Wall clock time and date at job start Tue Mar 31 2020 14:53:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86798 * 119.99901 * 2 1 4 4 H 1.48506 * 109.46996 * 269.99946 * 3 2 1 5 5 H 1.48498 * 109.47188 * 29.99937 * 3 2 1 6 6 H 1.48499 * 109.47268 * 149.99843 * 3 2 1 7 7 C 1.38800 * 120.00166 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99944 * 359.97438 * 7 2 1 9 9 S 1.76196 * 120.00036 * 180.02562 * 7 2 1 10 10 C 1.81003 * 100.00033 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47340 * 179.97438 * 10 9 7 12 12 C 1.52994 * 109.47236 * 180.02562 * 11 10 9 13 13 O 1.45202 * 109.46919 * 180.02562 * 12 11 10 14 14 C 1.34230 * 116.99836 * 180.02562 * 13 12 11 15 15 O 1.20833 * 119.99930 * 359.97438 * 14 13 12 16 16 C 1.50697 * 120.00262 * 180.27336 * 14 13 12 17 17 C 1.52996 * 109.47491 * 179.72204 * 16 14 13 18 18 H 1.08999 * 109.47456 * 54.99697 * 17 16 14 19 19 O 1.42906 * 109.46996 * 294.99650 * 17 16 14 20 20 C 1.50695 * 109.47310 * 174.99936 * 17 16 14 21 21 C 1.38270 * 119.98749 * 265.00081 * 20 17 16 22 22 C 1.38224 * 120.05212 * 180.02562 * 21 20 17 23 23 C 1.38218 * 120.02536 * 359.95349 * 22 21 20 24 24 C 1.38440 * 119.97543 * 0.02562 * 23 22 21 25 25 F 1.35106 * 120.02553 * 179.97438 * 24 23 22 26 26 C 1.38177 * 119.99016 * 84.72095 * 20 17 16 27 27 H 0.96993 * 120.00015 * 0.02562 * 1 2 3 28 28 H 1.09006 * 109.46844 * 59.99958 * 10 9 7 29 29 H 1.08996 * 109.47097 * 299.99829 * 10 9 7 30 30 H 1.08997 * 109.46515 * 59.99852 * 11 10 9 31 31 H 1.09002 * 109.46973 * 300.00846 * 11 10 9 32 32 H 1.08998 * 109.47242 * 60.00031 * 12 11 10 33 33 H 1.09004 * 109.46797 * 299.99847 * 12 11 10 34 34 H 1.09004 * 109.46801 * 299.72165 * 16 14 13 35 35 H 1.09000 * 109.47461 * 59.71633 * 16 14 13 36 36 H 0.96700 * 114.00286 * 299.99941 * 19 17 16 37 37 H 1.08000 * 119.97495 * 359.97438 * 21 20 17 38 38 H 1.07998 * 119.98660 * 179.97438 * 22 21 20 39 39 H 1.08002 * 120.01358 * 180.02562 * 23 22 21 40 40 H 1.08002 * 120.01136 * 359.97438 * 26 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5479 1.4402 0.7001 7 6 2.0104 -1.2020 -0.0005 8 1 1.4704 -2.1374 -0.0005 9 16 3.7723 -1.2020 0.0001 10 6 4.0867 -2.9845 -0.0001 11 6 5.5958 -3.2363 -0.0002 12 6 5.8615 -4.7430 -0.0011 13 8 7.2938 -4.9818 -0.0006 14 6 7.6981 -6.2618 -0.0018 15 8 6.8822 -7.1531 -0.0028 16 6 9.1694 -6.5873 0.0048 17 6 9.3559 -8.1058 0.0089 18 1 8.8185 -8.5402 -0.8341 19 8 8.8440 -8.6453 1.2292 20 6 10.8224 -8.4322 -0.1083 21 6 11.3741 -8.6990 -1.3478 22 6 12.7190 -8.9990 -1.4568 23 6 13.5141 -9.0317 -0.3267 24 6 12.9630 -8.7643 0.9148 25 9 13.7392 -8.7965 2.0202 26 6 11.6165 -8.4590 1.0222 27 1 -0.4850 0.8400 -0.0004 28 1 3.6441 -3.4313 -0.8904 29 1 3.6435 -3.4317 0.8896 30 1 6.0387 -2.7893 0.8898 31 1 6.0387 -2.7890 -0.8901 32 1 5.4186 -5.1895 -0.8914 33 1 5.4186 -5.1905 0.8886 34 1 9.6387 -6.1660 -0.8842 35 1 9.6317 -6.1620 0.8957 36 1 9.2769 -8.3026 2.0230 37 1 10.7536 -8.6738 -2.2313 38 1 13.1487 -9.2077 -2.4253 39 1 14.5650 -9.2658 -0.4121 40 1 11.1865 -8.2457 1.9896 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805517440.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:29 Heat of formation + Delta-G solvation = -195.367412 kcal Electronic energy + Delta-G solvation = -23642.934582 eV Core-core repulsion = 19655.060323 eV Total energy + Delta-G solvation = -3987.874259 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.098 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.91350 -41.66946 -40.44708 -38.26861 -37.38563 -34.94050 -34.68741 -33.25027 -31.66792 -31.02190 -28.24341 -27.68182 -25.82401 -23.67231 -22.92539 -22.55962 -21.73630 -19.66878 -19.25827 -18.46005 -18.00957 -17.60634 -17.47020 -17.12511 -17.10863 -16.73449 -16.60976 -16.31860 -15.93748 -15.54813 -15.24056 -14.95122 -14.76548 -14.36213 -14.28138 -13.98270 -13.95606 -13.46421 -13.32705 -13.07105 -12.96115 -12.87848 -12.61086 -12.40294 -12.37630 -12.27673 -12.13698 -11.80723 -11.53226 -11.50477 -11.24670 -11.16907 -10.61296 -9.99595 -9.69225 -9.01236 -8.52424 -6.24860 0.09480 0.20059 1.06517 1.20182 1.32910 1.45064 1.52594 1.85251 2.24544 2.55594 2.65403 2.85573 3.14666 3.41168 3.45404 3.58684 3.75943 3.83000 3.91815 3.97049 4.07530 4.11998 4.15272 4.25374 4.28584 4.37205 4.53826 4.57711 4.65072 4.72579 4.80991 4.98847 5.06249 5.10578 5.13481 5.33567 5.43927 5.49027 5.68781 5.88754 6.09692 6.68989 6.73221 6.90993 8.60611 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.031800 B = 0.001635 C = 0.001611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.301499 B =17118.945802 C =17371.419483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.037 3.963 3 Si 0.927 3.073 4 H -0.260 1.260 5 H -0.263 1.263 6 H -0.227 1.227 7 C -0.528 4.528 8 H 0.050 0.950 9 S -0.205 6.205 10 C -0.075 4.075 11 C -0.087 4.087 12 C 0.079 3.921 13 O -0.358 6.358 14 C 0.458 3.542 15 O -0.529 6.529 16 C -0.136 4.136 17 C 0.167 3.833 18 H 0.112 0.888 19 O -0.562 6.562 20 C -0.092 4.092 21 C -0.119 4.119 22 C -0.086 4.086 23 C -0.156 4.156 24 C 0.078 3.922 25 F -0.151 7.151 26 C -0.150 4.150 27 H 0.277 0.723 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.144 0.856 35 H 0.133 0.867 36 H 0.385 0.615 37 H 0.152 0.848 38 H 0.162 0.838 39 H 0.149 0.851 40 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.695 -17.865 -1.995 36.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.168 4.168 3 Si 0.748 3.252 4 H -0.185 1.185 5 H -0.188 1.188 6 H -0.150 1.150 7 C -0.675 4.675 8 H 0.069 0.931 9 S 0.023 5.977 10 C -0.224 4.224 11 C -0.126 4.126 12 C 0.003 3.997 13 O -0.275 6.275 14 C 0.302 3.698 15 O -0.418 6.418 16 C -0.173 4.173 17 C 0.107 3.893 18 H 0.130 0.870 19 O -0.370 6.370 20 C -0.093 4.093 21 C -0.137 4.137 22 C -0.104 4.104 23 C -0.175 4.175 24 C 0.059 3.941 25 F -0.130 7.130 26 C -0.169 4.169 27 H 0.086 0.914 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.104 0.896 31 H 0.105 0.895 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.161 0.839 35 H 0.151 0.849 36 H 0.234 0.766 37 H 0.170 0.830 38 H 0.179 0.821 39 H 0.167 0.833 40 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 31.597 -17.454 -2.344 36.174 hybrid contribution -1.158 -0.223 0.718 1.381 sum 30.439 -17.677 -1.626 35.237 Atomic orbital electron populations 1.70043 1.07724 1.29174 1.49020 1.25809 0.95438 1.02877 0.92638 0.85696 0.80792 0.78439 0.80309 1.18472 1.18801 1.14982 1.22364 0.90177 0.96331 1.58632 0.93149 1.83780 1.07398 1.08927 1.97593 1.22986 0.99067 0.96141 1.04162 1.21143 0.92718 0.93633 1.05069 1.22964 0.77304 0.96579 1.02809 1.86460 1.27704 1.29542 1.83829 1.24201 0.93710 0.80099 0.71787 1.90729 1.56731 1.48446 1.45885 1.22294 0.87547 0.98050 1.09424 1.20554 0.89041 0.90500 0.89183 0.87015 1.86761 1.64294 1.69939 1.15972 1.20243 0.95358 0.99972 0.93725 1.21423 0.96061 0.98783 0.97438 1.21365 0.93137 0.96704 0.99165 1.21507 1.02385 1.02473 0.91116 1.17920 0.89357 1.03625 0.83243 1.91492 1.74918 1.94282 1.52264 1.21014 0.92024 1.03217 1.00641 0.91369 0.91111 0.91179 0.89636 0.89482 0.90995 0.91248 0.83859 0.84865 0.76556 0.83023 0.82061 0.83300 0.83627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.62 13.97 21.65 0.30 -56.31 16 2 C 0.04 2.17 5.50 84.86 0.47 2.64 16 3 Si 0.93 43.47 27.74 68.60 1.90 45.37 16 4 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 5 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 6 H -0.23 -10.14 6.74 99.48 0.67 -9.47 16 7 C -0.53 -30.94 10.04 67.95 0.68 -30.26 16 8 H 0.05 3.23 8.03 -2.91 -0.02 3.20 16 9 S -0.20 -9.63 19.41 -56.49 -1.10 -10.72 16 10 C -0.08 -2.78 5.67 71.98 0.41 -2.37 16 11 C -0.09 -2.44 5.60 30.59 0.17 -2.27 16 12 C 0.08 2.01 5.47 71.98 0.39 2.40 16 13 O -0.36 -8.12 10.22 -51.41 -0.53 -8.65 16 14 C 0.46 9.47 7.84 71.23 0.56 10.03 16 15 O -0.53 -14.91 15.17 27.01 0.41 -14.50 16 16 C -0.14 -1.44 5.48 29.85 0.16 -1.27 16 17 C 0.17 2.04 2.76 29.85 0.08 2.12 16 18 H 0.11 1.58 7.86 -2.39 -0.02 1.56 16 19 O -0.56 -9.25 12.37 -135.17 -1.67 -10.93 16 20 C -0.09 -0.91 5.00 -19.87 -0.10 -1.01 16 21 C -0.12 -0.89 9.68 22.27 0.22 -0.68 16 22 C -0.09 -0.55 10.04 22.26 0.22 -0.33 16 23 C -0.16 -1.44 10.03 22.31 0.22 -1.21 16 24 C 0.08 0.98 7.30 22.38 0.16 1.15 16 25 F -0.15 -2.38 17.27 44.97 0.78 -1.60 16 26 C -0.15 -1.62 9.31 22.31 0.21 -1.41 16 27 H 0.28 15.65 8.31 -92.71 -0.77 14.88 16 28 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 29 H 0.07 2.62 8.14 -2.40 -0.02 2.60 16 30 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 31 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 32 H 0.07 1.84 8.13 -2.39 -0.02 1.82 16 33 H 0.07 1.81 8.13 -2.38 -0.02 1.79 16 34 H 0.14 0.83 8.14 -2.38 -0.02 0.82 16 35 H 0.13 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.38 3.42 7.40 -74.06 -0.55 2.88 16 37 H 0.15 0.55 8.06 -2.91 -0.02 0.53 16 38 H 0.16 0.18 8.06 -2.91 -0.02 0.15 16 39 H 0.15 0.89 8.06 -2.91 -0.02 0.86 16 40 H 0.15 1.09 6.62 -2.91 -0.02 1.08 16 Total: -1.00 -75.61 364.32 4.44 -71.17 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: 0.48 Total: 8.65 kcal Atomic # 6 Polarization: -26.33 SS G_CDS: 3.86 Total: -22.47 kcal Atomic # 7 Polarization: -56.62 SS G_CDS: 0.30 Total: -56.31 kcal Atomic # 8 Polarization: -32.29 SS G_CDS: -1.79 Total: -34.08 kcal Atomic # 9 Polarization: -2.38 SS G_CDS: 0.78 Total: -1.60 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 1.90 Total: 45.37 kcal Atomic # 16 Polarization: -9.63 SS G_CDS: -1.10 Total: -10.72 kcal Total: -75.61 4.44 -71.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805517440.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.196 kcal (2) G-P(sol) polarization free energy of solvation -75.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -199.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds