Wall clock time and date at job start Tue Mar 31 2020 16:43:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42901 * 109.47376 * 2 1 4 4 C 1.52998 * 109.46671 * 239.99690 * 2 1 3 5 5 S 1.81393 * 109.47169 * 55.00494 * 4 2 1 6 6 C 1.76200 * 103.00116 * 180.02562 * 5 4 2 7 7 C 1.39018 * 120.06562 * 359.71648 * 6 5 4 8 8 C 1.38073 * 119.96869 * 180.23380 * 7 6 5 9 9 C 1.38283 * 120.10560 * 0.06806 * 8 7 6 10 10 C 1.38516 * 120.13543 * 359.95694 * 9 8 7 11 11 F 1.35098 * 119.98293 * 180.02562 * 10 9 8 12 12 C 1.38316 * 120.02910 * 0.02562 * 10 9 8 13 13 C 1.50706 * 109.46903 * 119.99821 * 2 1 3 14 14 O 1.20825 * 119.99554 * 94.99991 * 13 2 1 15 15 O 1.34224 * 119.99844 * 274.99465 * 13 2 1 16 16 C 1.45205 * 116.99388 * 180.02562 * 15 13 2 17 17 C 1.53006 * 109.46897 * 179.97438 * 16 15 13 18 18 C 1.50699 * 109.47398 * 179.97438 * 17 16 15 19 19 H 1.08001 * 119.99413 * 0.02562 * 18 17 16 20 20 C 1.37871 * 120.00218 * 179.97438 * 18 17 16 21 21 N 1.31519 * 119.99826 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00183 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47010 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.47141 * 119.99884 * 22 20 18 25 25 H 1.48496 * 109.47349 * 240.00444 * 22 20 18 26 26 H 1.08997 * 109.47554 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46563 * 300.00372 * 1 2 3 28 28 H 1.08994 * 109.47124 * 59.99810 * 1 2 3 29 29 H 0.96699 * 113.99509 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.47545 * 294.99867 * 4 2 1 31 31 H 1.09004 * 109.46817 * 175.00313 * 4 2 1 32 32 H 1.07998 * 120.01148 * 0.26301 * 7 6 5 33 33 H 1.07999 * 119.94336 * 180.02562 * 8 7 6 34 34 H 1.08003 * 119.93231 * 179.97438 * 9 8 7 35 35 H 1.08003 * 120.05469 * 180.02562 * 12 10 9 36 36 H 1.08996 * 109.47394 * 299.99924 * 16 15 13 37 37 H 1.08998 * 109.47447 * 60.00669 * 16 15 13 38 38 H 1.08997 * 109.47409 * 300.00561 * 17 16 15 39 39 H 1.09006 * 109.46724 * 59.99960 * 17 16 15 40 40 H 0.97005 * 119.99774 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 2.0399 -0.7213 -1.2492 5 16 1.3167 0.0434 -2.7265 6 6 2.0069 -0.9044 -4.0418 7 6 2.8855 -1.9453 -3.7637 8 6 3.4289 -2.6836 -4.7962 9 6 3.1018 -2.3885 -6.1069 10 6 2.2273 -1.3520 -6.3890 11 9 1.9095 -1.0667 -7.6707 12 6 1.6794 -0.6090 -5.3591 13 6 2.0323 -0.7104 1.2305 14 8 2.3196 -1.8827 1.1762 15 8 2.1606 -0.0407 2.3867 16 6 2.6507 -0.7887 3.5307 17 6 2.7301 0.1351 4.7479 18 6 3.2381 -0.6412 5.9355 19 1 3.4805 -1.6886 5.8322 20 6 3.3944 -0.0142 7.1533 21 7 3.0996 1.2614 7.2788 22 14 4.0248 -0.9763 8.6252 23 1 4.2820 -2.3827 8.2239 24 1 5.2859 -0.3631 9.1142 25 1 3.0084 -0.9479 9.7074 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3632 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 2.9704 1.4235 -0.0004 30 1 1.7516 -1.7716 -1.2056 31 1 3.1263 -0.6445 -1.2951 32 1 3.1424 -2.1765 -2.7405 33 1 4.1111 -3.4924 -4.5796 34 1 3.5289 -2.9676 -6.9124 35 1 0.9971 0.1990 -5.5785 36 1 1.9708 -1.6135 3.7439 37 1 3.6424 -1.1831 3.3093 38 1 3.4101 0.9597 4.5345 39 1 1.7385 0.5299 4.9696 40 1 3.2093 1.7025 8.1358 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000803796870.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:43:19 Heat of formation + Delta-G solvation = -182.258161 kcal Electronic energy + Delta-G solvation = -24317.568385 eV Core-core repulsion = 20330.262586 eV Total energy + Delta-G solvation = -3987.305799 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.098 amu Computer time = 2.06 seconds Orbital eigenvalues (eV) -49.97877 -41.89664 -39.79809 -38.83431 -37.74392 -35.46312 -33.49322 -32.35158 -32.24644 -31.65636 -28.80235 -27.41097 -25.31331 -24.22838 -23.63692 -22.89622 -21.54434 -19.86701 -19.33055 -18.56469 -17.88439 -17.77745 -17.47056 -17.44519 -16.86733 -16.68436 -16.53794 -16.48060 -16.20111 -15.22862 -15.03931 -14.85583 -14.53727 -14.38950 -14.25490 -14.14351 -13.66097 -13.50260 -13.46051 -13.17661 -13.07215 -12.95405 -12.78065 -12.64556 -12.55963 -12.43881 -12.11359 -11.79868 -11.53108 -11.48058 -11.23923 -11.07231 -10.83669 -10.63295 -9.91864 -8.50459 -8.28186 -6.41659 -0.03827 0.10438 0.12928 0.89872 1.17984 1.40552 1.41077 1.53894 1.64387 2.38486 2.44324 2.91817 3.06343 3.16010 3.22144 3.43137 3.52556 3.72527 3.95316 4.00678 4.13996 4.18879 4.20079 4.28947 4.35088 4.51846 4.62816 4.63971 4.67638 4.93168 4.95767 5.04580 5.10971 5.20597 5.25542 5.44501 5.46027 5.71379 5.76749 6.04126 6.32329 6.62411 6.72700 7.28423 8.84428 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.032003 B = 0.001999 C = 0.001922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.695715 B =14007.142879 C =14560.898725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.177 3.823 3 O -0.534 6.534 4 C -0.134 4.134 5 S -0.051 6.051 6 C -0.079 4.079 7 C -0.153 4.153 8 C -0.067 4.067 9 C -0.160 4.160 10 C 0.102 3.898 11 F -0.144 7.144 12 C -0.147 4.147 13 C 0.436 3.564 14 O -0.525 6.525 15 O -0.351 6.351 16 C 0.088 3.912 17 C 0.030 3.970 18 C -0.549 4.549 19 H 0.066 0.934 20 C 0.005 3.995 21 N -0.926 5.926 22 Si 0.973 3.027 23 H -0.261 1.261 24 H -0.276 1.276 25 H -0.276 1.276 26 H 0.093 0.907 27 H 0.073 0.927 28 H 0.102 0.898 29 H 0.398 0.602 30 H 0.117 0.883 31 H 0.110 0.890 32 H 0.138 0.862 33 H 0.163 0.837 34 H 0.158 0.842 35 H 0.144 0.856 36 H 0.061 0.939 37 H 0.064 0.936 38 H 0.007 0.993 39 H 0.005 0.995 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.686 -5.853 -27.030 27.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.133 3.867 3 O -0.342 6.342 4 C -0.282 4.282 5 S 0.195 5.805 6 C -0.192 4.192 7 C -0.177 4.177 8 C -0.086 4.086 9 C -0.181 4.181 10 C 0.081 3.919 11 F -0.122 7.122 12 C -0.172 4.172 13 C 0.277 3.723 14 O -0.415 6.415 15 O -0.267 6.267 16 C 0.015 3.985 17 C -0.007 4.007 18 C -0.587 4.587 19 H 0.084 0.916 20 C -0.194 4.194 21 N -0.565 5.565 22 Si 0.797 3.203 23 H -0.185 1.185 24 H -0.201 1.201 25 H -0.202 1.202 26 H 0.112 0.888 27 H 0.092 0.908 28 H 0.120 0.880 29 H 0.249 0.751 30 H 0.135 0.865 31 H 0.128 0.872 32 H 0.156 0.844 33 H 0.181 0.819 34 H 0.176 0.824 35 H 0.162 0.838 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.025 0.975 39 H 0.023 0.977 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.030 -4.924 -26.853 27.468 hybrid contribution 1.724 -1.380 0.825 2.357 sum -1.307 -6.304 -26.028 26.813 Atomic orbital electron populations 1.21964 0.88251 1.04900 1.05375 1.20658 0.97984 0.82460 0.85628 1.86665 1.29050 1.22273 1.96175 1.24316 1.05355 1.04573 0.93952 1.85712 1.58384 1.42035 0.94408 1.21851 1.00705 0.99715 0.96887 1.21530 0.98624 0.96278 1.01235 1.21277 0.97834 0.98726 0.90770 1.21473 0.99388 0.98019 0.99214 1.17718 0.98640 0.97381 0.78134 1.91499 1.91685 1.93086 1.35975 1.20734 1.03651 1.02457 0.90359 1.25045 0.74504 0.86439 0.86284 1.90637 1.46773 1.18071 1.85980 1.86598 1.76038 1.44787 1.19228 1.23242 0.98178 0.94685 0.82432 1.18981 0.96644 0.94797 0.90279 1.21396 1.45260 0.97097 0.94918 0.91577 1.25975 0.95238 0.95973 1.02225 1.70107 1.48736 1.11471 1.26209 0.85274 0.78034 0.78883 0.78101 1.18510 1.20107 1.20162 0.88823 0.90752 0.87956 0.75130 0.86463 0.87191 0.84402 0.81911 0.82428 0.83844 0.92019 0.91744 0.97462 0.97697 0.92347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.02 8.51 71.98 0.61 -2.41 16 2 C 0.18 4.00 1.04 -11.54 -0.01 3.98 16 3 O -0.53 -12.08 12.52 -135.70 -1.70 -13.78 16 4 C -0.13 -2.37 3.19 71.98 0.23 -2.14 16 5 S -0.05 -0.88 19.96 -56.49 -1.13 -2.01 16 6 C -0.08 -1.34 6.11 22.62 0.14 -1.20 16 7 C -0.15 -2.26 9.36 22.42 0.21 -2.05 16 8 C -0.07 -0.79 10.04 22.24 0.22 -0.56 16 9 C -0.16 -2.05 10.02 22.35 0.22 -1.82 16 10 C 0.10 1.69 7.30 22.35 0.16 1.86 16 11 F -0.14 -2.61 17.27 44.97 0.78 -1.83 16 12 C -0.15 -2.51 9.77 22.45 0.22 -2.29 16 13 C 0.44 13.49 6.80 71.24 0.48 13.98 16 14 O -0.52 -17.88 15.74 21.97 0.35 -17.54 16 15 O -0.35 -13.34 9.97 -46.42 -0.46 -13.80 16 16 C 0.09 3.77 5.41 71.98 0.39 4.16 16 17 C 0.03 1.59 5.35 29.85 0.16 1.75 16 18 C -0.55 -30.53 9.11 25.60 0.23 -30.30 16 19 H 0.07 3.50 7.74 -2.91 -0.02 3.48 16 20 C 0.00 0.28 5.46 84.65 0.46 0.74 16 21 N -0.93 -54.95 13.29 21.45 0.28 -54.66 16 22 Si 0.97 42.96 29.54 68.60 2.03 44.99 16 23 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 24 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 25 H -0.28 -11.86 7.11 99.48 0.71 -11.16 16 26 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 27 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.10 1.82 6.72 -2.39 -0.02 1.80 16 29 H 0.40 6.63 9.04 -74.06 -0.67 5.96 16 30 H 0.12 2.08 7.30 -2.39 -0.02 2.06 16 31 H 0.11 1.72 7.74 -2.39 -0.02 1.70 16 32 H 0.14 1.84 5.88 -2.91 -0.02 1.82 16 33 H 0.16 1.03 8.06 -2.91 -0.02 1.01 16 34 H 0.16 1.30 8.06 -2.91 -0.02 1.27 16 35 H 0.14 2.22 8.06 -2.91 -0.02 2.20 16 36 H 0.06 2.61 8.13 -2.39 -0.02 2.59 16 37 H 0.06 2.68 8.13 -2.39 -0.02 2.66 16 38 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 39 H 0.00 0.26 8.14 -2.38 -0.02 0.24 16 40 H 0.27 14.78 8.31 -92.70 -0.77 14.01 16 Total: -1.00 -67.25 362.80 4.28 -62.97 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: 0.40 Total: 11.99 kcal Atomic # 6 Polarization: -20.06 SS G_CDS: 3.74 Total: -16.32 kcal Atomic # 7 Polarization: -54.95 SS G_CDS: 0.28 Total: -54.66 kcal Atomic # 8 Polarization: -43.30 SS G_CDS: -1.82 Total: -45.12 kcal Atomic # 9 Polarization: -2.61 SS G_CDS: 0.78 Total: -1.83 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Atomic # 16 Polarization: -0.88 SS G_CDS: -1.13 Total: -2.01 kcal Total: -67.25 4.28 -62.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000803796870.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.292 kcal (2) G-P(sol) polarization free energy of solvation -67.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.07 seconds