Wall clock time and date at job start Tue Mar 31 2020 16:44:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47269 * 2 1 4 4 O 1.45193 * 109.47544 * 120.00458 * 2 1 3 5 5 C 1.34784 * 117.00147 * 269.99995 * 4 2 1 6 6 O 1.21538 * 120.00031 * 359.97438 * 5 4 2 7 7 C 1.47283 * 120.00326 * 179.97438 * 5 4 2 8 8 C 1.39743 * 120.22369 * 359.97438 * 7 5 4 9 9 C 1.37771 * 119.93553 * 180.02562 * 8 7 5 10 10 C 1.38676 * 120.39080 * 0.02562 * 9 8 7 11 11 C 1.37900 * 120.45144 * 359.97438 * 10 9 8 12 12 C 1.39119 * 120.05560 * 359.72436 * 11 10 9 13 13 S 1.76205 * 120.19425 * 180.27312 * 12 11 10 14 14 C 1.76200 * 99.99943 * 6.86574 * 13 12 11 15 15 H 1.08000 * 120.00276 * 5.66223 * 14 13 12 16 16 C 1.38816 * 119.99960 * 185.65311 * 14 13 12 17 17 N 1.31547 * 119.99686 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00170 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47030 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.46819 * 120.00260 * 18 16 14 21 21 H 1.48494 * 109.47382 * 240.00214 * 18 16 14 22 22 C 1.50705 * 109.47051 * 240.00266 * 2 1 3 23 23 C 1.38234 * 119.99774 * 99.99711 * 22 2 1 24 24 C 1.38231 * 119.99996 * 179.97438 * 23 22 2 25 25 C 1.38242 * 119.99917 * 359.97438 * 24 23 22 26 26 C 1.38230 * 119.99692 * 0.02562 * 25 24 23 27 27 C 1.38231 * 120.00467 * 0.06374 * 26 25 24 28 28 H 1.08995 * 109.47100 * 59.99420 * 1 2 3 29 29 H 1.09001 * 109.46784 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47005 * 299.99377 * 1 2 3 31 31 H 1.08002 * 120.02795 * 0.02562 * 8 7 5 32 32 H 1.08004 * 119.80551 * 180.02562 * 9 8 7 33 33 H 1.08005 * 119.77512 * 179.97438 * 10 9 8 34 34 H 1.08006 * 119.97560 * 180.02562 * 11 10 9 35 35 H 0.97004 * 119.99692 * 179.97438 * 17 16 14 36 36 H 1.07998 * 120.00271 * 359.97438 * 23 22 2 37 37 H 1.08006 * 120.00643 * 180.02562 * 24 23 22 38 38 H 1.07998 * 120.00001 * 179.72169 * 25 24 23 39 39 H 1.08008 * 119.99844 * 179.97438 * 26 25 24 40 40 H 1.07999 * 120.00498 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0141 -0.6845 1.1854 5 6 2.2181 0.0670 2.2856 6 8 1.9979 1.2618 2.2547 7 6 2.7079 -0.5598 3.5251 8 6 2.9622 -1.9333 3.5660 9 6 3.4198 -2.5134 4.7288 10 6 3.6299 -1.7423 5.8621 11 6 3.3842 -0.3855 5.8397 12 6 2.9278 0.2207 4.6737 13 16 2.6195 1.9552 4.6389 14 6 3.2405 2.4082 6.2244 15 1 3.7375 1.6730 6.8399 16 6 3.0912 3.7102 6.6822 17 7 2.4856 4.6056 5.9326 18 14 3.7489 4.1903 8.3634 19 1 4.3823 3.0092 9.0029 20 1 4.7569 5.2700 8.2106 21 1 2.6308 4.6735 9.2128 22 6 2.0323 -0.7104 -1.2305 23 6 2.4586 0.0195 -2.3243 24 6 2.9199 -0.6320 -3.4528 25 6 2.9554 -2.0135 -3.4874 26 6 2.5290 -2.7433 -2.3936 27 6 2.0660 -2.0919 -1.2658 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 2.8001 -2.5393 2.6869 32 1 3.6160 -3.5751 4.7579 33 1 3.9884 -2.2075 6.7685 34 1 3.5509 0.2078 6.7266 35 1 2.3809 5.5152 6.2527 36 1 2.4313 1.0988 -2.2972 37 1 3.2534 -0.0618 -4.3073 38 1 3.3115 -2.5226 -4.3707 39 1 2.5563 -3.8227 -2.4207 40 1 1.7333 -2.6620 -0.4110 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000811020197.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:44:59 Heat of formation + Delta-G solvation = -36.486241 kcal Electronic energy + Delta-G solvation = -24215.813606 eV Core-core repulsion = 20665.598176 eV Total energy + Delta-G solvation = -3550.215430 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.092 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.23691 -39.15116 -37.85625 -36.02225 -33.00990 -32.82876 -31.01110 -30.68650 -30.34901 -29.24107 -25.90034 -24.67468 -23.37839 -22.68555 -21.99974 -21.07913 -20.10516 -18.19418 -17.34274 -17.19834 -16.38820 -15.81992 -15.52475 -15.33110 -15.04253 -14.78594 -14.30167 -14.11061 -13.78392 -13.49880 -13.36536 -13.23340 -13.00881 -12.94962 -12.51015 -12.20225 -11.99658 -11.69226 -11.51964 -11.26276 -11.25825 -11.21093 -10.95710 -10.79070 -10.38854 -10.35333 -10.11504 -9.80619 -9.58147 -9.02841 -8.88470 -8.80001 -8.41720 -8.25747 -6.64565 -6.54111 -4.25563 1.17275 1.29790 1.36929 1.99969 3.03061 3.06322 3.07829 3.16696 3.22013 3.34499 3.69650 3.99096 4.39240 4.56191 4.78544 4.86878 4.87961 5.01245 5.05955 5.11227 5.22093 5.30374 5.39354 5.44799 5.46329 5.58841 5.70027 5.78599 5.87687 5.90528 6.00449 6.12750 6.14227 6.31032 6.32941 6.38665 6.47889 6.59051 6.84291 6.85979 6.87647 7.05623 7.08676 7.39122 7.54181 8.09573 8.41724 8.92629 10.49508 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.017518 B = 0.003127 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.944620 B = 8952.841479 C =10046.892103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.127 3.873 3 H 0.094 0.906 4 O -0.352 6.352 5 C 0.497 3.503 6 O -0.484 6.484 7 C -0.166 4.166 8 C -0.038 4.038 9 C -0.191 4.191 10 C -0.069 4.069 11 C -0.156 4.156 12 C -0.054 4.054 13 S 0.184 5.816 14 C -0.594 4.594 15 H 0.094 0.906 16 C 0.083 3.917 17 N -0.856 5.856 18 Si 0.921 3.079 19 H -0.267 1.267 20 H -0.276 1.276 21 H -0.276 1.276 22 C -0.083 4.083 23 C -0.108 4.108 24 C -0.122 4.122 25 C -0.121 4.121 26 C -0.124 4.124 27 C -0.092 4.092 28 H 0.072 0.928 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.123 0.877 32 H 0.114 0.886 33 H 0.114 0.886 34 H 0.141 0.859 35 H 0.275 0.725 36 H 0.124 0.876 37 H 0.122 0.878 38 H 0.120 0.880 39 H 0.122 0.878 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.793 -12.901 -13.247 18.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.072 3.928 3 H 0.112 0.888 4 O -0.271 6.271 5 C 0.343 3.657 6 O -0.373 6.373 7 C -0.179 4.179 8 C -0.058 4.058 9 C -0.215 4.215 10 C -0.091 4.091 11 C -0.181 4.181 12 C -0.174 4.174 13 S 0.449 5.551 14 C -0.740 4.740 15 H 0.111 0.889 16 C -0.128 4.128 17 N -0.489 5.489 18 Si 0.747 3.253 19 H -0.191 1.191 20 H -0.202 1.202 21 H -0.202 1.202 22 C -0.083 4.083 23 C -0.126 4.126 24 C -0.140 4.140 25 C -0.139 4.139 26 C -0.142 4.142 27 C -0.110 4.110 28 H 0.091 0.909 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.141 0.859 32 H 0.132 0.868 33 H 0.132 0.868 34 H 0.159 0.841 35 H 0.085 0.915 36 H 0.142 0.858 37 H 0.140 0.860 38 H 0.138 0.862 39 H 0.140 0.860 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -1.487 -11.177 -14.093 18.049 hybrid contribution 0.941 -0.428 1.945 2.202 sum -0.546 -11.605 -12.148 16.809 Atomic orbital electron populations 1.22162 0.93519 1.02985 1.03273 1.21317 0.94364 0.96557 0.80590 0.88800 1.86588 1.78246 1.42156 1.20087 1.21186 0.75859 0.85293 0.83404 1.90833 1.47947 1.15389 1.83138 1.18293 1.14890 0.94002 0.90698 1.21081 0.94246 0.92898 0.97548 1.20710 1.07775 0.99252 0.93800 1.21152 0.96549 0.93839 0.97570 1.21399 1.03493 0.94890 0.98301 1.23072 0.97161 1.03149 0.94013 1.84671 1.63775 0.89613 1.17036 1.24069 1.43965 0.99445 1.06544 0.88880 1.25124 0.93745 0.95215 0.98707 1.69977 1.37942 1.04001 1.36958 0.86062 0.78847 0.78934 0.81502 1.19065 1.20166 1.20159 1.19710 0.99984 0.94241 0.94383 1.21021 0.98352 1.00056 0.93136 1.21090 1.00229 0.94652 0.98065 1.21172 0.99941 0.94238 0.98517 1.21171 0.99521 0.99927 0.93584 1.21058 0.98155 0.93830 0.97952 0.90947 0.91661 0.91126 0.85921 0.86796 0.86798 0.84132 0.91460 0.85764 0.85952 0.86205 0.86001 0.85375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.04 9.53 37.16 0.35 -1.68 16 2 C 0.13 1.82 2.77 -27.88 -0.08 1.74 16 3 H 0.09 1.46 7.02 -51.93 -0.36 1.10 16 4 O -0.35 -5.86 8.46 -40.72 -0.34 -6.20 16 5 C 0.50 9.98 7.85 34.41 0.27 10.25 16 6 O -0.48 -11.01 13.03 -19.29 -0.25 -11.26 16 7 C -0.17 -3.36 5.89 -104.77 -0.62 -3.98 16 8 C -0.04 -0.64 9.61 -39.19 -0.38 -1.02 16 9 C -0.19 -2.99 10.02 -39.59 -0.40 -3.39 16 10 C -0.07 -1.16 10.02 -39.54 -0.40 -1.56 16 11 C -0.16 -3.21 9.22 -39.38 -0.36 -3.58 16 12 C -0.05 -1.23 6.15 -38.37 -0.24 -1.47 16 13 S 0.18 4.84 18.56 -107.50 -2.00 2.84 16 14 C -0.59 -16.04 9.00 30.95 0.28 -15.77 16 15 H 0.09 2.39 4.98 -52.49 -0.26 2.12 16 16 C 0.08 2.24 5.49 -17.46 -0.10 2.14 16 17 N -0.86 -24.20 13.22 55.49 0.73 -23.47 16 18 Si 0.92 20.31 29.55 -169.99 -5.02 15.28 16 19 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 20 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 21 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 22 C -0.08 -1.04 4.98 -104.62 -0.52 -1.56 16 23 C -0.11 -1.20 9.67 -39.59 -0.38 -1.58 16 24 C -0.12 -1.18 10.05 -39.58 -0.40 -1.58 16 25 C -0.12 -1.11 10.05 -39.58 -0.40 -1.51 16 26 C -0.12 -1.21 10.05 -39.59 -0.40 -1.61 16 27 C -0.09 -1.06 9.36 -39.59 -0.37 -1.43 16 28 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.12 1.76 7.61 -52.49 -0.40 1.36 16 32 H 0.11 1.41 8.06 -52.48 -0.42 0.99 16 33 H 0.11 1.57 8.06 -52.48 -0.42 1.15 16 34 H 0.14 2.99 5.04 -52.48 -0.26 2.73 16 35 H 0.28 7.18 8.31 -40.82 -0.34 6.84 16 36 H 0.12 1.24 8.04 -52.49 -0.42 0.81 16 37 H 0.12 0.91 8.06 -52.48 -0.42 0.48 16 38 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 39 H 0.12 0.92 8.06 -52.48 -0.42 0.49 16 40 H 0.13 1.41 7.78 -52.49 -0.41 1.00 16 LS Contribution 357.34 15.07 5.38 5.38 Total: -1.00 -30.51 357.34 -10.26 -40.76 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -4.64 Total: 4.22 kcal Atomic # 6 Polarization: -23.44 SS G_CDS: -4.12 Total: -27.57 kcal Atomic # 7 Polarization: -24.20 SS G_CDS: 0.73 Total: -23.47 kcal Atomic # 8 Polarization: -16.87 SS G_CDS: -0.60 Total: -17.46 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.28 kcal Atomic # 16 Polarization: 4.84 SS G_CDS: -2.00 Total: 2.84 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.51 -10.26 -40.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000811020197.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.279 kcal (2) G-P(sol) polarization free energy of solvation -30.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds