Wall clock time and date at job start Tue Mar 31 2020 16:44:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47269 * 2 1 4 4 O 1.45193 * 109.47544 * 120.00458 * 2 1 3 5 5 C 1.34784 * 117.00147 * 269.99995 * 4 2 1 6 6 O 1.21538 * 120.00031 * 359.97438 * 5 4 2 7 7 C 1.47283 * 120.00326 * 179.97438 * 5 4 2 8 8 C 1.39743 * 120.22369 * 359.97438 * 7 5 4 9 9 C 1.37771 * 119.93553 * 180.02562 * 8 7 5 10 10 C 1.38676 * 120.39080 * 0.02562 * 9 8 7 11 11 C 1.37900 * 120.45144 * 359.97438 * 10 9 8 12 12 C 1.39119 * 120.05560 * 359.72436 * 11 10 9 13 13 S 1.76205 * 120.19425 * 180.27312 * 12 11 10 14 14 C 1.76200 * 99.99943 * 6.86574 * 13 12 11 15 15 H 1.08000 * 120.00276 * 5.66223 * 14 13 12 16 16 C 1.38816 * 119.99960 * 185.65311 * 14 13 12 17 17 N 1.31547 * 119.99686 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00170 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47030 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.46819 * 120.00260 * 18 16 14 21 21 H 1.48494 * 109.47382 * 240.00214 * 18 16 14 22 22 C 1.50705 * 109.47051 * 240.00266 * 2 1 3 23 23 C 1.38234 * 119.99774 * 99.99711 * 22 2 1 24 24 C 1.38231 * 119.99996 * 179.97438 * 23 22 2 25 25 C 1.38242 * 119.99917 * 359.97438 * 24 23 22 26 26 C 1.38230 * 119.99692 * 0.02562 * 25 24 23 27 27 C 1.38231 * 120.00467 * 0.06374 * 26 25 24 28 28 H 1.08995 * 109.47100 * 59.99420 * 1 2 3 29 29 H 1.09001 * 109.46784 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47005 * 299.99377 * 1 2 3 31 31 H 1.08002 * 120.02795 * 0.02562 * 8 7 5 32 32 H 1.08004 * 119.80551 * 180.02562 * 9 8 7 33 33 H 1.08005 * 119.77512 * 179.97438 * 10 9 8 34 34 H 1.08006 * 119.97560 * 180.02562 * 11 10 9 35 35 H 0.97004 * 119.99692 * 179.97438 * 17 16 14 36 36 H 1.07998 * 120.00271 * 359.97438 * 23 22 2 37 37 H 1.08006 * 120.00643 * 180.02562 * 24 23 22 38 38 H 1.07998 * 120.00001 * 179.72169 * 25 24 23 39 39 H 1.08008 * 119.99844 * 179.97438 * 26 25 24 40 40 H 1.07999 * 120.00498 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0141 -0.6845 1.1854 5 6 2.2181 0.0670 2.2856 6 8 1.9979 1.2618 2.2547 7 6 2.7079 -0.5598 3.5251 8 6 2.9622 -1.9333 3.5660 9 6 3.4198 -2.5134 4.7288 10 6 3.6299 -1.7423 5.8621 11 6 3.3842 -0.3855 5.8397 12 6 2.9278 0.2207 4.6737 13 16 2.6195 1.9552 4.6389 14 6 3.2405 2.4082 6.2244 15 1 3.7375 1.6730 6.8399 16 6 3.0912 3.7102 6.6822 17 7 2.4856 4.6056 5.9326 18 14 3.7489 4.1903 8.3634 19 1 4.3823 3.0092 9.0029 20 1 4.7569 5.2700 8.2106 21 1 2.6308 4.6735 9.2128 22 6 2.0323 -0.7104 -1.2305 23 6 2.4586 0.0195 -2.3243 24 6 2.9199 -0.6320 -3.4528 25 6 2.9554 -2.0135 -3.4874 26 6 2.5290 -2.7433 -2.3936 27 6 2.0660 -2.0919 -1.2658 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 2.8001 -2.5393 2.6869 32 1 3.6160 -3.5751 4.7579 33 1 3.9884 -2.2075 6.7685 34 1 3.5509 0.2078 6.7266 35 1 2.3809 5.5152 6.2527 36 1 2.4313 1.0988 -2.2972 37 1 3.2534 -0.0618 -4.3073 38 1 3.3115 -2.5226 -4.3707 39 1 2.5563 -3.8227 -2.4207 40 1 1.7333 -2.6620 -0.4110 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000811020197.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:44:58 Heat of formation + Delta-G solvation = -50.964604 kcal Electronic energy + Delta-G solvation = -24216.441435 eV Core-core repulsion = 20665.598176 eV Total energy + Delta-G solvation = -3550.843259 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.092 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.64140 -40.16814 -39.29818 -37.48674 -34.80324 -34.11214 -32.17629 -31.87543 -31.78604 -30.19239 -27.88246 -26.00695 -24.54374 -23.59635 -23.43949 -22.29294 -21.40521 -19.95186 -18.91449 -18.34596 -17.68212 -17.23598 -16.99442 -16.92844 -16.23154 -15.91674 -15.63071 -15.45898 -15.13034 -14.78047 -14.64529 -14.51119 -14.25742 -14.11822 -13.71998 -13.41472 -13.30858 -13.17187 -13.02002 -12.92638 -12.62927 -12.51770 -12.12333 -12.05154 -11.84247 -11.78082 -11.56772 -11.48578 -11.39428 -10.47416 -10.12779 -9.91751 -9.81892 -9.71889 -8.55421 -8.49483 -6.29802 -0.16387 0.33427 0.49854 0.50709 1.25014 1.35390 1.44238 1.55805 1.67060 1.70959 2.18243 2.82670 2.87213 2.95677 3.17955 3.53587 3.78889 3.91058 4.01816 4.09596 4.19111 4.20524 4.24271 4.31216 4.51331 4.60608 4.61517 4.62957 4.74130 4.75148 4.81568 5.01200 5.08463 5.09581 5.16657 5.33047 5.35931 5.44409 5.53168 5.57793 5.62542 5.63557 5.70157 6.06112 6.09659 6.12845 6.86469 6.92565 8.56872 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.017518 B = 0.003127 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.944620 B = 8952.841479 C =10046.892103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.123 3.877 3 H 0.071 0.929 4 O -0.340 6.340 5 C 0.497 3.503 6 O -0.518 6.518 7 C -0.175 4.175 8 C -0.035 4.035 9 C -0.161 4.161 10 C -0.056 4.056 11 C -0.175 4.175 12 C -0.066 4.066 13 S 0.068 5.932 14 C -0.600 4.600 15 H 0.098 0.902 16 C 0.025 3.975 17 N -0.904 5.904 18 Si 0.995 3.005 19 H -0.255 1.255 20 H -0.271 1.271 21 H -0.270 1.270 22 C -0.102 4.102 23 C -0.123 4.123 24 C -0.124 4.124 25 C -0.118 4.118 26 C -0.124 4.124 27 C -0.104 4.104 28 H 0.091 0.909 29 H 0.079 0.921 30 H 0.046 0.954 31 H 0.157 0.843 32 H 0.168 0.832 33 H 0.157 0.843 34 H 0.126 0.874 35 H 0.277 0.723 36 H 0.125 0.875 37 H 0.145 0.855 38 H 0.150 0.850 39 H 0.148 0.852 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.443 -17.553 -13.910 22.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.069 3.931 3 H 0.089 0.911 4 O -0.258 6.258 5 C 0.344 3.656 6 O -0.409 6.409 7 C -0.186 4.186 8 C -0.055 4.055 9 C -0.183 4.183 10 C -0.077 4.077 11 C -0.200 4.200 12 C -0.184 4.184 13 S 0.327 5.673 14 C -0.746 4.746 15 H 0.116 0.884 16 C -0.181 4.181 17 N -0.538 5.538 18 Si 0.816 3.184 19 H -0.179 1.179 20 H -0.196 1.196 21 H -0.195 1.195 22 C -0.102 4.102 23 C -0.141 4.141 24 C -0.142 4.142 25 C -0.136 4.136 26 C -0.142 4.142 27 C -0.122 4.122 28 H 0.110 0.890 29 H 0.098 0.902 30 H 0.065 0.935 31 H 0.174 0.826 32 H 0.186 0.814 33 H 0.174 0.826 34 H 0.144 0.856 35 H 0.086 0.914 36 H 0.143 0.857 37 H 0.163 0.837 38 H 0.167 0.833 39 H 0.166 0.834 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -0.242 -15.941 -14.786 21.744 hybrid contribution 0.582 0.595 1.905 2.079 sum 0.341 -15.346 -12.881 20.039 Atomic orbital electron populations 1.22128 0.92331 1.03825 1.03026 1.21509 0.95417 0.95696 0.80515 0.91114 1.86553 1.77787 1.41564 1.19914 1.21375 0.74996 0.84967 0.84283 1.90838 1.49206 1.17082 1.83755 1.18658 1.14326 0.95623 0.89999 1.21525 0.93124 0.91168 0.99644 1.21370 1.03401 1.01593 0.91969 1.21638 0.94306 0.91933 0.99827 1.21459 1.04611 0.96833 0.97129 1.22975 0.98778 1.00646 0.95953 1.84848 1.68632 0.94695 1.19079 1.24249 1.44199 0.99984 1.06203 0.88391 1.26171 0.94038 0.95032 1.02824 1.70125 1.40181 1.04394 1.39129 0.84957 0.78267 0.78790 0.76346 1.17852 1.19649 1.19469 1.19606 1.01989 0.94960 0.93696 1.21181 0.98900 1.00373 0.93642 1.21409 0.99389 0.95397 0.98032 1.21583 0.98611 0.94064 0.99301 1.21494 0.98449 1.01341 0.92890 1.21173 0.98793 0.93239 0.98982 0.89029 0.90158 0.93512 0.82587 0.81440 0.82589 0.85633 0.91397 0.85737 0.83692 0.83251 0.83417 0.85191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.03 9.53 71.98 0.69 -3.34 16 2 C 0.12 3.65 2.77 29.85 0.08 3.74 16 3 H 0.07 2.41 7.02 -2.38 -0.02 2.39 16 4 O -0.34 -11.41 8.46 -56.96 -0.48 -11.89 16 5 C 0.50 20.78 7.85 70.20 0.55 21.33 16 6 O -0.52 -25.56 13.03 19.71 0.26 -25.31 16 7 C -0.17 -7.09 5.89 -19.96 -0.12 -7.21 16 8 C -0.04 -1.06 9.61 22.52 0.22 -0.84 16 9 C -0.16 -4.10 10.02 22.26 0.22 -3.87 16 10 C -0.06 -1.66 10.02 22.29 0.22 -1.43 16 11 C -0.18 -7.16 9.22 22.40 0.21 -6.96 16 12 C -0.07 -3.08 6.15 23.06 0.14 -2.94 16 13 S 0.07 3.86 18.56 -56.49 -1.05 2.81 16 14 C -0.60 -34.42 9.00 67.96 0.61 -33.81 16 15 H 0.10 5.27 4.98 -2.91 -0.01 5.26 16 16 C 0.03 1.43 5.49 84.87 0.47 1.89 16 17 N -0.90 -54.55 13.22 21.65 0.29 -54.26 16 18 Si 1.00 43.19 29.55 68.60 2.03 45.21 16 19 H -0.26 -10.39 7.11 99.48 0.71 -9.69 16 20 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 21 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 22 C -0.10 -2.51 4.98 -19.86 -0.10 -2.61 16 23 C -0.12 -2.68 9.67 22.27 0.22 -2.46 16 24 C -0.12 -2.12 10.05 22.27 0.22 -1.90 16 25 C -0.12 -1.76 10.05 22.27 0.22 -1.54 16 26 C -0.12 -2.02 10.05 22.27 0.22 -1.80 16 27 C -0.10 -2.18 9.36 22.27 0.21 -1.98 16 28 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.16 3.70 7.61 -2.91 -0.02 3.68 16 32 H 0.17 2.71 8.06 -2.91 -0.02 2.68 16 33 H 0.16 3.38 8.06 -2.91 -0.02 3.36 16 34 H 0.13 5.47 5.04 -2.91 -0.01 5.46 16 35 H 0.28 15.37 8.31 -92.71 -0.77 14.60 16 36 H 0.12 2.57 8.04 -2.91 -0.02 2.55 16 37 H 0.15 1.75 8.06 -2.91 -0.02 1.73 16 38 H 0.15 1.35 8.06 -2.91 -0.02 1.32 16 39 H 0.15 1.60 8.06 -2.91 -0.02 1.57 16 40 H 0.13 2.58 7.78 -2.91 -0.02 2.56 16 Total: -1.00 -74.23 357.34 6.39 -67.84 By element: Atomic # 1 Polarization: 20.28 SS G_CDS: 1.06 Total: 21.34 kcal Atomic # 6 Polarization: -50.03 SS G_CDS: 4.29 Total: -45.74 kcal Atomic # 7 Polarization: -54.55 SS G_CDS: 0.29 Total: -54.26 kcal Atomic # 8 Polarization: -36.98 SS G_CDS: -0.22 Total: -37.20 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.21 kcal Atomic # 16 Polarization: 3.86 SS G_CDS: -1.05 Total: 2.81 kcal Total: -74.23 6.39 -67.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000811020197.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.878 kcal (2) G-P(sol) polarization free energy of solvation -74.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds