Wall clock time and date at job start Tue Mar 31 2020 16:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.46728 * 2 1 4 4 C 1.52997 * 109.47269 * 119.99603 * 2 1 3 5 5 S 1.81406 * 109.46873 * 305.00423 * 4 2 1 6 6 C 1.76207 * 102.99534 * 179.97438 * 5 4 2 7 7 C 1.39003 * 120.07031 * 359.72298 * 6 5 4 8 8 C 1.38074 * 119.96919 * 179.76870 * 7 6 5 9 9 C 1.38283 * 120.10719 * 0.50728 * 8 7 6 10 10 C 1.38516 * 120.13382 * 359.75056 * 9 8 7 11 11 F 1.35100 * 119.98653 * 180.02562 * 10 9 8 12 12 C 1.38328 * 120.02451 * 359.97438 * 10 9 8 13 13 C 1.50698 * 109.47150 * 239.99980 * 2 1 3 14 14 O 1.20824 * 119.99669 * 264.98937 * 13 2 1 15 15 O 1.34228 * 120.00161 * 84.99932 * 13 2 1 16 16 C 1.45200 * 117.00041 * 179.97438 * 15 13 2 17 17 C 1.52994 * 109.46991 * 179.97438 * 16 15 13 18 18 C 1.50711 * 109.46977 * 180.02562 * 17 16 15 19 19 H 1.07997 * 119.99512 * 0.02562 * 18 17 16 20 20 C 1.37880 * 119.99802 * 180.02562 * 18 17 16 21 21 N 1.31514 * 120.00200 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 119.99585 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47234 * 60.00267 * 22 20 18 24 24 H 1.48505 * 109.46842 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47315 * 299.99973 * 22 20 18 26 26 H 1.09001 * 109.47362 * 60.00784 * 1 2 3 27 27 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47486 * 300.00062 * 1 2 3 29 29 H 0.96696 * 114.00036 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47278 * 65.00057 * 4 2 1 31 31 H 1.08994 * 109.47510 * 185.00566 * 4 2 1 32 32 H 1.08000 * 120.01500 * 359.97438 * 7 6 5 33 33 H 1.08004 * 119.94623 * 180.23318 * 8 7 6 34 34 H 1.07992 * 119.93659 * 179.76574 * 9 8 7 35 35 H 1.08001 * 120.04882 * 180.02562 * 12 10 9 36 36 H 1.09000 * 109.47257 * 300.00538 * 16 15 13 37 37 H 1.09003 * 109.46543 * 60.00113 * 16 15 13 38 38 H 1.09000 * 109.47709 * 300.00444 * 17 16 15 39 39 H 1.09003 * 109.47236 * 60.00720 * 17 16 15 40 40 H 0.96992 * 120.00046 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 2.0400 -0.7211 1.2493 5 16 1.3166 0.0437 2.7266 6 6 2.0071 -0.9040 4.0419 7 6 2.8766 -1.9521 3.7633 8 6 3.4202 -2.6902 4.7958 9 6 3.0929 -2.3954 6.1066 10 6 2.2226 -1.3554 6.3889 11 9 1.9053 -1.0696 7.6706 12 6 1.6793 -0.6086 5.3591 13 6 2.0323 -0.7104 -1.2304 14 8 2.3198 -1.8827 -1.1761 15 8 2.1605 -0.0408 -2.3867 16 6 2.6507 -0.7887 -3.5307 17 6 2.7287 0.1346 -4.7481 18 6 3.2368 -0.6418 -5.9357 19 1 3.4794 -1.6891 -5.8324 20 6 3.3920 -0.0150 -7.1539 21 7 3.0972 1.2605 -7.2795 22 14 4.0225 -0.9772 -8.6256 23 1 3.0964 -2.1011 -8.9159 24 1 4.0994 -0.0807 -9.8071 25 1 5.3736 -1.5145 -8.3239 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 2.9702 1.4238 0.0004 30 1 1.7517 -1.7714 1.2057 31 1 3.1263 -0.6442 1.2952 32 1 3.1295 -2.1867 2.7399 33 1 4.0988 -3.5021 4.5791 34 1 3.5167 -2.9769 6.9118 35 1 1.0010 0.2026 5.5788 36 1 3.6423 -1.1832 -3.3091 37 1 1.9707 -1.6136 -3.7437 38 1 1.7369 0.5287 -4.9695 39 1 3.4084 0.9598 -4.5354 40 1 3.2067 1.7015 -8.1364 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000803796874.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:43:29 Heat of formation + Delta-G solvation = -182.105835 kcal Electronic energy + Delta-G solvation = -24317.329088 eV Core-core repulsion = 20330.029894 eV Total energy + Delta-G solvation = -3987.299194 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.098 amu Computer time = 2.25 seconds Orbital eigenvalues (eV) -49.97827 -41.89667 -39.79879 -38.83429 -37.74372 -35.45895 -33.49355 -32.35022 -32.24686 -31.65611 -28.80241 -27.40677 -25.31198 -24.22803 -23.63700 -22.89338 -21.54424 -19.86689 -19.33043 -18.55846 -17.88104 -17.77730 -17.47061 -17.44442 -16.86727 -16.68435 -16.54209 -16.48172 -16.20047 -15.22889 -15.03980 -14.85486 -14.53240 -14.37697 -14.25373 -14.14446 -13.66170 -13.50211 -13.46108 -13.16470 -13.07549 -12.96417 -12.78278 -12.60640 -12.56994 -12.43824 -12.11525 -11.80328 -11.52563 -11.51095 -11.24013 -11.07452 -10.83726 -10.61766 -9.91848 -8.50513 -8.27480 -6.41206 -0.03807 0.10413 0.12903 0.89854 1.17934 1.40626 1.44211 1.51787 1.64236 2.38926 2.44315 2.91806 3.06811 3.15996 3.22099 3.43176 3.52579 3.72537 3.95304 4.00682 4.13987 4.19011 4.20039 4.28932 4.35090 4.51845 4.62752 4.64002 4.67653 4.93158 4.95760 5.04534 5.10965 5.20588 5.25539 5.44673 5.45941 5.71411 5.76735 6.04350 6.32341 6.62411 6.72642 7.28703 8.84671 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.032025 B = 0.001998 C = 0.001922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.098456 B =14008.129391 C =14562.322359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.177 3.823 3 O -0.534 6.534 4 C -0.133 4.133 5 S -0.052 6.052 6 C -0.078 4.078 7 C -0.153 4.153 8 C -0.067 4.067 9 C -0.160 4.160 10 C 0.102 3.898 11 F -0.144 7.144 12 C -0.147 4.147 13 C 0.436 3.564 14 O -0.525 6.525 15 O -0.351 6.351 16 C 0.088 3.912 17 C 0.031 3.969 18 C -0.551 4.551 19 H 0.066 0.934 20 C 0.005 3.995 21 N -0.926 5.926 22 Si 0.973 3.027 23 H -0.266 1.266 24 H -0.281 1.281 25 H -0.265 1.265 26 H 0.073 0.927 27 H 0.093 0.907 28 H 0.102 0.898 29 H 0.398 0.602 30 H 0.117 0.883 31 H 0.110 0.890 32 H 0.138 0.862 33 H 0.163 0.837 34 H 0.158 0.842 35 H 0.144 0.856 36 H 0.064 0.936 37 H 0.061 0.939 38 H 0.004 0.996 39 H 0.007 0.993 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.687 -5.870 27.015 27.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.133 3.867 3 O -0.342 6.342 4 C -0.282 4.282 5 S 0.194 5.806 6 C -0.191 4.191 7 C -0.177 4.177 8 C -0.086 4.086 9 C -0.181 4.181 10 C 0.081 3.919 11 F -0.122 7.122 12 C -0.172 4.172 13 C 0.277 3.723 14 O -0.415 6.415 15 O -0.267 6.267 16 C 0.015 3.985 17 C -0.006 4.006 18 C -0.589 4.589 19 H 0.084 0.916 20 C -0.194 4.194 21 N -0.565 5.565 22 Si 0.797 3.203 23 H -0.191 1.191 24 H -0.206 1.206 25 H -0.190 1.190 26 H 0.093 0.907 27 H 0.112 0.888 28 H 0.120 0.880 29 H 0.249 0.751 30 H 0.135 0.865 31 H 0.128 0.872 32 H 0.156 0.844 33 H 0.181 0.819 34 H 0.176 0.824 35 H 0.162 0.838 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.023 0.977 39 H 0.025 0.975 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.033 -4.933 26.834 27.452 hybrid contribution 1.726 -1.396 -0.815 2.364 sum -1.307 -6.329 26.019 26.810 Atomic orbital electron populations 1.21965 0.88252 1.04901 1.05373 1.20657 0.97983 0.82460 0.85631 1.86665 1.29054 1.22272 1.96176 1.24315 1.05350 1.04572 0.93947 1.85717 1.58305 1.42129 0.94410 1.21846 1.00756 0.99664 0.96883 1.21527 0.98740 0.96166 1.01231 1.21278 0.97781 0.98779 0.90769 1.21471 0.99411 0.97991 0.99215 1.17721 0.98677 0.97344 0.78135 1.91500 1.91683 1.93089 1.35972 1.20736 1.03657 1.02440 0.90366 1.25043 0.74506 0.86438 0.86282 1.90636 1.46768 1.18073 1.85979 1.86597 1.76037 1.44797 1.19229 1.23241 0.98175 0.94688 0.82427 1.18972 0.96622 0.94792 0.90264 1.21341 1.45491 0.97121 0.94919 0.91561 1.25975 0.95211 0.95974 1.02212 1.70088 1.48604 1.11472 1.26312 0.85381 0.79233 0.78287 0.77445 1.19051 1.20609 1.18976 0.90747 0.88822 0.87961 0.75132 0.86458 0.87194 0.84402 0.81909 0.82430 0.83847 0.91733 0.92029 0.97717 0.97486 0.92340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.02 8.51 71.98 0.61 -2.41 16 2 C 0.18 4.00 1.04 -11.54 -0.01 3.99 16 3 O -0.53 -12.09 12.52 -135.71 -1.70 -13.79 16 4 C -0.13 -2.37 3.19 71.98 0.23 -2.14 16 5 S -0.05 -0.89 19.96 -56.49 -1.13 -2.02 16 6 C -0.08 -1.33 6.11 22.62 0.14 -1.20 16 7 C -0.15 -2.26 9.36 22.41 0.21 -2.05 16 8 C -0.07 -0.79 10.04 22.24 0.22 -0.56 16 9 C -0.16 -2.05 10.02 22.35 0.22 -1.82 16 10 C 0.10 1.69 7.30 22.36 0.16 1.85 16 11 F -0.14 -2.61 17.27 44.97 0.78 -1.83 16 12 C -0.15 -2.51 9.77 22.45 0.22 -2.29 16 13 C 0.44 13.50 6.80 71.24 0.48 13.98 16 14 O -0.52 -17.88 15.74 21.97 0.35 -17.53 16 15 O -0.35 -13.35 9.97 -46.46 -0.46 -13.81 16 16 C 0.09 3.77 5.40 71.98 0.39 4.16 16 17 C 0.03 1.62 5.35 29.85 0.16 1.78 16 18 C -0.55 -30.63 9.11 25.60 0.23 -30.40 16 19 H 0.07 3.49 7.74 -2.91 -0.02 3.47 16 20 C 0.01 0.31 5.46 84.66 0.46 0.77 16 21 N -0.93 -54.96 13.29 21.45 0.28 -54.67 16 22 Si 0.97 42.90 29.54 68.60 2.03 44.92 16 23 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 24 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 25 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 26 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 27 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.10 1.82 6.72 -2.39 -0.02 1.81 16 29 H 0.40 6.64 9.04 -74.06 -0.67 5.97 16 30 H 0.12 2.08 7.28 -2.39 -0.02 2.06 16 31 H 0.11 1.72 7.76 -2.39 -0.02 1.70 16 32 H 0.14 1.84 5.88 -2.91 -0.02 1.82 16 33 H 0.16 1.03 8.06 -2.91 -0.02 1.01 16 34 H 0.16 1.30 8.06 -2.91 -0.02 1.27 16 35 H 0.14 2.22 8.06 -2.91 -0.02 2.20 16 36 H 0.06 2.69 8.13 -2.39 -0.02 2.67 16 37 H 0.06 2.61 8.13 -2.39 -0.02 2.59 16 38 H 0.00 0.25 8.14 -2.39 -0.02 0.23 16 39 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 40 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 Total: -1.00 -67.15 362.80 4.28 -62.87 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: 0.40 Total: 12.21 kcal Atomic # 6 Polarization: -20.09 SS G_CDS: 3.74 Total: -16.35 kcal Atomic # 7 Polarization: -54.96 SS G_CDS: 0.28 Total: -54.67 kcal Atomic # 8 Polarization: -43.32 SS G_CDS: -1.82 Total: -45.13 kcal Atomic # 9 Polarization: -2.61 SS G_CDS: 0.78 Total: -1.83 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.92 kcal Atomic # 16 Polarization: -0.89 SS G_CDS: -1.13 Total: -2.02 kcal Total: -67.15 4.28 -62.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000803796874.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.236 kcal (2) G-P(sol) polarization free energy of solvation -67.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.26 seconds