Wall clock time and date at job start Tue Mar 31 2020 15:19:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38267 * 119.94843 * 2 1 4 4 C 1.38250 * 120.12767 * 179.97438 * 3 2 1 5 5 C 1.38338 * 120.03013 * 0.04595 * 4 3 2 6 6 F 1.35100 * 120.04992 * 180.25798 * 5 4 3 7 7 C 1.38915 * 119.89989 * 359.97437 * 5 4 3 8 8 O 1.35958 * 120.05920 * 180.02562 * 7 5 4 9 9 C 1.42893 * 116.99849 * 180.02562 * 8 7 5 10 10 C 1.50697 * 109.47063 * 180.02562 * 9 8 7 11 11 O 1.20827 * 120.00304 * 0.02562 * 10 9 8 12 12 O 1.34235 * 120.00207 * 180.02562 * 10 9 8 13 13 C 1.45201 * 116.99895 * 180.02562 * 12 10 9 14 14 C 1.53009 * 109.46524 * 179.97438 * 13 12 10 15 15 C 1.52998 * 109.46675 * 179.97438 * 14 13 12 16 16 S 1.81002 * 109.47042 * 179.97438 * 15 14 13 17 17 C 1.76200 * 99.99924 * 179.97438 * 16 15 14 18 18 H 1.07997 * 120.00095 * 359.97438 * 17 16 15 19 19 C 1.38801 * 120.00101 * 179.97438 * 17 16 15 20 20 N 1.31635 * 119.99645 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00293 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46901 * 60.00468 * 21 19 17 23 23 H 1.48502 * 109.46920 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47007 * 300.00242 * 21 19 17 25 25 C 1.38177 * 119.95723 * 180.02562 * 2 1 3 26 26 H 1.09003 * 109.47192 * 269.97286 * 1 2 3 27 27 H 1.08999 * 109.47384 * 29.97991 * 1 2 3 28 28 H 1.09004 * 109.46808 * 149.97741 * 1 2 3 29 29 H 1.08000 * 119.93535 * 359.97438 * 3 2 1 30 30 H 1.08000 * 119.99054 * 180.02562 * 4 3 2 31 31 H 1.08997 * 109.47429 * 300.00272 * 9 8 7 32 32 H 1.09004 * 109.47080 * 60.00777 * 9 8 7 33 33 H 1.08997 * 109.47064 * 299.99293 * 13 12 10 34 34 H 1.08993 * 109.47506 * 59.99706 * 13 12 10 35 35 H 1.08997 * 109.46941 * 299.99451 * 14 13 12 36 36 H 1.09001 * 109.47248 * 60.00007 * 14 13 12 37 37 H 1.09002 * 109.47682 * 299.99750 * 15 14 13 38 38 H 1.09006 * 109.47451 * 60.00017 * 15 14 13 39 39 H 0.97005 * 119.99695 * 179.97438 * 20 19 17 40 40 H 1.08005 * 120.01400 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1981 0.0000 4 6 3.5798 1.2024 0.0005 5 6 4.2758 0.0069 0.0001 6 9 5.6268 0.0106 0.0059 7 6 3.5836 -1.1975 -0.0003 8 8 4.2644 -2.3743 -0.0002 9 6 3.4871 -3.5734 -0.0012 10 6 4.4062 -4.7677 -0.0003 11 8 5.6039 -4.6084 0.0016 12 8 3.8942 -6.0086 -0.0016 13 6 4.8388 -7.1114 0.0000 14 6 4.0748 -8.4371 -0.0011 15 6 5.0700 -9.5991 -0.0001 16 16 4.1664 -11.1674 -0.0006 17 6 5.5172 -12.2988 -0.0001 18 1 6.5317 -11.9286 0.0000 19 6 5.2774 -13.6660 0.0002 20 7 4.0408 -14.1172 -0.0004 21 14 6.7094 -14.8655 0.0001 22 1 7.5386 -14.6465 1.2124 23 1 6.1897 -16.2566 0.0011 24 1 7.5380 -14.6469 -1.2126 25 6 2.1970 -1.1972 -0.0005 26 1 -0.3634 -0.0005 1.0277 27 1 -0.3634 0.8901 -0.5135 28 1 -0.3633 -0.8898 -0.5142 29 1 1.6554 2.1323 -0.0004 30 1 4.1167 2.1395 0.0010 31 1 2.8576 -3.5991 0.8882 32 1 2.8591 -3.5985 -0.8918 33 1 5.4670 -7.0529 -0.8888 34 1 5.4637 -7.0533 0.8911 35 1 3.4469 -8.4953 0.8880 36 1 3.4496 -8.4954 -0.8920 37 1 5.6977 -9.5408 -0.8893 38 1 5.6956 -9.5410 0.8907 39 1 3.8732 -15.0727 -0.0005 40 1 1.6565 -2.1322 -0.0014 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805500789.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:19:11 Heat of formation + Delta-G solvation = -157.188893 kcal Electronic energy + Delta-G solvation = -23507.532026 eV Core-core repulsion = 19521.313311 eV Total energy + Delta-G solvation = -3986.218714 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.098 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.09064 -41.01921 -40.21219 -38.24917 -36.72907 -33.62045 -32.91752 -32.46552 -31.02266 -29.54245 -27.14501 -26.39597 -25.44617 -23.49123 -22.18391 -21.47996 -21.24365 -18.81985 -17.80941 -17.66344 -17.41596 -17.36014 -17.03375 -16.36338 -16.35047 -15.53263 -15.04788 -14.83890 -14.78929 -14.55535 -14.51918 -14.09763 -13.85406 -13.69134 -13.24471 -12.96754 -12.73226 -12.49212 -12.37268 -12.17771 -12.13839 -11.69815 -11.50581 -11.40947 -11.20198 -11.02720 -10.96741 -10.73391 -10.61760 -10.37797 -9.67724 -9.37112 -9.08992 -8.64662 -8.39763 -6.59499 -6.26915 -3.98396 0.58979 0.72329 1.70377 1.90233 2.98738 3.01117 3.21073 3.21822 3.26339 3.50106 3.78397 4.08529 4.17980 4.21587 4.33922 4.45779 4.47593 4.57425 4.64715 4.91654 5.03801 5.04938 5.08813 5.09748 5.09805 5.29554 5.33449 5.41300 5.43301 5.56175 5.68216 5.71527 5.80315 5.93301 6.07430 6.10266 6.30146 6.39210 6.61146 6.68958 7.50272 7.56796 8.32463 9.19454 10.81144 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.032186 B = 0.001603 C = 0.001530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.736658 B =17458.463410 C =18291.845210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.055 4.055 3 C -0.129 4.129 4 C -0.111 4.111 5 C 0.068 3.932 6 F -0.129 7.129 7 C 0.103 3.897 8 O -0.286 6.286 9 C 0.068 3.932 10 C 0.462 3.538 11 O -0.484 6.484 12 O -0.351 6.351 13 C 0.074 3.926 14 C -0.097 4.097 15 C -0.116 4.116 16 S -0.122 6.122 17 C -0.520 4.520 18 H 0.073 0.927 19 C 0.072 3.928 20 N -0.869 5.869 21 Si 0.920 3.080 22 H -0.274 1.274 23 H -0.282 1.282 24 H -0.274 1.274 25 C -0.185 4.185 26 H 0.076 0.924 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.135 0.865 30 H 0.144 0.856 31 H 0.110 0.890 32 H 0.110 0.890 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.269 0.731 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.153 31.606 0.019 32.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.055 4.055 3 C -0.147 4.147 4 C -0.130 4.130 5 C 0.048 3.952 6 F -0.108 7.108 7 C 0.057 3.943 8 O -0.200 6.200 9 C -0.009 4.009 10 C 0.302 3.698 11 O -0.369 6.369 12 O -0.268 6.268 13 C 0.000 4.000 14 C -0.136 4.136 15 C -0.264 4.264 16 S 0.106 5.894 17 C -0.668 4.668 18 H 0.091 0.909 19 C -0.137 4.137 20 N -0.505 5.505 21 Si 0.746 3.254 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.199 1.199 25 C -0.204 4.204 26 H 0.095 0.905 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.153 0.847 30 H 0.162 0.838 31 H 0.128 0.872 32 H 0.128 0.872 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.078 0.922 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -8.741 31.175 0.018 32.377 hybrid contribution 2.472 -0.705 0.006 2.570 sum -6.269 30.469 0.024 31.108 Atomic orbital electron populations 1.20845 0.90171 1.03414 1.02946 1.19800 0.96664 0.92135 0.96910 1.20857 0.92925 0.98197 1.02734 1.21035 0.94883 0.96345 1.00744 1.16993 0.77434 0.91613 1.09139 1.91538 1.27941 1.97168 1.94153 1.18969 0.91031 0.84759 0.99569 1.86158 1.33935 1.11105 1.88755 1.21952 0.92218 0.80960 1.05728 1.22702 0.88252 0.84677 0.74145 1.90744 1.16481 1.86449 1.43253 1.86416 1.42259 1.14422 1.83674 1.23383 0.90828 0.82840 1.02991 1.21300 0.98415 0.89435 1.04429 1.23189 1.00938 0.98839 1.03449 1.84635 1.13667 0.94225 1.96901 1.22660 0.92807 0.92447 1.58899 0.90859 1.25016 0.96674 0.97550 0.94462 1.70008 1.18825 1.14651 1.46995 0.86200 0.81186 0.79116 0.78907 1.19898 1.20771 1.19891 1.21095 0.91492 0.99915 1.07853 0.90513 0.90982 0.91024 0.84690 0.83819 0.87240 0.87234 0.90818 0.90824 0.90223 0.90228 0.91653 0.91658 0.92173 0.84084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.38 10.01 36.01 0.36 -0.02 16 2 C -0.05 -0.31 5.88 -104.63 -0.62 -0.93 16 3 C -0.13 -0.71 9.69 -39.57 -0.38 -1.09 16 4 C -0.11 -0.77 10.02 -39.54 -0.40 -1.16 16 5 C 0.07 0.68 7.31 -39.29 -0.29 0.39 16 6 F -0.13 -1.58 17.11 2.25 0.04 -1.55 16 7 C 0.10 0.99 6.69 -39.18 -0.26 0.73 16 8 O -0.29 -3.32 9.53 -39.56 -0.38 -3.69 16 9 C 0.07 0.58 5.33 36.00 0.19 0.77 16 10 C 0.46 5.81 8.03 36.00 0.29 6.10 16 11 O -0.48 -7.96 16.25 -25.48 -0.41 -8.37 16 12 O -0.35 -4.47 10.22 -39.27 -0.40 -4.87 16 13 C 0.07 1.03 5.47 37.16 0.20 1.24 16 14 C -0.10 -1.52 5.60 -26.73 -0.15 -1.67 16 15 C -0.12 -2.26 5.67 37.16 0.21 -2.05 16 16 S -0.12 -3.13 21.44 -107.50 -2.30 -5.44 16 17 C -0.52 -14.75 9.50 30.94 0.29 -14.46 16 18 H 0.07 2.01 7.80 -52.49 -0.41 1.60 16 19 C 0.07 2.03 5.49 -17.43 -0.10 1.94 16 20 N -0.87 -25.67 13.22 55.49 0.73 -24.94 16 21 Si 0.92 21.39 29.55 -169.99 -5.02 16.36 16 22 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 24 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 25 C -0.18 -1.25 8.69 -39.45 -0.34 -1.59 16 26 H 0.08 0.21 8.14 -51.93 -0.42 -0.22 16 27 H 0.07 0.17 8.08 -51.93 -0.42 -0.25 16 28 H 0.07 0.20 8.08 -51.93 -0.42 -0.22 16 29 H 0.14 0.41 8.06 -52.49 -0.42 -0.02 16 30 H 0.14 0.69 8.06 -52.49 -0.42 0.26 16 31 H 0.11 0.63 7.66 -51.93 -0.40 0.23 16 32 H 0.11 0.63 7.66 -51.93 -0.40 0.23 16 33 H 0.07 1.02 8.13 -51.93 -0.42 0.60 16 34 H 0.07 1.02 8.13 -51.93 -0.42 0.60 16 35 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 36 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 37 H 0.06 1.26 8.14 -51.92 -0.42 0.84 16 38 H 0.06 1.26 8.14 -51.91 -0.42 0.84 16 39 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 40 H 0.14 0.63 6.30 -52.48 -0.33 0.30 16 LS Contribution 369.04 15.07 5.56 5.56 Total: -1.00 -34.50 369.04 -8.48 -42.99 By element: Atomic # 1 Polarization: 1.06 SS G_CDS: -5.31 Total: -4.25 kcal Atomic # 6 Polarization: -10.82 SS G_CDS: -0.98 Total: -11.80 kcal Atomic # 7 Polarization: -25.67 SS G_CDS: 0.73 Total: -24.94 kcal Atomic # 8 Polarization: -15.74 SS G_CDS: -1.19 Total: -16.94 kcal Atomic # 9 Polarization: -1.58 SS G_CDS: 0.04 Total: -1.55 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: -3.13 SS G_CDS: -2.30 Total: -5.44 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.50 -8.48 -42.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805500789.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.203 kcal (2) G-P(sol) polarization free energy of solvation -34.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds