Wall clock time and date at job start Tue Mar 31 2020 14:53:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86798 * 119.99901 * 2 1 4 4 H 1.48506 * 109.46996 * 269.99946 * 3 2 1 5 5 H 1.48498 * 109.47188 * 29.99937 * 3 2 1 6 6 H 1.48499 * 109.47268 * 149.99843 * 3 2 1 7 7 C 1.38800 * 120.00166 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99944 * 359.97438 * 7 2 1 9 9 S 1.76196 * 120.00036 * 180.02562 * 7 2 1 10 10 C 1.81003 * 100.00033 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47340 * 179.97438 * 10 9 7 12 12 C 1.52994 * 109.47236 * 180.02562 * 11 10 9 13 13 O 1.45202 * 109.46919 * 180.02562 * 12 11 10 14 14 C 1.34230 * 116.99836 * 180.02562 * 13 12 11 15 15 O 1.20833 * 119.99930 * 359.97438 * 14 13 12 16 16 C 1.50697 * 120.00262 * 180.27336 * 14 13 12 17 17 C 1.52996 * 109.47491 * 179.72204 * 16 14 13 18 18 H 1.08999 * 109.47456 * 54.99697 * 17 16 14 19 19 O 1.42906 * 109.46996 * 294.99650 * 17 16 14 20 20 C 1.50695 * 109.47310 * 174.99936 * 17 16 14 21 21 C 1.38270 * 119.98749 * 265.00081 * 20 17 16 22 22 C 1.38224 * 120.05212 * 180.02562 * 21 20 17 23 23 C 1.38218 * 120.02536 * 359.95349 * 22 21 20 24 24 C 1.38440 * 119.97543 * 0.02562 * 23 22 21 25 25 F 1.35106 * 120.02553 * 179.97438 * 24 23 22 26 26 C 1.38177 * 119.99016 * 84.72095 * 20 17 16 27 27 H 0.96993 * 120.00015 * 0.02562 * 1 2 3 28 28 H 1.09006 * 109.46844 * 59.99958 * 10 9 7 29 29 H 1.08996 * 109.47097 * 299.99829 * 10 9 7 30 30 H 1.08997 * 109.46515 * 59.99852 * 11 10 9 31 31 H 1.09002 * 109.46973 * 300.00846 * 11 10 9 32 32 H 1.08998 * 109.47242 * 60.00031 * 12 11 10 33 33 H 1.09004 * 109.46797 * 299.99847 * 12 11 10 34 34 H 1.09004 * 109.46801 * 299.72165 * 16 14 13 35 35 H 1.09000 * 109.47461 * 59.71633 * 16 14 13 36 36 H 0.96700 * 114.00286 * 299.99941 * 19 17 16 37 37 H 1.08000 * 119.97495 * 359.97438 * 21 20 17 38 38 H 1.07998 * 119.98660 * 179.97438 * 22 21 20 39 39 H 1.08002 * 120.01358 * 180.02562 * 23 22 21 40 40 H 1.08002 * 120.01136 * 359.97438 * 26 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5479 1.4402 0.7001 7 6 2.0104 -1.2020 -0.0005 8 1 1.4704 -2.1374 -0.0005 9 16 3.7723 -1.2020 0.0001 10 6 4.0867 -2.9845 -0.0001 11 6 5.5958 -3.2363 -0.0002 12 6 5.8615 -4.7430 -0.0011 13 8 7.2938 -4.9818 -0.0006 14 6 7.6981 -6.2618 -0.0018 15 8 6.8822 -7.1531 -0.0028 16 6 9.1694 -6.5873 0.0048 17 6 9.3559 -8.1058 0.0089 18 1 8.8185 -8.5402 -0.8341 19 8 8.8440 -8.6453 1.2292 20 6 10.8224 -8.4322 -0.1083 21 6 11.3741 -8.6990 -1.3478 22 6 12.7190 -8.9990 -1.4568 23 6 13.5141 -9.0317 -0.3267 24 6 12.9630 -8.7643 0.9148 25 9 13.7392 -8.7965 2.0202 26 6 11.6165 -8.4590 1.0222 27 1 -0.4850 0.8400 -0.0004 28 1 3.6441 -3.4313 -0.8904 29 1 3.6435 -3.4317 0.8896 30 1 6.0387 -2.7893 0.8898 31 1 6.0387 -2.7890 -0.8901 32 1 5.4186 -5.1895 -0.8914 33 1 5.4186 -5.1905 0.8886 34 1 9.6387 -6.1660 -0.8842 35 1 9.6317 -6.1620 0.8957 36 1 9.2769 -8.3026 2.0230 37 1 10.7536 -8.6738 -2.2313 38 1 13.1487 -9.2077 -2.4253 39 1 14.5650 -9.2658 -0.4121 40 1 11.1865 -8.2457 1.9896 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805517440.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:30 Heat of formation + Delta-G solvation = -174.402207 kcal Electronic energy + Delta-G solvation = -23642.025463 eV Core-core repulsion = 19655.060323 eV Total energy + Delta-G solvation = -3986.965140 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.098 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.40154 -40.84373 -39.90481 -37.59626 -36.51339 -33.67481 -32.70719 -32.47146 -31.27110 -30.49919 -26.88705 -25.71463 -25.11345 -23.27522 -22.15520 -21.48446 -20.98076 -18.73346 -17.72945 -17.37074 -17.29913 -16.88877 -16.77737 -16.69655 -16.10098 -15.97046 -15.45843 -15.02187 -14.76562 -14.61400 -14.42788 -14.28625 -13.66647 -13.29292 -13.03568 -12.94738 -12.80819 -12.53605 -12.47007 -12.33201 -11.99200 -11.68732 -11.54365 -11.23573 -11.11693 -11.00037 -10.81755 -10.68584 -10.38595 -10.25558 -9.84389 -9.60557 -9.27239 -9.04149 -8.63587 -7.00210 -6.31474 -4.05084 0.50037 0.58490 2.06309 2.38739 2.93112 3.00829 3.27516 3.42278 3.52062 3.61294 3.88003 3.97133 4.10040 4.18758 4.28179 4.41473 4.52605 4.53877 4.70525 4.73735 4.83498 4.99666 5.01912 5.07462 5.12662 5.15212 5.19480 5.36246 5.42936 5.50839 5.65323 5.69152 5.72609 5.83459 6.02440 6.26331 6.30570 6.36226 6.54706 7.09761 7.62967 7.92087 8.41419 9.13782 10.77897 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.031800 B = 0.001635 C = 0.001611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.301499 B =17118.945802 C =17371.419483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.092 3.908 3 Si 0.862 3.138 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.238 1.238 7 C -0.505 4.505 8 H 0.089 0.911 9 S -0.206 6.206 10 C -0.085 4.085 11 C -0.101 4.101 12 C 0.073 3.927 13 O -0.358 6.358 14 C 0.458 3.542 15 O -0.492 6.492 16 C -0.146 4.146 17 C 0.162 3.838 18 H 0.123 0.877 19 O -0.537 6.537 20 C -0.089 4.089 21 C -0.118 4.118 22 C -0.086 4.086 23 C -0.153 4.153 24 C 0.103 3.897 25 F -0.138 7.138 26 C -0.145 4.145 27 H 0.271 0.729 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.118 0.882 35 H 0.111 0.889 36 H 0.371 0.629 37 H 0.134 0.866 38 H 0.137 0.863 39 H 0.137 0.863 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.960 -18.315 -1.348 34.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.116 4.116 3 Si 0.687 3.313 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.162 1.162 7 C -0.653 4.653 8 H 0.107 0.893 9 S 0.021 5.979 10 C -0.233 4.233 11 C -0.139 4.139 12 C -0.002 4.002 13 O -0.275 6.275 14 C 0.300 3.700 15 O -0.379 6.379 16 C -0.183 4.183 17 C 0.102 3.898 18 H 0.140 0.860 19 O -0.342 6.342 20 C -0.089 4.089 21 C -0.136 4.136 22 C -0.104 4.104 23 C -0.171 4.171 24 C 0.084 3.916 25 F -0.116 7.116 26 C -0.164 4.164 27 H 0.081 0.919 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.136 0.864 35 H 0.129 0.871 36 H 0.219 0.781 37 H 0.152 0.848 38 H 0.154 0.846 39 H 0.155 0.845 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 28.843 -17.899 -1.704 33.988 hybrid contribution -0.314 0.085 0.537 0.628 sum 28.530 -17.813 -1.167 33.654 Atomic orbital electron populations 1.69937 1.05910 1.27766 1.48034 1.24794 0.94523 0.99020 0.93288 0.86670 0.81726 0.83206 0.79734 1.19324 1.20032 1.16167 1.22123 0.86950 0.97528 1.58679 0.89291 1.84157 1.11847 1.04305 1.97560 1.22950 0.95996 1.00087 1.04258 1.21327 0.95933 0.92326 1.04352 1.23225 0.76172 0.97931 1.02856 1.86460 1.28849 1.28527 1.83692 1.23294 0.92151 0.81175 0.73367 1.90735 1.55364 1.47714 1.44090 1.22168 0.90930 0.98073 1.07172 1.20626 0.88607 0.90487 0.90041 0.85975 1.86804 1.63383 1.69201 1.14766 1.20360 0.96178 0.99101 0.93306 1.21121 0.95544 0.99765 0.97155 1.21056 0.93393 0.97572 0.98402 1.21241 1.01470 1.03124 0.91313 1.17643 0.88925 1.02039 0.83018 1.91529 1.74578 1.93989 1.51554 1.20869 0.92183 1.03432 0.99936 0.91915 0.91003 0.90951 0.90289 0.90301 0.90985 0.90960 0.86416 0.87115 0.78103 0.84767 0.84563 0.84545 0.84658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.53 13.97 55.49 0.78 -25.76 16 2 C 0.09 2.68 5.50 -17.43 -0.10 2.58 16 3 Si 0.86 21.28 27.74 -169.99 -4.71 16.57 16 4 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.24 -5.73 6.74 56.52 0.38 -5.35 16 7 C -0.51 -14.54 10.04 30.94 0.31 -14.23 16 8 H 0.09 2.73 8.03 -52.49 -0.42 2.30 16 9 S -0.21 -4.94 19.41 -107.50 -2.09 -7.03 16 10 C -0.08 -1.59 5.67 37.16 0.21 -1.38 16 11 C -0.10 -1.51 5.60 -26.73 -0.15 -1.66 16 12 C 0.07 0.98 5.47 37.15 0.20 1.19 16 13 O -0.36 -4.44 10.22 -39.26 -0.40 -4.84 16 14 C 0.46 5.13 7.84 36.00 0.28 5.41 16 15 O -0.49 -7.11 15.17 -24.06 -0.36 -7.48 16 16 C -0.15 -0.95 5.48 -27.89 -0.15 -1.11 16 17 C 0.16 1.12 2.76 -27.89 -0.08 1.04 16 18 H 0.12 0.93 7.86 -51.93 -0.41 0.52 16 19 O -0.54 -4.66 12.37 -49.67 -0.61 -5.28 16 20 C -0.09 -0.52 5.00 -104.64 -0.52 -1.05 16 21 C -0.12 -0.58 9.68 -39.57 -0.38 -0.97 16 22 C -0.09 -0.39 10.04 -39.59 -0.40 -0.78 16 23 C -0.15 -0.83 10.03 -39.51 -0.40 -1.23 16 24 C 0.10 0.70 7.30 -39.42 -0.29 0.42 16 25 F -0.14 -1.11 17.27 2.25 0.04 -1.07 16 26 C -0.15 -0.88 9.31 -39.51 -0.37 -1.25 16 27 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 28 H 0.07 1.35 8.14 -51.91 -0.42 0.92 16 29 H 0.07 1.36 8.14 -51.92 -0.42 0.94 16 30 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 31 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 32 H 0.07 0.96 8.13 -51.93 -0.42 0.54 16 33 H 0.07 0.98 8.13 -51.93 -0.42 0.56 16 34 H 0.12 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.37 1.85 7.40 45.56 0.34 2.18 16 37 H 0.13 0.43 8.06 -52.49 -0.42 0.01 16 38 H 0.14 0.30 8.06 -52.49 -0.42 -0.13 16 39 H 0.14 0.52 8.06 -52.49 -0.42 0.10 16 40 H 0.14 0.59 6.62 -52.49 -0.35 0.24 16 LS Contribution 364.32 15.07 5.49 5.49 Total: -1.00 -34.58 364.32 -8.35 -42.93 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: -4.65 Total: -0.53 kcal Atomic # 6 Polarization: -11.19 SS G_CDS: -1.82 Total: -13.01 kcal Atomic # 7 Polarization: -26.53 SS G_CDS: 0.78 Total: -25.76 kcal Atomic # 8 Polarization: -16.21 SS G_CDS: -1.38 Total: -17.59 kcal Atomic # 9 Polarization: -1.11 SS G_CDS: 0.04 Total: -1.07 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.71 Total: 16.57 kcal Atomic # 16 Polarization: -4.94 SS G_CDS: -2.09 Total: -7.03 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.58 -8.35 -42.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805517440.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.474 kcal (2) G-P(sol) polarization free energy of solvation -34.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds