Wall clock time and date at job start Tue Mar 31 2020 14:58:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86803 * 119.99920 * 2 1 4 4 H 1.48498 * 109.47031 * 240.00331 * 3 2 1 5 5 H 1.48498 * 109.47173 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47179 * 120.00387 * 3 2 1 7 7 C 1.38802 * 120.00365 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99905 * 179.97438 * 7 2 1 9 9 S 1.76201 * 119.99587 * 359.97438 * 7 2 1 10 10 C 1.81006 * 99.99672 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.46855 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.46972 * 179.97438 * 11 10 9 13 13 O 1.45208 * 109.47057 * 180.02562 * 12 11 10 14 14 C 1.34227 * 116.99893 * 180.02562 * 13 12 11 15 15 O 1.20828 * 119.99865 * 0.02562 * 14 13 12 16 16 C 1.50697 * 119.99858 * 179.97438 * 14 13 12 17 17 C 1.53008 * 109.47139 * 179.97438 * 16 14 13 18 18 O 1.42895 * 109.47006 * 179.97438 * 17 16 14 19 19 C 1.35951 * 116.99758 * 179.97438 * 18 17 16 20 20 C 1.38708 * 120.03040 * 0.28885 * 19 18 17 21 21 C 1.38147 * 119.96935 * 180.25012 * 20 19 18 22 22 C 1.38455 * 120.02958 * 359.46222 * 21 20 19 23 23 F 1.35101 * 119.97206 * 180.29906 * 22 21 20 24 24 C 1.38452 * 120.06193 * 0.28172 * 22 21 20 25 25 C 1.38156 * 120.03063 * 359.97438 * 24 22 21 26 26 H 0.97003 * 120.00226 * 359.97438 * 1 2 3 27 27 H 1.08995 * 109.47162 * 60.00025 * 10 9 7 28 28 H 1.08994 * 109.46973 * 299.99830 * 10 9 7 29 29 H 1.09009 * 109.47138 * 60.00034 * 11 10 9 30 30 H 1.09000 * 109.47566 * 300.00173 * 11 10 9 31 31 H 1.08995 * 109.47420 * 60.00527 * 12 11 10 32 32 H 1.08995 * 109.47519 * 299.99866 * 12 11 10 33 33 H 1.08997 * 109.47470 * 60.00250 * 16 14 13 34 34 H 1.09003 * 109.47335 * 299.99476 * 16 14 13 35 35 H 1.09005 * 109.46539 * 60.00110 * 17 16 14 36 36 H 1.08995 * 109.46786 * 300.00247 * 17 16 14 37 37 H 1.07998 * 120.01328 * 0.02562 * 20 19 18 38 38 H 1.08002 * 119.98838 * 179.74746 * 21 20 19 39 39 H 1.07997 * 119.98751 * 179.97438 * 24 22 21 40 40 H 1.07999 * 120.02057 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2019 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9794 -5.3242 0.0001 12 6 3.1515 -6.3076 -0.0005 13 8 2.6423 -7.6675 -0.0005 14 6 3.5487 -8.6575 -0.0005 15 8 4.7284 -8.3965 -0.0001 16 6 3.0948 -10.0945 0.0000 17 6 4.3168 -11.0154 -0.0007 18 8 3.8864 -12.3780 0.0004 19 6 4.8556 -13.3313 -0.0006 20 6 6.1926 -12.9620 0.0034 21 6 7.1765 -13.9317 -0.0029 22 6 6.8285 -15.2718 -0.0019 23 9 7.7916 -16.2193 -0.0020 24 6 5.4943 -15.6420 -0.0005 25 6 4.5083 -14.6742 0.0004 26 1 -0.4850 0.8401 0.0004 27 1 3.1245 -3.7313 0.8894 28 1 3.1245 -3.7313 -0.8905 29 1 1.3705 -5.4846 -0.8897 30 1 1.3710 -5.4840 0.8903 31 1 3.7607 -6.1475 0.8890 32 1 3.7595 -6.1478 -0.8909 33 1 2.4952 -10.2866 -0.8897 34 1 2.4958 -10.2860 0.8903 35 1 4.9168 -10.8234 0.8889 36 1 4.9155 -10.8237 -0.8911 37 1 6.4643 -11.9167 0.0077 38 1 8.2176 -13.6445 -0.0040 39 1 5.2243 -16.6876 -0.0002 40 1 3.4677 -14.9631 0.0019 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805392104.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:02 Heat of formation + Delta-G solvation = -162.948788 kcal Electronic energy + Delta-G solvation = -22966.532113 eV Core-core repulsion = 18980.063631 eV Total energy + Delta-G solvation = -3986.468482 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.098 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.24527 -40.90569 -40.40404 -37.87287 -36.92213 -33.65599 -32.75151 -32.47241 -31.69719 -29.67740 -27.00570 -25.66521 -25.06480 -23.40423 -22.49595 -21.42892 -20.90816 -19.05823 -18.04482 -17.63157 -17.40382 -17.28052 -17.00291 -16.40442 -16.35917 -15.91332 -15.16568 -14.88833 -14.84841 -14.80624 -14.36488 -14.14509 -13.72013 -13.54504 -13.32847 -13.20683 -12.80735 -12.78508 -12.28603 -12.24915 -12.12325 -11.41802 -11.31856 -11.24562 -11.18856 -11.03453 -10.99780 -10.79259 -10.67613 -10.38067 -9.72082 -9.68359 -9.09946 -8.61868 -8.40257 -6.60291 -6.27651 -3.99242 0.62818 0.70132 1.91315 2.00855 2.93469 3.05238 3.20318 3.20722 3.25517 3.51048 3.82741 4.04114 4.17086 4.22002 4.26373 4.36433 4.55965 4.58664 4.74912 4.84220 5.01732 5.02070 5.08905 5.09112 5.13375 5.23826 5.33563 5.35075 5.40713 5.61533 5.62188 5.69756 5.70624 5.81965 6.08491 6.17050 6.31557 6.38639 6.60589 6.78151 7.47740 7.55690 8.31416 9.18618 10.80420 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.048502 B = 0.001350 C = 0.001316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.151910 B =20732.545955 C =21273.344709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.274 1.274 7 C -0.521 4.521 8 H 0.073 0.927 9 S -0.123 6.123 10 C -0.115 4.115 11 C -0.098 4.098 12 C 0.073 3.927 13 O -0.351 6.351 14 C 0.468 3.532 15 O -0.512 6.512 16 C -0.115 4.115 17 C 0.069 3.931 18 O -0.311 6.311 19 C 0.125 3.875 20 C -0.180 4.180 21 C -0.111 4.111 22 C 0.058 3.942 23 F -0.142 7.142 24 C -0.114 4.114 25 C -0.123 4.123 26 H 0.269 0.731 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.120 0.880 34 H 0.120 0.880 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.142 0.858 38 H 0.139 0.861 39 H 0.143 0.857 40 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.599 -30.375 0.000 31.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.669 4.669 8 H 0.091 0.909 9 S 0.106 5.894 10 C -0.264 4.264 11 C -0.137 4.137 12 C -0.002 4.002 13 O -0.267 6.267 14 C 0.311 3.689 15 O -0.401 6.401 16 C -0.153 4.153 17 C -0.006 4.006 18 O -0.224 6.224 19 C 0.079 3.921 20 C -0.198 4.198 21 C -0.130 4.130 22 C 0.038 3.962 23 F -0.120 7.120 24 C -0.132 4.132 25 C -0.141 4.141 26 H 0.078 0.922 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.138 0.862 34 H 0.138 0.862 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.159 0.841 38 H 0.157 0.843 39 H 0.160 0.840 40 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 8.472 -30.353 0.001 31.513 hybrid contribution 2.398 1.397 -0.001 2.775 sum 10.870 -28.956 0.000 30.929 Atomic orbital electron populations 1.70000 1.05937 1.27569 1.46944 1.25009 0.95085 0.99104 0.94452 0.86208 0.79242 0.81111 0.78891 1.19897 1.20759 1.19903 1.22657 0.94561 0.90691 1.58956 0.90886 1.84658 1.08680 0.99208 1.96897 1.23182 1.03514 0.96320 1.03355 1.21298 0.96401 0.91559 1.04425 1.23337 0.97896 0.76212 1.02751 1.86470 1.40021 1.17073 1.83147 1.23102 0.84634 0.88501 0.72668 1.90698 1.18581 1.85232 1.45590 1.21067 0.99315 0.86982 1.07901 1.22508 0.96229 0.78298 1.03562 1.85987 1.32931 1.14949 1.88569 1.18971 0.87338 0.89026 0.96738 1.21237 0.91515 1.00840 1.06232 1.20983 1.00833 0.90830 1.00383 1.17611 0.85724 0.85925 1.06916 1.91500 1.62579 1.63650 1.94305 1.20976 0.90587 1.00726 1.00957 1.20305 1.00594 0.89021 1.04219 0.92155 0.91721 0.91715 0.90265 0.90257 0.90976 0.90982 0.86235 0.86226 0.90557 0.90548 0.84071 0.84325 0.83953 0.83923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.58 13.22 55.49 0.73 -24.84 16 2 C 0.07 2.04 5.49 -17.43 -0.10 1.94 16 3 Si 0.92 21.23 29.55 -169.99 -5.02 16.20 16 4 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 6 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.52 -14.67 9.50 30.94 0.29 -14.38 16 8 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 9 S -0.12 -3.12 21.44 -107.50 -2.30 -5.43 16 10 C -0.12 -2.22 5.67 37.16 0.21 -2.01 16 11 C -0.10 -1.52 5.60 -26.73 -0.15 -1.67 16 12 C 0.07 0.97 5.47 37.16 0.20 1.17 16 13 O -0.35 -4.29 10.22 -39.25 -0.40 -4.69 16 14 C 0.47 5.01 7.96 36.00 0.29 5.30 16 15 O -0.51 -6.78 15.73 -18.75 -0.29 -7.08 16 16 C -0.12 -0.78 6.18 -27.88 -0.17 -0.96 16 17 C 0.07 0.49 4.03 37.16 0.15 0.64 16 18 O -0.31 -2.39 10.14 -19.58 -0.20 -2.59 16 19 C 0.12 0.94 6.69 -39.23 -0.26 0.68 16 20 C -0.18 -1.27 9.04 -39.44 -0.36 -1.63 16 21 C -0.11 -0.78 10.02 -39.53 -0.40 -1.18 16 22 C 0.06 0.44 7.30 -39.42 -0.29 0.15 16 23 F -0.14 -1.22 17.27 2.25 0.04 -1.18 16 24 C -0.11 -0.72 10.02 -39.53 -0.40 -1.12 16 25 C -0.12 -0.80 9.99 -39.44 -0.39 -1.19 16 26 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 27 H 0.06 1.23 8.14 -51.92 -0.42 0.80 16 28 H 0.06 1.23 8.14 -51.92 -0.42 0.81 16 29 H 0.08 1.22 8.14 -51.92 -0.42 0.80 16 30 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.07 0.95 8.13 -51.93 -0.42 0.52 16 32 H 0.07 0.95 8.13 -51.93 -0.42 0.52 16 33 H 0.12 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.12 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.08 0.53 7.61 -51.93 -0.40 0.14 16 36 H 0.08 0.53 7.63 -51.93 -0.40 0.14 16 37 H 0.14 0.86 6.30 -52.49 -0.33 0.53 16 38 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 39 H 0.14 0.60 8.06 -52.49 -0.42 0.18 16 40 H 0.14 0.68 8.06 -52.49 -0.42 0.25 16 LS Contribution 368.77 15.07 5.56 5.56 Total: -1.00 -32.41 368.77 -8.58 -40.98 By element: Atomic # 1 Polarization: 2.63 SS G_CDS: -5.32 Total: -2.69 kcal Atomic # 6 Polarization: -12.89 SS G_CDS: -1.37 Total: -14.25 kcal Atomic # 7 Polarization: -25.58 SS G_CDS: 0.73 Total: -24.84 kcal Atomic # 8 Polarization: -13.46 SS G_CDS: -0.89 Total: -14.35 kcal Atomic # 9 Polarization: -1.22 SS G_CDS: 0.04 Total: -1.18 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: -3.12 SS G_CDS: -2.30 Total: -5.43 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.41 -8.58 -40.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805392104.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.966 kcal (2) G-P(sol) polarization free energy of solvation -32.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds