 -15.18391 -14.85908 -14.78772 -14.67688 -14.21158 -13.95392 -13.77216 -13.26963 -13.25834 -13.14088 -12.87508 -12.77685 -12.55065 -12.28373 -12.08925 -12.01441 -12.00606 -11.77108 -11.58641 -11.42350 -11.41524 -11.35905 -10.77270 -10.69746 -8.99780 -8.29811 -6.34827 -0.94426 -0.64258 0.27766 1.15557 1.37075 1.38491 1.41014 1.50425 2.06423 2.33832 2.35873 2.51822 2.65187 3.05347 3.30018 3.37279 3.73827 3.99291 3.99682 4.04800 4.12543 4.30685 4.36767 4.51089 4.61208 4.73809 4.74894 4.95131 4.96185 5.13092 5.22332 5.23003 5.44437 5.46569 5.49164 5.62327 6.04655 6.25942 6.28065 6.49215 6.54111 6.73241 7.29596 8.86662 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.031583 B = 0.002017 C = 0.001922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.326546 B =13875.347421 C =14563.490144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.003 3.997 3 Si 0.950 3.050 4 H -0.265 1.265 5 H -0.285 1.285 6 H -0.245 1.245 7 C -0.533 4.533 8 H 0.035 0.965 9 C -0.010 4.010 10 C -0.093 4.093 11 C 0.074 3.926 12 O -0.348 6.348 13 C 0.502 3.498 14 O -0.523 6.523 15 C -0.031 4.031 16 C -0.147 4.147 17 C 0.013 3.987 18 C -0.730 4.730 19 S 2.728 3.272 20 N -1.234 6.234 21 O -0.988 6.988 22 O -0.991 6.991 23 C 0.305 3.695 24 N -0.852 5.852 25 C -0.152 4.152 26 H 0.267 0.733 27 H 0.026 0.974 28 H 0.026 0.974 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.153 0.847 34 H 0.167 0.833 35 H 0.429 0.571 36 H 0.433 0.567 37 H 0.409 0.591 38 H 0.424 0.576 39 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.840 -20.286 -3.995 35.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.194 4.194 3 Si 0.773 3.227 4 H -0.190 1.190 5 H -0.210 1.210 6 H -0.169 1.169 7 C -0.571 4.571 8 H 0.054 0.946 9 C -0.047 4.047 10 C -0.130 4.130 11 C 0.001 3.999 12 O -0.264 6.264 13 C 0.347 3.653 14 O -0.414 6.414 15 C -0.034 4.034 16 C -0.168 4.168 17 C -0.006 4.006 18 C -0.824 4.824 19 S 2.816 3.184 20 N -0.916 5.916 21 O -0.977 6.977 22 O -0.980 6.980 23 C 0.193 3.807 24 N -0.394 5.394 25 C -0.175 4.175 26 H 0.076 0.924 27 H 0.044 0.956 28 H 0.044 0.956 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.171 0.829 34 H 0.184 0.816 35 H 0.259 0.741 36 H 0.267 0.733 37 H 0.243 0.757 38 H 0.256 0.744 39 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 28.732 -20.487 -3.135 35.427 hybrid contribution -0.046 1.711 -0.516 1.787 sum 28.686 -18.777 -3.651 34.478 Atomic orbital electron populations 1.70063 1.08301 1.28231 1.52411 1.26022 0.95654 1.03580 0.94095 0.85658 0.79531 0.78172 0.79294 1.19040 1.21038 1.16862 1.21404 0.91733 0.93333 1.50657 0.94617 1.19451 0.94268 0.93714 0.97274 1.21328 0.90533 0.98420 1.02767 1.23293 0.95259 0.78409 1.02923 1.86538 1.23028 1.33705 1.83101 1.21560 0.81038 0.90248 0.72467 1.90818 1.60949 1.43299 1.46327 1.19193 0.94158 0.89579 1.00450 1.21494 1.01281 0.91089 1.02918 1.20924 0.92523 0.98446 0.88708 1.30117 1.03394 1.20502 1.28371 1.00596 0.72933 0.71996 0.72872 1.52718 1.73729 1.27336 1.37802 1.93585 1.60557 1.86379 1.57139 1.93570 1.54674 1.63103 1.86632 1.16904 0.84771 0.91688 0.87337 1.43003 1.01994 1.13452 1.80926 1.20846 0.93703 0.96783 1.06179 0.92430 0.95598 0.95606 0.91617 0.91767 0.90819 0.90575 0.82941 0.81561 0.74087 0.73329 0.75741 0.74380 0.82779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.32 13.96 21.45 0.30 -59.02 16 2 C 0.00 0.20 5.47 84.65 0.46 0.66 16 3 Si 0.95 43.66 27.47 68.60 1.88 45.54 16 4 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 5 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 6 H -0.25 -10.39 6.54 99.48 0.65 -9.74 16 7 C -0.53 -30.39 9.66 25.60 0.25 -30.14 16 8 H 0.04 2.23 7.99 -2.91 -0.02 2.21 16 9 C -0.01 -0.44 4.04 29.85 0.12 -0.31 16 10 C -0.09 -3.51 5.53 30.59 0.17 -3.34 16 11 C 0.07 2.37 5.48 71.98 0.39 2.77 16 12 O -0.35 -10.30 9.47 -56.19 -0.53 -10.84 16 13 C 0.50 13.88 7.90 70.33 0.56 14.43 16 14 O -0.52 -16.53 16.13 19.96 0.32 -16.21 16 15 C -0.03 -0.68 5.87 -20.11 -0.12 -0.80 16 16 C -0.15 -2.79 9.61 22.55 0.22 -2.58 16 17 C 0.01 0.22 9.53 22.21 0.21 0.43 16 18 C -0.73 -10.46 5.90 22.45 0.13 -10.33 16 19 S 2.73 33.90 5.54 -56.49 -0.31 33.58 16 20 N -1.23 -3.95 9.18 37.02 0.34 -3.61 16 21 O -0.99 -17.18 16.27 -128.00 -2.08 -19.26 16 22 O -0.99 -19.15 16.95 -128.00 -2.17 -21.32 16 23 C 0.31 4.13 6.71 38.17 0.26 4.39 16 24 N -0.85 -6.43 8.90 -51.45 -0.46 -6.89 16 25 C -0.15 -2.63 9.44 22.68 0.21 -2.42 16 26 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 27 H 0.03 1.14 7.20 -2.39 -0.02 1.12 16 28 H 0.03 1.12 7.57 -2.39 -0.02 1.10 16 29 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 30 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 31 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 32 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 33 H 0.15 2.78 7.61 -2.91 -0.02 2.76 16 34 H 0.17 2.20 7.32 -2.91 -0.02 2.18 16 35 H 0.43 -0.31 8.92 -96.74 -0.86 -1.17 16 36 H 0.43 -0.20 8.96 -96.75 -0.87 -1.07 16 37 H 0.41 2.61 5.88 -92.71 -0.54 2.07 16 38 H 0.42 1.37 8.84 -92.71 -0.82 0.55 16 39 H 0.15 2.39 7.65 -2.91 -0.02 2.37 16 Total: -1.00 -79.94 348.55 -1.85 -81.79 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -2.00 Total: 3.46 kcal Atomic # 6 Polarization: -30.10 SS G_CDS: 2.86 Total: -27.24 kcal Atomic # 7 Polarization: -69.70 SS G_CDS: 0.18 Total: -69.52 kcal Atomic # 8 Polarization: -63.16 SS G_CDS: -4.46 Total: -67.62 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 1.88 Total: 45.54 kcal Atomic # 16 Polarization: 33.90 SS G_CDS: -0.31 Total: 33.58 kcal Total: -79.94 -1.85 -81.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000803704699.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.742 kcal (2) G-P(sol) polarization free energy of solvation -79.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds