Wall clock time and date at job start Tue Mar 31 2020 14:58:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86803 * 119.99920 * 2 1 4 4 H 1.48498 * 109.47031 * 240.00331 * 3 2 1 5 5 H 1.48498 * 109.47173 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47179 * 120.00387 * 3 2 1 7 7 C 1.38802 * 120.00365 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99905 * 179.97438 * 7 2 1 9 9 S 1.76201 * 119.99587 * 359.97438 * 7 2 1 10 10 C 1.81006 * 99.99672 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.46855 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.46972 * 179.97438 * 11 10 9 13 13 O 1.45208 * 109.47057 * 180.02562 * 12 11 10 14 14 C 1.34227 * 116.99893 * 180.02562 * 13 12 11 15 15 O 1.20828 * 119.99865 * 0.02562 * 14 13 12 16 16 C 1.50697 * 119.99858 * 179.97438 * 14 13 12 17 17 C 1.53008 * 109.47139 * 179.97438 * 16 14 13 18 18 O 1.42895 * 109.47006 * 179.97438 * 17 16 14 19 19 C 1.35951 * 116.99758 * 179.97438 * 18 17 16 20 20 C 1.38708 * 120.03040 * 0.28885 * 19 18 17 21 21 C 1.38147 * 119.96935 * 180.25012 * 20 19 18 22 22 C 1.38455 * 120.02958 * 359.46222 * 21 20 19 23 23 F 1.35101 * 119.97206 * 180.29906 * 22 21 20 24 24 C 1.38452 * 120.06193 * 0.28172 * 22 21 20 25 25 C 1.38156 * 120.03063 * 359.97438 * 24 22 21 26 26 H 0.97003 * 120.00226 * 359.97438 * 1 2 3 27 27 H 1.08995 * 109.47162 * 60.00025 * 10 9 7 28 28 H 1.08994 * 109.46973 * 299.99830 * 10 9 7 29 29 H 1.09009 * 109.47138 * 60.00034 * 11 10 9 30 30 H 1.09000 * 109.47566 * 300.00173 * 11 10 9 31 31 H 1.08995 * 109.47420 * 60.00527 * 12 11 10 32 32 H 1.08995 * 109.47519 * 299.99866 * 12 11 10 33 33 H 1.08997 * 109.47470 * 60.00250 * 16 14 13 34 34 H 1.09003 * 109.47335 * 299.99476 * 16 14 13 35 35 H 1.09005 * 109.46539 * 60.00110 * 17 16 14 36 36 H 1.08995 * 109.46786 * 300.00247 * 17 16 14 37 37 H 1.07998 * 120.01328 * 0.02562 * 20 19 18 38 38 H 1.08002 * 119.98838 * 179.74746 * 21 20 19 39 39 H 1.07997 * 119.98751 * 179.97438 * 24 22 21 40 40 H 1.07999 * 120.02057 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2019 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9794 -5.3242 0.0001 12 6 3.1515 -6.3076 -0.0005 13 8 2.6423 -7.6675 -0.0005 14 6 3.5487 -8.6575 -0.0005 15 8 4.7284 -8.3965 -0.0001 16 6 3.0948 -10.0945 0.0000 17 6 4.3168 -11.0154 -0.0007 18 8 3.8864 -12.3780 0.0004 19 6 4.8556 -13.3313 -0.0006 20 6 6.1926 -12.9620 0.0034 21 6 7.1765 -13.9317 -0.0029 22 6 6.8285 -15.2718 -0.0019 23 9 7.7916 -16.2193 -0.0020 24 6 5.4943 -15.6420 -0.0005 25 6 4.5083 -14.6742 0.0004 26 1 -0.4850 0.8401 0.0004 27 1 3.1245 -3.7313 0.8894 28 1 3.1245 -3.7313 -0.8905 29 1 1.3705 -5.4846 -0.8897 30 1 1.3710 -5.4840 0.8903 31 1 3.7607 -6.1475 0.8890 32 1 3.7595 -6.1478 -0.8909 33 1 2.4952 -10.2866 -0.8897 34 1 2.4958 -10.2860 0.8903 35 1 4.9168 -10.8234 0.8889 36 1 4.9155 -10.8237 -0.8911 37 1 6.4643 -11.9167 0.0077 38 1 8.2176 -13.6445 -0.0040 39 1 5.2243 -16.6876 -0.0002 40 1 3.4677 -14.9631 0.0019 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805392104.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:01 Heat of formation + Delta-G solvation = -179.674891 kcal Electronic energy + Delta-G solvation = -22967.257411 eV Core-core repulsion = 18980.063631 eV Total energy + Delta-G solvation = -3987.193780 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.098 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.84516 -41.70796 -41.04347 -38.45447 -37.85459 -34.93586 -34.58689 -33.39601 -32.19938 -30.22484 -28.30049 -27.55443 -25.91031 -23.96411 -23.10405 -22.70875 -21.69141 -19.70012 -19.49851 -18.71451 -18.27578 -18.08279 -17.59090 -17.26110 -17.14502 -16.89736 -16.53483 -16.09045 -15.99219 -15.67120 -15.33831 -14.92343 -14.60883 -14.55027 -14.17612 -13.96688 -13.82989 -13.80194 -13.68622 -13.14689 -12.93866 -12.81404 -12.78153 -12.64574 -12.39581 -12.39457 -11.83067 -11.78004 -11.76224 -11.51310 -11.45199 -11.14125 -10.36480 -10.21259 -9.16659 -8.68213 -8.38112 -6.14786 0.13298 0.16149 1.07441 1.17611 1.34727 1.41083 1.48427 1.73314 2.25840 2.34875 2.53590 2.96575 3.28399 3.30201 3.44982 3.67804 3.76476 3.83839 3.86461 3.87333 3.97539 4.08952 4.15714 4.26606 4.31926 4.32742 4.50891 4.57280 4.62704 4.68350 4.74622 4.89279 5.01950 5.10362 5.12540 5.12951 5.19446 5.39342 5.42310 5.65601 6.17213 6.24385 6.59829 7.04404 8.70913 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.048502 B = 0.001350 C = 0.001316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.151910 B =20732.545955 C =21273.344709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.018 3.982 3 Si 0.992 3.008 4 H -0.265 1.265 5 H -0.275 1.275 6 H -0.265 1.265 7 C -0.543 4.543 8 H 0.074 0.926 9 S -0.185 6.185 10 C -0.093 4.093 11 C -0.087 4.087 12 C 0.081 3.919 13 O -0.354 6.354 14 C 0.469 3.531 15 O -0.539 6.539 16 C -0.105 4.105 17 C 0.070 3.930 18 O -0.313 6.313 19 C 0.112 3.888 20 C -0.186 4.186 21 C -0.117 4.117 22 C 0.039 3.961 23 F -0.151 7.151 24 C -0.111 4.111 25 C -0.124 4.124 26 H 0.272 0.728 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.139 0.861 34 H 0.139 0.861 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.148 0.852 38 H 0.150 0.850 39 H 0.163 0.837 40 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.190 -31.175 0.001 32.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.187 4.187 3 Si 0.814 3.186 4 H -0.190 1.190 5 H -0.200 1.200 6 H -0.190 1.190 7 C -0.691 4.691 8 H 0.092 0.908 9 S 0.044 5.956 10 C -0.241 4.241 11 C -0.126 4.126 12 C 0.005 3.995 13 O -0.271 6.271 14 C 0.314 3.686 15 O -0.430 6.430 16 C -0.142 4.142 17 C -0.005 4.005 18 O -0.227 6.227 19 C 0.066 3.934 20 C -0.205 4.205 21 C -0.136 4.136 22 C 0.019 3.981 23 F -0.129 7.129 24 C -0.130 4.130 25 C -0.143 4.143 26 H 0.081 0.919 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.157 0.843 34 H 0.157 0.843 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.165 0.835 38 H 0.167 0.833 39 H 0.181 0.819 40 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 9.059 -31.175 0.002 32.464 hybrid contribution 2.230 1.519 -0.001 2.698 sum 11.289 -29.656 0.000 31.732 Atomic orbital electron populations 1.70132 1.07647 1.28688 1.47761 1.26033 0.96003 1.03024 0.93665 0.85087 0.77963 0.76180 0.79331 1.18970 1.19960 1.18979 1.23036 0.94860 0.92013 1.59182 0.90774 1.84627 1.13117 1.00806 1.97073 1.23076 1.00777 0.96623 1.03670 1.21115 0.97132 0.89784 1.04544 1.23046 0.96534 0.76749 1.03124 1.86459 1.40479 1.16713 1.83414 1.23802 0.84051 0.89336 0.71397 1.90693 1.19721 1.85640 1.46919 1.21104 0.99446 0.83958 1.09728 1.22486 0.96318 0.78232 1.03507 1.85962 1.33043 1.15040 1.88684 1.19200 0.87504 0.89488 0.97177 1.21348 0.91547 1.01216 1.06366 1.21157 1.01538 0.90761 1.00164 1.17873 0.86200 0.86057 1.07930 1.91474 1.63010 1.63963 1.94494 1.21222 0.89972 1.01853 0.99913 1.20552 1.01555 0.88593 1.03590 0.91892 0.91333 0.91328 0.90188 0.90179 0.90657 0.90664 0.84297 0.84288 0.90706 0.90699 0.83465 0.83266 0.81941 0.82160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.88 13.22 21.65 0.29 -53.59 16 2 C 0.02 1.01 5.49 84.86 0.47 1.48 16 3 Si 0.99 43.23 29.55 68.60 2.03 45.26 16 4 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 5 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 6 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 7 C -0.54 -30.82 9.50 67.95 0.65 -30.17 16 8 H 0.07 4.03 7.80 -2.91 -0.02 4.01 16 9 S -0.18 -9.55 21.44 -56.49 -1.21 -10.76 16 10 C -0.09 -3.52 5.67 71.98 0.41 -3.11 16 11 C -0.09 -2.61 5.60 30.59 0.17 -2.44 16 12 C 0.08 2.03 5.47 71.98 0.39 2.42 16 13 O -0.35 -8.00 10.22 -51.39 -0.53 -8.53 16 14 C 0.47 9.20 7.96 71.24 0.57 9.77 16 15 O -0.54 -13.61 15.73 21.96 0.35 -13.26 16 16 C -0.11 -1.18 6.18 29.85 0.18 -1.00 16 17 C 0.07 0.86 4.03 71.98 0.29 1.15 16 18 O -0.31 -4.26 10.14 -92.99 -0.94 -5.20 16 19 C 0.11 1.54 6.69 22.50 0.15 1.69 16 20 C -0.19 -2.49 9.04 22.36 0.20 -2.29 16 21 C -0.12 -1.58 10.02 22.30 0.22 -1.36 16 22 C 0.04 0.56 7.30 22.37 0.16 0.73 16 23 F -0.15 -2.53 17.27 44.97 0.78 -1.75 16 24 C -0.11 -1.25 10.02 22.30 0.22 -1.03 16 25 C -0.12 -1.41 9.99 22.36 0.22 -1.18 16 26 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 27 H 0.07 2.55 8.14 -2.40 -0.02 2.53 16 28 H 0.07 2.55 8.14 -2.40 -0.02 2.53 16 29 H 0.08 2.39 8.14 -2.38 -0.02 2.37 16 30 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 31 H 0.08 1.86 8.13 -2.39 -0.02 1.84 16 32 H 0.08 1.86 8.13 -2.39 -0.02 1.84 16 33 H 0.14 1.08 8.14 -2.39 -0.02 1.07 16 34 H 0.14 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.07 0.95 7.61 -2.38 -0.02 0.93 16 36 H 0.07 0.95 7.63 -2.39 -0.02 0.93 16 37 H 0.15 1.69 6.30 -2.91 -0.02 1.67 16 38 H 0.15 1.55 8.06 -2.91 -0.02 1.53 16 39 H 0.16 1.06 8.06 -2.91 -0.02 1.04 16 40 H 0.16 1.16 8.06 -2.91 -0.02 1.14 16 Total: -1.00 -69.72 368.77 6.12 -63.61 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: 1.05 Total: 9.57 kcal Atomic # 6 Polarization: -29.65 SS G_CDS: 4.31 Total: -25.34 kcal Atomic # 7 Polarization: -53.88 SS G_CDS: 0.29 Total: -53.59 kcal Atomic # 8 Polarization: -25.86 SS G_CDS: -1.12 Total: -26.98 kcal Atomic # 9 Polarization: -2.53 SS G_CDS: 0.78 Total: -1.75 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Atomic # 16 Polarization: -9.55 SS G_CDS: -1.21 Total: -10.76 kcal Total: -69.72 6.12 -63.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805392104.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.066 kcal (2) G-P(sol) polarization free energy of solvation -69.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds