Wall clock time and date at job start Tue Mar 31 2020 16:43:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.46728 * 2 1 4 4 C 1.52997 * 109.47269 * 119.99603 * 2 1 3 5 5 S 1.81406 * 109.46873 * 305.00423 * 4 2 1 6 6 C 1.76207 * 102.99534 * 179.97438 * 5 4 2 7 7 C 1.39003 * 120.07031 * 359.72298 * 6 5 4 8 8 C 1.38074 * 119.96919 * 179.76870 * 7 6 5 9 9 C 1.38283 * 120.10719 * 0.50728 * 8 7 6 10 10 C 1.38516 * 120.13382 * 359.75056 * 9 8 7 11 11 F 1.35100 * 119.98653 * 180.02562 * 10 9 8 12 12 C 1.38328 * 120.02451 * 359.97438 * 10 9 8 13 13 C 1.50698 * 109.47150 * 239.99980 * 2 1 3 14 14 O 1.20824 * 119.99669 * 264.98937 * 13 2 1 15 15 O 1.34228 * 120.00161 * 84.99932 * 13 2 1 16 16 C 1.45200 * 117.00041 * 179.97438 * 15 13 2 17 17 C 1.52994 * 109.46991 * 179.97438 * 16 15 13 18 18 C 1.50711 * 109.46977 * 180.02562 * 17 16 15 19 19 H 1.07997 * 119.99512 * 0.02562 * 18 17 16 20 20 C 1.37880 * 119.99802 * 180.02562 * 18 17 16 21 21 N 1.31514 * 120.00200 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 119.99585 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47234 * 60.00267 * 22 20 18 24 24 H 1.48505 * 109.46842 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47315 * 299.99973 * 22 20 18 26 26 H 1.09001 * 109.47362 * 60.00784 * 1 2 3 27 27 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47486 * 300.00062 * 1 2 3 29 29 H 0.96696 * 114.00036 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47278 * 65.00057 * 4 2 1 31 31 H 1.08994 * 109.47510 * 185.00566 * 4 2 1 32 32 H 1.08000 * 120.01500 * 359.97438 * 7 6 5 33 33 H 1.08004 * 119.94623 * 180.23318 * 8 7 6 34 34 H 1.07992 * 119.93659 * 179.76574 * 9 8 7 35 35 H 1.08001 * 120.04882 * 180.02562 * 12 10 9 36 36 H 1.09000 * 109.47257 * 300.00538 * 16 15 13 37 37 H 1.09003 * 109.46543 * 60.00113 * 16 15 13 38 38 H 1.09000 * 109.47709 * 300.00444 * 17 16 15 39 39 H 1.09003 * 109.47236 * 60.00720 * 17 16 15 40 40 H 0.96992 * 120.00046 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 2.0400 -0.7211 1.2493 5 16 1.3166 0.0437 2.7266 6 6 2.0071 -0.9040 4.0419 7 6 2.8766 -1.9521 3.7633 8 6 3.4202 -2.6902 4.7958 9 6 3.0929 -2.3954 6.1066 10 6 2.2226 -1.3554 6.3889 11 9 1.9053 -1.0696 7.6706 12 6 1.6793 -0.6086 5.3591 13 6 2.0323 -0.7104 -1.2304 14 8 2.3198 -1.8827 -1.1761 15 8 2.1605 -0.0408 -2.3867 16 6 2.6507 -0.7887 -3.5307 17 6 2.7287 0.1346 -4.7481 18 6 3.2368 -0.6418 -5.9357 19 1 3.4794 -1.6891 -5.8324 20 6 3.3920 -0.0150 -7.1539 21 7 3.0972 1.2605 -7.2795 22 14 4.0225 -0.9772 -8.6256 23 1 3.0964 -2.1011 -8.9159 24 1 4.0994 -0.0807 -9.8071 25 1 5.3736 -1.5145 -8.3239 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 2.9702 1.4238 0.0004 30 1 1.7517 -1.7714 1.2057 31 1 3.1263 -0.6442 1.2952 32 1 3.1295 -2.1867 2.7399 33 1 4.0988 -3.5021 4.5791 34 1 3.5167 -2.9769 6.9118 35 1 1.0010 0.2026 5.5788 36 1 3.6423 -1.1832 -3.3091 37 1 1.9707 -1.6136 -3.7437 38 1 1.7369 0.5287 -4.9695 39 1 3.4084 0.9598 -4.5354 40 1 3.2067 1.7015 -8.1364 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000803796874.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:43:30 Heat of formation + Delta-G solvation = -164.543941 kcal Electronic energy + Delta-G solvation = -24316.567547 eV Core-core repulsion = 20330.029894 eV Total energy + Delta-G solvation = -3986.537653 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.098 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.29744 -40.58784 -39.19288 -37.71606 -36.32645 -33.40180 -32.56842 -31.64553 -31.03577 -30.35855 -27.98274 -25.62604 -23.98073 -23.53083 -22.95683 -21.05320 -20.38793 -18.80798 -18.51035 -16.92474 -16.81688 -16.76153 -16.38235 -16.18607 -16.00095 -15.95374 -15.69740 -15.16435 -14.63529 -14.34898 -13.94560 -13.75400 -13.66407 -13.43537 -13.11371 -12.75224 -12.72105 -12.42070 -12.35246 -12.22970 -12.00983 -11.74216 -11.34185 -11.18732 -11.11374 -10.81717 -10.74457 -10.51799 -10.23764 -10.13949 -9.77014 -9.64886 -9.36342 -9.28268 -8.49167 -7.81479 -6.14884 -4.20117 0.58610 0.72061 0.89408 1.90165 2.18601 2.88477 3.05278 3.26307 3.30875 3.33599 3.80006 3.84607 4.05864 4.29819 4.30004 4.33735 4.53356 4.57994 4.83533 4.88505 5.00642 5.08620 5.12609 5.21401 5.48072 5.50129 5.51366 5.57343 5.69001 5.83666 5.90117 5.93860 5.96311 6.36271 6.52662 6.76192 7.18455 7.48000 7.55214 7.78316 7.98019 8.17215 8.85007 9.44495 10.96358 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.032025 B = 0.001998 C = 0.001922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.098456 B =14008.129391 C =14562.322359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.167 3.833 3 O -0.525 6.525 4 C -0.140 4.140 5 S -0.052 6.052 6 C -0.066 4.066 7 C -0.146 4.146 8 C -0.068 4.068 9 C -0.163 4.163 10 C 0.118 3.882 11 F -0.137 7.137 12 C -0.138 4.138 13 C 0.435 3.565 14 O -0.510 6.510 15 O -0.338 6.338 16 C 0.072 3.928 17 C 0.026 3.974 18 C -0.529 4.529 19 H 0.058 0.942 20 C 0.061 3.939 21 N -0.888 5.888 22 Si 0.900 3.100 23 H -0.275 1.275 24 H -0.285 1.285 25 H -0.275 1.275 26 H 0.085 0.915 27 H 0.082 0.918 28 H 0.088 0.912 29 H 0.386 0.614 30 H 0.115 0.885 31 H 0.099 0.901 32 H 0.132 0.868 33 H 0.137 0.863 34 H 0.137 0.863 35 H 0.141 0.859 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.029 0.971 39 H 0.029 0.971 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.367 -4.368 26.256 26.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.123 3.877 3 O -0.331 6.331 4 C -0.288 4.288 5 S 0.195 5.805 6 C -0.179 4.179 7 C -0.170 4.170 8 C -0.088 4.088 9 C -0.185 4.185 10 C 0.097 3.903 11 F -0.115 7.115 12 C -0.163 4.163 13 C 0.275 3.725 14 O -0.400 6.400 15 O -0.253 6.253 16 C 0.000 4.000 17 C -0.012 4.012 18 C -0.568 4.568 19 H 0.077 0.923 20 C -0.141 4.141 21 N -0.526 5.526 22 Si 0.728 3.272 23 H -0.201 1.201 24 H -0.211 1.211 25 H -0.201 1.201 26 H 0.104 0.896 27 H 0.101 0.899 28 H 0.107 0.893 29 H 0.235 0.765 30 H 0.134 0.866 31 H 0.118 0.882 32 H 0.150 0.850 33 H 0.155 0.845 34 H 0.155 0.845 35 H 0.159 0.841 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.048 0.952 39 H 0.047 0.953 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.718 -3.424 26.043 26.529 hybrid contribution 1.946 -1.878 -0.700 2.794 sum -1.772 -5.302 25.343 25.953 Atomic orbital electron populations 1.21885 0.89071 1.04069 1.05236 1.20633 0.97493 0.82661 0.86936 1.86675 1.27713 1.22375 1.96350 1.24428 1.04694 1.04894 0.94809 1.85746 1.58115 1.42029 0.94647 1.21807 0.99975 0.99052 0.97080 1.21332 0.98919 0.96300 1.00479 1.20955 0.97956 0.98555 0.91308 1.21176 1.00329 0.98625 0.98323 1.17520 0.97855 0.96550 0.78420 1.91519 1.91509 1.92937 1.35577 1.20640 1.03361 1.02105 0.90207 1.24176 0.75438 0.86420 0.86456 1.90649 1.46168 1.17266 1.85893 1.86610 1.75571 1.44517 1.18648 1.23759 0.97725 0.95956 0.82609 1.19168 0.98829 0.94808 0.88349 1.20919 1.45375 0.96525 0.93935 0.92340 1.24986 0.95208 0.94987 0.98941 1.69958 1.47598 1.09712 1.25352 0.86522 0.79469 0.79693 0.81550 1.20056 1.21069 1.20074 0.89641 0.89923 0.89347 0.76542 0.86628 0.88234 0.84974 0.84511 0.84493 0.84135 0.92218 0.92154 0.95245 0.95266 0.92574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 8.51 37.16 0.32 -1.25 16 2 C 0.17 1.98 1.04 -91.77 -0.10 1.88 16 3 O -0.53 -6.20 12.52 -49.11 -0.62 -6.82 16 4 C -0.14 -1.35 3.19 37.16 0.12 -1.23 16 5 S -0.05 -0.48 19.96 -107.50 -2.15 -2.63 16 6 C -0.07 -0.60 6.11 -39.05 -0.24 -0.84 16 7 C -0.15 -1.22 9.36 -39.36 -0.37 -1.59 16 8 C -0.07 -0.49 10.04 -39.62 -0.40 -0.88 16 9 C -0.16 -1.22 10.02 -39.46 -0.40 -1.61 16 10 C 0.12 1.04 7.30 -39.45 -0.29 0.75 16 11 F -0.14 -1.29 17.27 2.25 0.04 -1.25 16 12 C -0.14 -1.24 9.77 -39.30 -0.38 -1.62 16 13 C 0.44 6.89 6.80 36.00 0.24 7.13 16 14 O -0.51 -8.96 15.74 -18.75 -0.30 -9.25 16 15 O -0.34 -6.41 9.97 -44.42 -0.44 -6.86 16 16 C 0.07 1.53 5.40 37.15 0.20 1.74 16 17 C 0.03 0.65 5.35 -27.88 -0.15 0.51 16 18 C -0.53 -14.60 9.11 -34.43 -0.31 -14.92 16 19 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 20 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 21 N -0.89 -25.97 13.29 55.43 0.74 -25.24 16 22 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 16 23 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 24 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 25 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 26 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.09 0.85 6.72 -51.93 -0.35 0.50 16 29 H 0.39 3.42 9.04 45.56 0.41 3.83 16 30 H 0.12 1.13 7.28 -51.92 -0.38 0.75 16 31 H 0.10 0.87 7.76 -51.93 -0.40 0.47 16 32 H 0.13 1.02 5.88 -52.49 -0.31 0.71 16 33 H 0.14 0.66 8.06 -52.48 -0.42 0.24 16 34 H 0.14 0.75 8.06 -52.49 -0.42 0.32 16 35 H 0.14 1.12 8.06 -52.49 -0.42 0.69 16 36 H 0.06 1.25 8.13 -51.93 -0.42 0.82 16 37 H 0.06 1.28 8.13 -51.93 -0.42 0.85 16 38 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 362.80 15.07 5.47 5.47 Total: -1.00 -31.43 362.80 -8.50 -39.93 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -4.37 Total: 0.92 kcal Atomic # 6 Polarization: -8.48 SS G_CDS: -1.85 Total: -10.33 kcal Atomic # 7 Polarization: -25.97 SS G_CDS: 0.74 Total: -25.24 kcal Atomic # 8 Polarization: -21.57 SS G_CDS: -1.35 Total: -22.93 kcal Atomic # 9 Polarization: -1.29 SS G_CDS: 0.04 Total: -1.25 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: -0.48 SS G_CDS: -2.15 Total: -2.63 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.43 -8.50 -39.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000803796874.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.617 kcal (2) G-P(sol) polarization free energy of solvation -31.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds