Wall clock time and date at job start Tue Mar 31 2020 15:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38267 * 119.94843 * 2 1 4 4 C 1.38250 * 120.12767 * 179.97438 * 3 2 1 5 5 C 1.38338 * 120.03013 * 0.04595 * 4 3 2 6 6 F 1.35100 * 120.04992 * 180.25798 * 5 4 3 7 7 C 1.38915 * 119.89989 * 359.97437 * 5 4 3 8 8 O 1.35958 * 120.05920 * 180.02562 * 7 5 4 9 9 C 1.42893 * 116.99849 * 180.02562 * 8 7 5 10 10 C 1.50697 * 109.47063 * 180.02562 * 9 8 7 11 11 O 1.20827 * 120.00304 * 0.02562 * 10 9 8 12 12 O 1.34235 * 120.00207 * 180.02562 * 10 9 8 13 13 C 1.45201 * 116.99895 * 180.02562 * 12 10 9 14 14 C 1.53009 * 109.46524 * 179.97438 * 13 12 10 15 15 C 1.52998 * 109.46675 * 179.97438 * 14 13 12 16 16 S 1.81002 * 109.47042 * 179.97438 * 15 14 13 17 17 C 1.76200 * 99.99924 * 179.97438 * 16 15 14 18 18 H 1.07997 * 120.00095 * 359.97438 * 17 16 15 19 19 C 1.38801 * 120.00101 * 179.97438 * 17 16 15 20 20 N 1.31635 * 119.99645 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00293 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46901 * 60.00468 * 21 19 17 23 23 H 1.48502 * 109.46920 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47007 * 300.00242 * 21 19 17 25 25 C 1.38177 * 119.95723 * 180.02562 * 2 1 3 26 26 H 1.09003 * 109.47192 * 269.97286 * 1 2 3 27 27 H 1.08999 * 109.47384 * 29.97991 * 1 2 3 28 28 H 1.09004 * 109.46808 * 149.97741 * 1 2 3 29 29 H 1.08000 * 119.93535 * 359.97438 * 3 2 1 30 30 H 1.08000 * 119.99054 * 180.02562 * 4 3 2 31 31 H 1.08997 * 109.47429 * 300.00272 * 9 8 7 32 32 H 1.09004 * 109.47080 * 60.00777 * 9 8 7 33 33 H 1.08997 * 109.47064 * 299.99293 * 13 12 10 34 34 H 1.08993 * 109.47506 * 59.99706 * 13 12 10 35 35 H 1.08997 * 109.46941 * 299.99451 * 14 13 12 36 36 H 1.09001 * 109.47248 * 60.00007 * 14 13 12 37 37 H 1.09002 * 109.47682 * 299.99750 * 15 14 13 38 38 H 1.09006 * 109.47451 * 60.00017 * 15 14 13 39 39 H 0.97005 * 119.99695 * 179.97438 * 20 19 17 40 40 H 1.08005 * 120.01400 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1981 0.0000 4 6 3.5798 1.2024 0.0005 5 6 4.2758 0.0069 0.0001 6 9 5.6268 0.0106 0.0059 7 6 3.5836 -1.1975 -0.0003 8 8 4.2644 -2.3743 -0.0002 9 6 3.4871 -3.5734 -0.0012 10 6 4.4062 -4.7677 -0.0003 11 8 5.6039 -4.6084 0.0016 12 8 3.8942 -6.0086 -0.0016 13 6 4.8388 -7.1114 0.0000 14 6 4.0748 -8.4371 -0.0011 15 6 5.0700 -9.5991 -0.0001 16 16 4.1664 -11.1674 -0.0006 17 6 5.5172 -12.2988 -0.0001 18 1 6.5317 -11.9286 0.0000 19 6 5.2774 -13.6660 0.0002 20 7 4.0408 -14.1172 -0.0004 21 14 6.7094 -14.8655 0.0001 22 1 7.5386 -14.6465 1.2124 23 1 6.1897 -16.2566 0.0011 24 1 7.5380 -14.6469 -1.2126 25 6 2.1970 -1.1972 -0.0005 26 1 -0.3634 -0.0005 1.0277 27 1 -0.3634 0.8901 -0.5135 28 1 -0.3633 -0.8898 -0.5142 29 1 1.6554 2.1323 -0.0004 30 1 4.1167 2.1395 0.0010 31 1 2.8576 -3.5991 0.8882 32 1 2.8591 -3.5985 -0.8918 33 1 5.4670 -7.0529 -0.8888 34 1 5.4637 -7.0533 0.8911 35 1 3.4469 -8.4953 0.8880 36 1 3.4496 -8.4954 -0.8920 37 1 5.6977 -9.5408 -0.8893 38 1 5.6956 -9.5410 0.8907 39 1 3.8732 -15.0727 -0.0005 40 1 1.6565 -2.1322 -0.0014 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805500789.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:19:10 Heat of formation + Delta-G solvation = -176.095831 kcal Electronic energy + Delta-G solvation = -23508.351892 eV Core-core repulsion = 19521.313311 eV Total energy + Delta-G solvation = -3987.038581 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.098 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.85896 -41.89724 -40.97524 -38.87256 -37.81383 -34.97317 -34.59308 -33.35934 -31.60856 -30.26333 -28.11863 -27.56901 -27.12342 -24.13528 -22.80073 -22.70823 -22.17787 -19.64675 -19.47065 -18.53284 -18.42404 -18.25871 -17.77462 -17.24874 -17.21756 -16.90289 -16.42057 -16.15299 -15.72308 -15.54288 -15.26819 -15.07117 -14.56746 -14.44723 -14.22998 -14.15286 -13.88466 -13.81025 -13.15265 -13.00450 -12.93686 -12.85008 -12.66842 -12.58993 -12.44927 -12.42902 -12.18068 -12.01422 -11.76986 -11.58450 -11.46704 -11.14842 -10.37930 -9.86743 -9.22912 -8.68588 -8.38903 -6.15324 0.06963 0.20410 0.84114 0.92634 1.31641 1.40485 1.47102 1.69605 2.24971 2.32390 2.51541 2.95662 3.21739 3.23977 3.37589 3.72414 3.76587 3.81158 3.90808 3.93147 3.93892 4.11427 4.13862 4.23974 4.29643 4.42323 4.50231 4.66686 4.71960 4.89737 4.92316 4.98387 4.99820 5.05348 5.18743 5.30309 5.31303 5.38976 5.50497 5.64030 6.10899 6.16634 6.50508 7.03669 8.70062 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.032186 B = 0.001603 C = 0.001530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.736658 B =17458.463410 C =18291.845210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.052 4.052 3 C -0.125 4.125 4 C -0.110 4.110 5 C 0.025 3.975 6 F -0.155 7.155 7 C 0.083 3.917 8 O -0.322 6.322 9 C 0.070 3.930 10 C 0.463 3.537 11 O -0.529 6.529 12 O -0.344 6.344 13 C 0.080 3.920 14 C -0.084 4.084 15 C -0.095 4.095 16 S -0.180 6.180 17 C -0.544 4.544 18 H 0.073 0.927 19 C 0.018 3.982 20 N -0.905 5.905 21 Si 0.993 3.007 22 H -0.266 1.266 23 H -0.274 1.274 24 H -0.266 1.266 25 C -0.184 4.184 26 H 0.086 0.914 27 H 0.084 0.916 28 H 0.079 0.921 29 H 0.165 0.835 30 H 0.160 0.840 31 H 0.143 0.857 32 H 0.143 0.857 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.272 0.728 40 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.543 32.910 0.011 34.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.053 4.053 3 C -0.143 4.143 4 C -0.129 4.129 5 C 0.006 3.994 6 F -0.134 7.134 7 C 0.038 3.962 8 O -0.237 6.237 9 C -0.005 4.005 10 C 0.306 3.694 11 O -0.418 6.418 12 O -0.261 6.261 13 C 0.005 3.995 14 C -0.123 4.123 15 C -0.243 4.243 16 S 0.049 5.951 17 C -0.692 4.692 18 H 0.091 0.909 19 C -0.188 4.188 20 N -0.541 5.541 21 Si 0.815 3.185 22 H -0.190 1.190 23 H -0.199 1.199 24 H -0.190 1.190 25 C -0.202 4.202 26 H 0.104 0.896 27 H 0.103 0.897 28 H 0.098 0.902 29 H 0.182 0.818 30 H 0.177 0.823 31 H 0.161 0.839 32 H 0.161 0.839 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.102 0.898 36 H 0.102 0.898 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -10.159 32.495 0.010 34.046 hybrid contribution 2.807 -0.961 0.009 2.967 sum -7.352 31.534 0.020 32.380 Atomic orbital electron populations 1.20924 0.88046 1.04512 1.03821 1.20214 0.98149 0.91748 0.95166 1.21264 0.92303 0.99588 1.01145 1.21301 0.95721 0.95937 0.99922 1.17556 0.76729 0.93221 1.11919 1.91459 1.29850 1.97363 1.94687 1.19197 0.92165 0.83874 1.01009 1.86086 1.35818 1.12295 1.89451 1.22222 0.91023 0.78440 1.08810 1.23565 0.88330 0.85184 0.72333 1.90730 1.18654 1.86852 1.45564 1.86405 1.41590 1.14481 1.83594 1.23120 0.90600 0.82593 1.03168 1.21109 0.97491 0.88829 1.04858 1.23088 1.01062 0.96537 1.03656 1.84571 1.15541 0.97951 1.97067 1.23038 0.93337 0.93604 1.59203 0.90863 1.26035 0.99606 0.99439 0.93680 1.70134 1.21043 1.15230 1.47726 0.85086 0.77545 0.76627 0.79291 1.19046 1.19861 1.19035 1.21394 0.90244 1.01579 1.07030 0.89579 0.89689 0.90244 0.81756 0.82272 0.83928 0.83914 0.90744 0.90750 0.89821 0.89827 0.91398 0.91405 0.91869 0.81667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.32 10.01 71.24 0.71 0.39 16 2 C -0.05 -0.44 5.88 -19.87 -0.12 -0.56 16 3 C -0.13 -1.05 9.69 22.28 0.22 -0.83 16 4 C -0.11 -1.43 10.02 22.30 0.22 -1.20 16 5 C 0.03 0.52 7.31 22.46 0.16 0.68 16 6 F -0.15 -4.09 17.11 44.97 0.77 -3.33 16 7 C 0.08 1.57 6.69 22.53 0.15 1.72 16 8 O -0.32 -7.45 9.53 -73.99 -0.71 -8.16 16 9 C 0.07 1.08 5.33 71.23 0.38 1.46 16 10 C 0.46 11.27 8.03 71.23 0.57 11.84 16 11 O -0.53 -17.68 16.25 28.39 0.46 -17.22 16 12 O -0.34 -8.26 10.22 -51.47 -0.53 -8.79 16 13 C 0.08 2.16 5.47 71.99 0.39 2.55 16 14 C -0.08 -2.55 5.60 30.60 0.17 -2.38 16 15 C -0.09 -3.66 5.67 71.98 0.41 -3.25 16 16 S -0.18 -9.33 21.44 -56.49 -1.21 -10.55 16 17 C -0.54 -31.13 9.50 67.95 0.65 -30.48 16 18 H 0.07 4.04 7.80 -2.91 -0.02 4.01 16 19 C 0.02 1.00 5.49 84.86 0.47 1.47 16 20 N -0.91 -53.95 13.22 21.65 0.29 -53.66 16 21 Si 0.99 43.66 29.55 68.60 2.03 45.69 16 22 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 23 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 24 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 25 C -0.18 -2.07 8.69 22.35 0.19 -1.88 16 26 H 0.09 0.14 8.14 -2.39 -0.02 0.12 16 27 H 0.08 0.05 8.08 -2.39 -0.02 0.03 16 28 H 0.08 0.13 8.08 -2.38 -0.02 0.11 16 29 H 0.16 0.37 8.06 -2.91 -0.02 0.34 16 30 H 0.16 1.38 8.06 -2.91 -0.02 1.36 16 31 H 0.14 1.22 7.66 -2.39 -0.02 1.20 16 32 H 0.14 1.22 7.66 -2.39 -0.02 1.20 16 33 H 0.07 2.01 8.13 -2.39 -0.02 1.99 16 34 H 0.07 2.00 8.13 -2.39 -0.02 1.98 16 35 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 36 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 37 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 38 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 39 H 0.27 15.09 8.31 -92.70 -0.77 14.32 16 40 H 0.17 0.89 6.30 -2.91 -0.02 0.87 16 Total: -1.00 -77.57 369.04 6.73 -70.84 By element: Atomic # 1 Polarization: 4.60 SS G_CDS: 1.05 Total: 5.65 kcal Atomic # 6 Polarization: -25.06 SS G_CDS: 4.58 Total: -20.48 kcal Atomic # 7 Polarization: -53.95 SS G_CDS: 0.29 Total: -53.66 kcal Atomic # 8 Polarization: -33.39 SS G_CDS: -0.77 Total: -34.16 kcal Atomic # 9 Polarization: -4.09 SS G_CDS: 0.77 Total: -3.33 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Atomic # 16 Polarization: -9.33 SS G_CDS: -1.21 Total: -10.55 kcal Total: -77.57 6.73 -70.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805500789.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.258 kcal (2) G-P(sol) polarization free energy of solvation -77.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds