Wall clock time and date at job start Tue Mar 31 2020 14:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 119.99908 * 2 1 4 4 H 1.48504 * 109.47383 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47001 * 300.00171 * 3 2 1 6 6 H 1.48494 * 109.47169 * 60.00294 * 3 2 1 7 7 C 1.37873 * 119.99894 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99956 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00301 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47492 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.47447 * 180.02562 * 10 9 7 12 12 O 1.20825 * 120.00092 * 359.97438 * 11 10 9 13 13 O 1.34233 * 120.00247 * 180.02562 * 11 10 9 14 14 C 1.45196 * 117.00345 * 179.97438 * 13 11 10 15 15 C 1.50703 * 109.47507 * 179.97438 * 14 13 11 16 16 O 1.21256 * 119.99587 * 359.97438 * 15 14 13 17 17 C 1.47169 * 120.00121 * 179.97438 * 15 14 13 18 18 C 1.39882 * 120.14987 * 359.97367 * 17 15 14 19 19 C 1.37887 * 119.94274 * 180.02562 * 18 17 15 20 20 C 1.38341 * 120.23313 * 359.74249 * 19 18 17 21 21 C 1.38852 * 120.29079 * 0.51565 * 20 19 18 22 22 O 1.35910 * 119.96721 * 179.76030 * 21 20 19 23 23 C 1.42903 * 117.00276 * 359.72784 * 22 21 20 24 24 F 1.39904 * 109.46926 * 59.99529 * 23 22 21 25 25 F 1.39901 * 109.46899 * 300.00073 * 23 22 21 26 26 C 1.38423 * 120.06117 * 359.48637 * 21 20 19 27 27 H 0.97000 * 119.99999 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.47390 * 60.00338 * 9 7 2 29 29 H 1.08999 * 109.47673 * 299.99800 * 9 7 2 30 30 H 1.08997 * 109.47412 * 59.99643 * 10 9 7 31 31 H 1.09007 * 109.46721 * 299.99961 * 10 9 7 32 32 H 1.09000 * 109.47511 * 59.99281 * 14 13 11 33 33 H 1.09007 * 109.46428 * 299.99587 * 14 13 11 34 34 H 1.07999 * 120.02256 * 0.02562 * 18 17 15 35 35 H 1.07995 * 119.88763 * 180.02562 * 19 18 17 36 36 H 1.07996 * 119.85052 * 180.27907 * 20 19 18 37 37 H 1.09002 * 109.47382 * 179.97438 * 23 22 21 38 38 H 1.07999 * 120.11983 * 180.23383 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4918 -4.9671 -0.0012 12 8 0.2836 -4.9672 -0.0011 13 8 2.1630 -6.1296 -0.0008 14 6 1.3722 -7.3474 -0.0008 15 6 2.2902 -8.5426 -0.0010 16 8 3.4923 -8.3836 -0.0015 17 6 1.7277 -9.9025 -0.0005 18 6 0.3414 -10.0894 0.0006 19 6 -0.1810 -11.3655 0.0016 20 6 0.6612 -12.4630 -0.0039 21 6 2.0387 -12.2887 0.0003 22 8 2.8600 -13.3716 -0.0002 23 6 2.2376 -14.6580 0.0008 24 9 1.4396 -14.7908 -1.1406 25 9 1.4421 -14.7901 1.1440 26 6 2.5763 -11.0131 -0.0006 27 1 -0.4850 0.8400 0.0004 28 1 0.6241 -2.5567 -0.8903 29 1 0.6248 -2.5572 0.8897 30 1 2.8720 -3.6043 0.8894 31 1 2.8719 -3.6043 -0.8906 32 1 0.7436 -7.3724 -0.8909 33 1 0.7432 -7.3721 0.8891 34 1 -0.3190 -9.2349 0.0007 35 1 -1.2514 -11.5087 0.0021 36 1 0.2454 -13.4596 -0.0077 37 1 3.0044 -15.4327 -0.0002 38 1 3.6476 -10.8765 -0.0011 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812617215.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:13 Heat of formation + Delta-G solvation = -245.555681 kcal Electronic energy + Delta-G solvation = -26045.538520 eV Core-core repulsion = 21489.274758 eV Total energy + Delta-G solvation = -4556.263762 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.100 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.95837 -47.94046 -40.85964 -40.14606 -39.24032 -37.62273 -36.09547 -33.60389 -32.05773 -31.39275 -31.11442 -28.85977 -26.75248 -25.97538 -24.19187 -23.03672 -22.18119 -20.81737 -19.92004 -19.10637 -18.63635 -18.51429 -17.58801 -16.89844 -16.86105 -16.59458 -16.32671 -15.85318 -15.30155 -15.22271 -15.13781 -14.87040 -14.51252 -14.47111 -14.42162 -14.25419 -14.09727 -13.47993 -13.42055 -13.31022 -12.45838 -12.43213 -12.26191 -12.21583 -12.10571 -11.72523 -11.23001 -10.98090 -10.63353 -10.59849 -10.18383 -10.06609 -9.95381 -9.59629 -9.57127 -9.17250 -9.05279 -8.38741 -6.02488 -4.07134 0.11144 0.78496 1.89531 1.95144 2.68508 2.73368 2.87492 3.20027 3.31012 3.38404 3.42398 3.67903 3.79744 4.02074 4.18779 4.34835 4.44364 4.45285 4.62904 4.78179 4.98700 4.98996 5.03966 5.32188 5.33265 5.44713 5.54426 5.72906 5.79331 5.88069 6.11295 6.18653 6.43981 6.54125 6.85228 7.14536 7.65508 7.71447 7.96789 8.18962 8.36236 9.00097 9.57142 11.08582 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.046758 B = 0.001709 C = 0.001667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.683347 B =16381.433291 C =16789.714500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.896 3.104 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.528 4.528 8 H 0.060 0.940 9 C 0.033 3.967 10 C -0.103 4.103 11 C 0.458 3.542 12 O -0.504 6.504 13 O -0.348 6.348 14 C 0.019 3.981 15 C 0.398 3.602 16 O -0.419 6.419 17 C -0.127 4.127 18 C -0.096 4.096 19 C -0.091 4.091 20 C -0.160 4.160 21 C 0.093 3.907 22 O -0.318 6.318 23 C 0.412 3.588 24 F -0.198 7.198 25 F -0.198 7.198 26 C -0.075 4.075 27 H 0.261 0.739 28 H 0.026 0.974 29 H 0.026 0.974 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.142 0.858 35 H 0.140 0.860 36 H 0.138 0.862 37 H 0.185 0.815 38 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.247 -33.219 0.000 33.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.724 3.276 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.566 4.566 8 H 0.078 0.922 9 C -0.004 4.004 10 C -0.140 4.140 11 C 0.302 3.698 12 O -0.391 6.391 13 O -0.266 6.266 14 C -0.056 4.056 15 C 0.272 3.728 16 O -0.291 6.291 17 C -0.129 4.129 18 C -0.114 4.114 19 C -0.109 4.109 20 C -0.179 4.179 21 C 0.050 3.950 22 O -0.236 6.236 23 C 0.321 3.679 24 F -0.180 7.180 25 F -0.180 7.180 26 C -0.093 4.093 27 H 0.071 0.929 28 H 0.045 0.955 29 H 0.045 0.955 30 H 0.113 0.887 31 H 0.113 0.887 32 H 0.123 0.877 33 H 0.123 0.877 34 H 0.160 0.840 35 H 0.157 0.843 36 H 0.156 0.844 37 H 0.201 0.799 38 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 2.530 -33.048 -0.001 33.144 hybrid contribution -0.250 0.564 0.000 0.617 sum 2.280 -32.484 -0.001 32.564 Atomic orbital electron populations 1.70002 1.06094 1.26663 1.50070 1.25021 0.94868 0.99370 0.95105 0.86475 0.80055 0.83495 0.77601 1.19623 1.20974 1.20970 1.21197 0.93177 0.90590 1.51638 0.92180 1.19038 0.93217 0.89261 0.98929 1.21803 1.00733 0.87156 1.04315 1.24937 0.87998 0.85448 0.71404 1.90637 1.15763 1.87518 1.45162 1.86673 1.40936 1.13979 1.84981 1.23112 0.94295 0.83005 1.05180 1.22168 0.89481 0.88353 0.72772 1.90582 1.16919 1.88012 1.33552 1.20084 0.94081 0.93562 1.05128 1.21565 0.93799 0.98348 0.97708 1.20977 1.00405 0.91349 0.98137 1.21830 0.91909 1.01325 1.02839 1.18658 0.89158 0.86584 1.00593 1.86655 1.35320 1.12909 1.88686 1.23421 0.85196 0.87442 0.71795 1.93109 1.77047 1.95707 1.52118 1.93110 1.77175 1.95712 1.51976 1.20597 1.01471 0.88072 0.99185 0.92903 0.95526 0.95535 0.88706 0.88716 0.87690 0.87684 0.84040 0.84267 0.84411 0.79906 0.83386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.90 13.29 55.43 0.74 -26.16 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 21.47 29.54 -169.99 -5.02 16.44 16 4 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.53 -14.75 9.11 -34.45 -0.31 -15.06 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 9 C 0.03 0.86 4.26 -27.89 -0.12 0.74 16 10 C -0.10 -2.11 5.75 -27.88 -0.16 -2.27 16 11 C 0.46 8.92 7.96 36.00 0.29 9.20 16 12 O -0.50 -10.96 15.73 -18.75 -0.29 -11.26 16 13 O -0.35 -5.90 9.75 -45.91 -0.45 -6.35 16 14 C 0.02 0.24 4.55 36.01 0.16 0.41 16 15 C 0.40 4.88 7.20 -30.68 -0.22 4.66 16 16 O -0.42 -6.47 16.49 -14.08 -0.23 -6.71 16 17 C -0.13 -1.27 5.87 -105.08 -0.62 -1.89 16 18 C -0.10 -0.76 9.47 -39.10 -0.37 -1.13 16 19 C -0.09 -0.64 10.02 -39.67 -0.40 -1.04 16 20 C -0.16 -1.27 8.26 -39.32 -0.32 -1.59 16 21 C 0.09 0.83 6.48 -39.29 -0.25 0.58 16 22 O -0.32 -2.39 10.43 -19.46 -0.20 -2.59 16 23 C 0.41 1.85 5.98 101.05 0.60 2.45 16 24 F -0.20 -1.20 15.56 2.25 0.04 -1.17 16 25 F -0.20 -1.20 15.59 2.25 0.04 -1.17 16 26 C -0.07 -0.74 9.54 -38.94 -0.37 -1.11 16 27 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 28 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 29 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 30 H 0.09 1.80 8.14 -51.93 -0.42 1.38 16 31 H 0.09 1.80 8.14 -51.92 -0.42 1.38 16 32 H 0.11 1.16 8.08 -51.93 -0.42 0.74 16 33 H 0.11 1.16 8.08 -51.93 -0.42 0.74 16 34 H 0.14 0.86 7.05 -52.49 -0.37 0.49 16 35 H 0.14 0.64 8.06 -52.49 -0.42 0.22 16 36 H 0.14 0.96 5.07 -52.49 -0.27 0.69 16 37 H 0.18 -0.07 8.14 -51.93 -0.42 -0.49 16 38 H 0.15 1.46 7.65 -52.49 -0.40 1.06 16 LS Contribution 348.25 15.07 5.25 5.25 Total: -1.00 -35.37 348.25 -6.29 -41.66 By element: Atomic # 1 Polarization: 0.48 SS G_CDS: -3.95 Total: -3.47 kcal Atomic # 6 Polarization: -2.29 SS G_CDS: -2.19 Total: -4.48 kcal Atomic # 7 Polarization: -26.90 SS G_CDS: 0.74 Total: -26.16 kcal Atomic # 8 Polarization: -25.73 SS G_CDS: -1.18 Total: -26.91 kcal Atomic # 9 Polarization: -2.40 SS G_CDS: 0.07 Total: -2.33 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -35.37 -6.29 -41.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812617215.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -203.898 kcal (2) G-P(sol) polarization free energy of solvation -35.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -239.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -245.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds