Wall clock time and date at job start Tue Mar 31 2020 16:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42901 * 109.47376 * 2 1 4 4 C 1.52998 * 109.46671 * 239.99690 * 2 1 3 5 5 S 1.81393 * 109.47169 * 55.00494 * 4 2 1 6 6 C 1.76200 * 103.00116 * 180.02562 * 5 4 2 7 7 C 1.39018 * 120.06562 * 359.71648 * 6 5 4 8 8 C 1.38073 * 119.96869 * 180.23380 * 7 6 5 9 9 C 1.38283 * 120.10560 * 0.06806 * 8 7 6 10 10 C 1.38516 * 120.13543 * 359.95694 * 9 8 7 11 11 F 1.35098 * 119.98293 * 180.02562 * 10 9 8 12 12 C 1.38316 * 120.02910 * 0.02562 * 10 9 8 13 13 C 1.50706 * 109.46903 * 119.99821 * 2 1 3 14 14 O 1.20825 * 119.99554 * 94.99991 * 13 2 1 15 15 O 1.34224 * 119.99844 * 274.99465 * 13 2 1 16 16 C 1.45205 * 116.99388 * 180.02562 * 15 13 2 17 17 C 1.53006 * 109.46897 * 179.97438 * 16 15 13 18 18 C 1.50699 * 109.47398 * 179.97438 * 17 16 15 19 19 H 1.08001 * 119.99413 * 0.02562 * 18 17 16 20 20 C 1.37871 * 120.00218 * 179.97438 * 18 17 16 21 21 N 1.31519 * 119.99826 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00183 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47010 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.47141 * 119.99884 * 22 20 18 25 25 H 1.48496 * 109.47349 * 240.00444 * 22 20 18 26 26 H 1.08997 * 109.47554 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46563 * 300.00372 * 1 2 3 28 28 H 1.08994 * 109.47124 * 59.99810 * 1 2 3 29 29 H 0.96699 * 113.99509 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.47545 * 294.99867 * 4 2 1 31 31 H 1.09004 * 109.46817 * 175.00313 * 4 2 1 32 32 H 1.07998 * 120.01148 * 0.26301 * 7 6 5 33 33 H 1.07999 * 119.94336 * 180.02562 * 8 7 6 34 34 H 1.08003 * 119.93231 * 179.97438 * 9 8 7 35 35 H 1.08003 * 120.05469 * 180.02562 * 12 10 9 36 36 H 1.08996 * 109.47394 * 299.99924 * 16 15 13 37 37 H 1.08998 * 109.47447 * 60.00669 * 16 15 13 38 38 H 1.08997 * 109.47409 * 300.00561 * 17 16 15 39 39 H 1.09006 * 109.46724 * 59.99960 * 17 16 15 40 40 H 0.97005 * 119.99774 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 2.0399 -0.7213 -1.2492 5 16 1.3167 0.0434 -2.7265 6 6 2.0069 -0.9044 -4.0418 7 6 2.8855 -1.9453 -3.7637 8 6 3.4289 -2.6836 -4.7962 9 6 3.1018 -2.3885 -6.1069 10 6 2.2273 -1.3520 -6.3890 11 9 1.9095 -1.0667 -7.6707 12 6 1.6794 -0.6090 -5.3591 13 6 2.0323 -0.7104 1.2305 14 8 2.3196 -1.8827 1.1762 15 8 2.1606 -0.0407 2.3867 16 6 2.6507 -0.7887 3.5307 17 6 2.7301 0.1351 4.7479 18 6 3.2381 -0.6412 5.9355 19 1 3.4805 -1.6886 5.8322 20 6 3.3944 -0.0142 7.1533 21 7 3.0996 1.2614 7.2788 22 14 4.0248 -0.9763 8.6252 23 1 4.2820 -2.3827 8.2239 24 1 5.2859 -0.3631 9.1142 25 1 3.0084 -0.9479 9.7074 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3632 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 2.9704 1.4235 -0.0004 30 1 1.7516 -1.7716 -1.2056 31 1 3.1263 -0.6445 -1.2951 32 1 3.1424 -2.1765 -2.7405 33 1 4.1111 -3.4924 -4.5796 34 1 3.5289 -2.9676 -6.9124 35 1 0.9971 0.1990 -5.5785 36 1 1.9708 -1.6135 3.7439 37 1 3.6424 -1.1831 3.3093 38 1 3.4101 0.9597 4.5345 39 1 1.7385 0.5299 4.9696 40 1 3.2093 1.7025 8.1358 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000803796870.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:43:22 Heat of formation + Delta-G solvation = -164.642381 kcal Electronic energy + Delta-G solvation = -24316.804507 eV Core-core repulsion = 20330.262586 eV Total energy + Delta-G solvation = -3986.541922 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.098 amu Computer time = 1.88 seconds Orbital eigenvalues (eV) -49.29809 -40.58810 -39.19236 -37.71654 -36.32688 -33.40537 -32.56848 -31.64526 -31.03618 -30.35973 -27.98300 -25.62868 -23.98216 -23.53161 -22.95691 -21.05655 -20.38846 -18.80831 -18.51056 -16.92569 -16.81682 -16.76282 -16.38306 -16.18881 -16.00131 -15.95689 -15.69745 -15.16512 -14.63040 -14.34879 -13.94473 -13.75418 -13.66302 -13.43752 -13.11358 -12.75230 -12.72194 -12.43182 -12.35528 -12.23176 -12.00995 -11.74227 -11.35021 -11.18612 -11.09783 -10.85118 -10.72794 -10.51811 -10.23708 -10.13176 -9.77588 -9.65467 -9.33613 -9.28295 -8.50144 -7.81457 -6.15518 -4.20526 0.58575 0.72086 0.89390 1.90191 2.18585 2.88457 3.05273 3.23648 3.31355 3.35668 3.79974 3.84637 4.05843 4.29813 4.29894 4.33494 4.53327 4.57993 4.83469 4.88515 5.00630 5.08604 5.12584 5.21037 5.48125 5.50062 5.51365 5.57328 5.68988 5.83654 5.90100 5.93778 5.96287 6.36270 6.52550 6.76101 7.18386 7.48166 7.54943 7.78241 7.97869 8.16965 8.85123 9.44279 10.95810 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.032003 B = 0.001999 C = 0.001922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.695715 B =14007.142879 C =14560.898725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.167 3.833 3 O -0.525 6.525 4 C -0.140 4.140 5 S -0.052 6.052 6 C -0.066 4.066 7 C -0.146 4.146 8 C -0.068 4.068 9 C -0.163 4.163 10 C 0.118 3.882 11 F -0.137 7.137 12 C -0.138 4.138 13 C 0.435 3.565 14 O -0.510 6.510 15 O -0.338 6.338 16 C 0.072 3.928 17 C 0.025 3.975 18 C -0.528 4.528 19 H 0.059 0.941 20 C 0.061 3.939 21 N -0.888 5.888 22 Si 0.900 3.100 23 H -0.272 1.272 24 H -0.282 1.282 25 H -0.282 1.282 26 H 0.082 0.918 27 H 0.085 0.915 28 H 0.088 0.912 29 H 0.386 0.614 30 H 0.115 0.885 31 H 0.099 0.901 32 H 0.132 0.868 33 H 0.137 0.863 34 H 0.137 0.863 35 H 0.141 0.859 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.029 0.971 39 H 0.029 0.971 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.361 -4.382 -26.278 26.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.123 3.877 3 O -0.331 6.331 4 C -0.288 4.288 5 S 0.195 5.805 6 C -0.179 4.179 7 C -0.170 4.170 8 C -0.088 4.088 9 C -0.185 4.185 10 C 0.097 3.903 11 F -0.115 7.115 12 C -0.163 4.163 13 C 0.275 3.725 14 O -0.400 6.400 15 O -0.253 6.253 16 C -0.001 4.001 17 C -0.012 4.012 18 C -0.566 4.566 19 H 0.078 0.922 20 C -0.142 4.142 21 N -0.526 5.526 22 Si 0.727 3.273 23 H -0.196 1.196 24 H -0.208 1.208 25 H -0.208 1.208 26 H 0.101 0.899 27 H 0.104 0.896 28 H 0.107 0.893 29 H 0.235 0.765 30 H 0.134 0.866 31 H 0.118 0.882 32 H 0.150 0.850 33 H 0.155 0.845 34 H 0.155 0.845 35 H 0.159 0.841 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.047 0.953 39 H 0.048 0.952 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.711 -3.446 -26.070 26.557 hybrid contribution 1.942 -1.855 0.710 2.778 sum -1.769 -5.301 -25.360 25.968 Atomic orbital electron populations 1.21885 0.89071 1.04070 1.05237 1.20634 0.97494 0.82661 0.86935 1.86675 1.27709 1.22378 1.96349 1.24428 1.04694 1.04899 0.94813 1.85742 1.58193 1.41938 0.94647 1.21811 0.99926 0.99101 0.97083 1.21335 0.98806 0.96409 1.00482 1.20954 0.97999 0.98511 0.91309 1.21178 1.00301 0.98658 0.98320 1.17516 0.97819 0.96587 0.78419 1.91518 1.91511 1.92934 1.35580 1.20638 1.03354 1.02122 0.90200 1.24177 0.75438 0.86421 0.86457 1.90649 1.46169 1.17261 1.85893 1.86611 1.75572 1.44510 1.18651 1.23759 0.97732 0.95951 0.82609 1.19179 0.98844 0.94817 0.88383 1.20994 1.45120 0.96571 0.93919 0.92230 1.24990 0.95230 0.94984 0.98967 1.69986 1.47759 1.09719 1.25158 0.86413 0.78572 0.80076 0.82237 1.19614 1.20797 1.20779 0.89921 0.89648 0.89342 0.76541 0.86625 0.88236 0.84976 0.84512 0.84492 0.84135 0.92141 0.92220 0.95256 0.95236 0.92691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 8.51 37.16 0.32 -1.25 16 2 C 0.17 1.98 1.04 -91.77 -0.10 1.88 16 3 O -0.53 -6.20 12.52 -49.12 -0.62 -6.82 16 4 C -0.14 -1.35 3.19 37.16 0.12 -1.24 16 5 S -0.05 -0.48 19.96 -107.50 -2.15 -2.63 16 6 C -0.07 -0.61 6.11 -39.04 -0.24 -0.84 16 7 C -0.15 -1.22 9.36 -39.35 -0.37 -1.59 16 8 C -0.07 -0.49 10.04 -39.63 -0.40 -0.88 16 9 C -0.16 -1.22 10.02 -39.46 -0.40 -1.61 16 10 C 0.12 1.04 7.30 -39.45 -0.29 0.75 16 11 F -0.14 -1.29 17.27 2.25 0.04 -1.25 16 12 C -0.14 -1.24 9.77 -39.30 -0.38 -1.62 16 13 C 0.44 6.89 6.80 36.01 0.24 7.13 16 14 O -0.51 -8.95 15.74 -18.75 -0.30 -9.25 16 15 O -0.34 -6.41 9.97 -44.41 -0.44 -6.85 16 16 C 0.07 1.53 5.41 37.16 0.20 1.73 16 17 C 0.02 0.64 5.35 -27.88 -0.15 0.49 16 18 C -0.53 -14.56 9.11 -34.44 -0.31 -14.88 16 19 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 20 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 21 N -0.89 -25.97 13.29 55.43 0.74 -25.24 16 22 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 23 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 25 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 26 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.09 0.85 6.72 -51.93 -0.35 0.50 16 29 H 0.39 3.41 9.04 45.56 0.41 3.83 16 30 H 0.12 1.13 7.30 -51.92 -0.38 0.75 16 31 H 0.10 0.87 7.74 -51.92 -0.40 0.47 16 32 H 0.13 1.02 5.88 -52.49 -0.31 0.71 16 33 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16 34 H 0.14 0.75 8.06 -52.48 -0.42 0.32 16 35 H 0.14 1.12 8.06 -52.48 -0.42 0.69 16 36 H 0.06 1.28 8.13 -51.93 -0.42 0.86 16 37 H 0.06 1.25 8.13 -51.93 -0.42 0.82 16 38 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 362.80 15.07 5.47 5.47 Total: -1.00 -31.49 362.80 -8.50 -39.99 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: -4.37 Total: 0.85 kcal Atomic # 6 Polarization: -8.48 SS G_CDS: -1.85 Total: -10.32 kcal Atomic # 7 Polarization: -25.97 SS G_CDS: 0.74 Total: -25.24 kcal Atomic # 8 Polarization: -21.57 SS G_CDS: -1.35 Total: -22.92 kcal Atomic # 9 Polarization: -1.29 SS G_CDS: 0.04 Total: -1.25 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: -0.48 SS G_CDS: -2.15 Total: -2.63 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.49 -8.50 -39.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000803796870.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.652 kcal (2) G-P(sol) polarization free energy of solvation -31.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.89 seconds