Wall clock time and date at job start Tue Mar 31 2020 14:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 119.99908 * 2 1 4 4 H 1.48504 * 109.47383 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47001 * 300.00171 * 3 2 1 6 6 H 1.48494 * 109.47169 * 60.00294 * 3 2 1 7 7 C 1.37873 * 119.99894 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99956 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00301 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47492 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.47447 * 180.02562 * 10 9 7 12 12 O 1.20825 * 120.00092 * 359.97438 * 11 10 9 13 13 O 1.34233 * 120.00247 * 180.02562 * 11 10 9 14 14 C 1.45196 * 117.00345 * 179.97438 * 13 11 10 15 15 C 1.50703 * 109.47507 * 179.97438 * 14 13 11 16 16 O 1.21256 * 119.99587 * 359.97438 * 15 14 13 17 17 C 1.47169 * 120.00121 * 179.97438 * 15 14 13 18 18 C 1.39882 * 120.14987 * 359.97367 * 17 15 14 19 19 C 1.37887 * 119.94274 * 180.02562 * 18 17 15 20 20 C 1.38341 * 120.23313 * 359.74249 * 19 18 17 21 21 C 1.38852 * 120.29079 * 0.51565 * 20 19 18 22 22 O 1.35910 * 119.96721 * 179.76030 * 21 20 19 23 23 C 1.42903 * 117.00276 * 359.72784 * 22 21 20 24 24 F 1.39904 * 109.46926 * 59.99529 * 23 22 21 25 25 F 1.39901 * 109.46899 * 300.00073 * 23 22 21 26 26 C 1.38423 * 120.06117 * 359.48637 * 21 20 19 27 27 H 0.97000 * 119.99999 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.47390 * 60.00338 * 9 7 2 29 29 H 1.08999 * 109.47673 * 299.99800 * 9 7 2 30 30 H 1.08997 * 109.47412 * 59.99643 * 10 9 7 31 31 H 1.09007 * 109.46721 * 299.99961 * 10 9 7 32 32 H 1.09000 * 109.47511 * 59.99281 * 14 13 11 33 33 H 1.09007 * 109.46428 * 299.99587 * 14 13 11 34 34 H 1.07999 * 120.02256 * 0.02562 * 18 17 15 35 35 H 1.07995 * 119.88763 * 180.02562 * 19 18 17 36 36 H 1.07996 * 119.85052 * 180.27907 * 20 19 18 37 37 H 1.09002 * 109.47382 * 179.97438 * 23 22 21 38 38 H 1.07999 * 120.11983 * 180.23383 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4918 -4.9671 -0.0012 12 8 0.2836 -4.9672 -0.0011 13 8 2.1630 -6.1296 -0.0008 14 6 1.3722 -7.3474 -0.0008 15 6 2.2902 -8.5426 -0.0010 16 8 3.4923 -8.3836 -0.0015 17 6 1.7277 -9.9025 -0.0005 18 6 0.3414 -10.0894 0.0006 19 6 -0.1810 -11.3655 0.0016 20 6 0.6612 -12.4630 -0.0039 21 6 2.0387 -12.2887 0.0003 22 8 2.8600 -13.3716 -0.0002 23 6 2.2376 -14.6580 0.0008 24 9 1.4396 -14.7908 -1.1406 25 9 1.4421 -14.7901 1.1440 26 6 2.5763 -11.0131 -0.0006 27 1 -0.4850 0.8400 0.0004 28 1 0.6241 -2.5567 -0.8903 29 1 0.6248 -2.5572 0.8897 30 1 2.8720 -3.6043 0.8894 31 1 2.8719 -3.6043 -0.8906 32 1 0.7436 -7.3724 -0.8909 33 1 0.7432 -7.3721 0.8891 34 1 -0.3190 -9.2349 0.0007 35 1 -1.2514 -11.5087 0.0021 36 1 0.2454 -13.4596 -0.0077 37 1 3.0044 -15.4327 -0.0002 38 1 3.6476 -10.8765 -0.0011 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812617215.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:12 Heat of formation + Delta-G solvation = -266.342347 kcal Electronic energy + Delta-G solvation = -26046.439898 eV Core-core repulsion = 21489.274758 eV Total energy + Delta-G solvation = -4557.165139 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.100 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.36058 -48.35075 -41.84491 -41.25309 -40.22077 -38.30610 -37.55275 -35.64721 -33.23202 -32.76777 -31.96796 -29.92202 -27.85866 -27.17127 -25.14294 -23.97696 -23.59624 -21.60126 -21.50828 -19.76067 -19.21813 -19.06832 -18.92925 -18.29111 -17.90500 -17.74680 -17.45778 -16.94338 -16.47859 -16.26033 -16.10098 -15.93517 -15.69971 -15.30252 -15.04054 -14.92685 -14.86788 -14.67859 -14.29480 -14.06747 -13.87956 -13.80387 -13.71198 -13.17065 -13.04803 -12.85709 -12.62670 -12.48866 -12.37376 -12.02183 -11.88086 -11.75970 -11.55227 -11.28816 -11.00003 -10.57714 -10.28277 -9.68143 -8.19810 -6.32905 -0.65053 0.15265 1.09572 1.18726 1.30768 1.44581 1.44680 1.57567 1.60568 2.42924 2.49548 2.52128 2.77602 3.14226 3.43634 3.56168 3.65656 3.70415 3.80958 3.90503 4.00973 4.01338 4.10362 4.12614 4.30742 4.44729 4.46421 4.68558 4.87587 4.94376 5.07258 5.16996 5.24804 5.29956 5.47995 5.56550 5.81397 5.84382 6.14079 6.19394 6.73405 6.85687 7.37146 8.92877 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.046758 B = 0.001709 C = 0.001667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.683347 B =16381.433291 C =16789.714500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.003 4.003 3 Si 0.973 3.027 4 H -0.256 1.256 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.545 4.545 8 H 0.075 0.925 9 C 0.039 3.961 10 C -0.097 4.097 11 C 0.470 3.530 12 O -0.533 6.533 13 O -0.351 6.351 14 C 0.009 3.991 15 C 0.409 3.591 16 O -0.460 6.460 17 C -0.140 4.140 18 C -0.091 4.091 19 C -0.087 4.087 20 C -0.161 4.161 21 C 0.085 3.915 22 O -0.329 6.329 23 C 0.406 3.594 24 F -0.208 7.208 25 F -0.207 7.207 26 C -0.090 4.090 27 H 0.264 0.736 28 H -0.006 1.006 29 H -0.006 1.006 30 H 0.114 0.886 31 H 0.114 0.886 32 H 0.126 0.874 33 H 0.126 0.874 34 H 0.162 0.838 35 H 0.170 0.830 36 H 0.148 0.852 37 H 0.235 0.765 38 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.691 -34.357 0.001 34.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.201 4.201 3 Si 0.797 3.203 4 H -0.180 1.180 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.582 4.582 8 H 0.093 0.907 9 C 0.002 3.998 10 C -0.134 4.134 11 C 0.315 3.685 12 O -0.422 6.422 13 O -0.268 6.268 14 C -0.065 4.065 15 C 0.286 3.714 16 O -0.335 6.335 17 C -0.141 4.141 18 C -0.109 4.109 19 C -0.104 4.104 20 C -0.179 4.179 21 C 0.042 3.958 22 O -0.247 6.247 23 C 0.317 3.683 24 F -0.189 7.189 25 F -0.189 7.189 26 C -0.109 4.109 27 H 0.073 0.927 28 H 0.012 0.988 29 H 0.012 0.988 30 H 0.132 0.868 31 H 0.132 0.868 32 H 0.143 0.857 33 H 0.144 0.856 34 H 0.179 0.821 35 H 0.187 0.813 36 H 0.166 0.834 37 H 0.251 0.749 38 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 2.989 -34.224 -0.001 34.354 hybrid contribution -0.449 0.733 0.000 0.859 sum 2.539 -33.491 -0.001 33.588 Atomic orbital electron populations 1.70150 1.08086 1.27865 1.51267 1.26058 0.95753 1.03718 0.94540 0.85280 0.79215 0.78202 0.77597 1.17965 1.20572 1.20561 1.21673 0.94083 0.91416 1.51073 0.90688 1.18807 0.93610 0.91619 0.95785 1.21544 0.99529 0.86118 1.06204 1.24477 0.87233 0.86002 0.70810 1.90628 1.16837 1.88052 1.46666 1.86607 1.41313 1.14520 1.84340 1.23555 0.94528 0.81167 1.07219 1.22339 0.88741 0.89117 0.71156 1.90573 1.18391 1.88512 1.36039 1.19901 0.95074 0.92045 1.07060 1.21810 0.92939 0.99584 0.96597 1.21346 1.01853 0.90578 0.96669 1.22079 0.91591 1.02240 1.02010 1.18753 0.89804 0.86762 1.00517 1.86653 1.35912 1.13612 1.88567 1.24290 0.85948 0.87101 0.70917 1.93087 1.77536 1.95628 1.52685 1.93087 1.77662 1.95635 1.52549 1.20603 1.01190 0.88886 1.00209 0.92720 0.98763 0.98771 0.86794 0.86805 0.85655 0.85648 0.82070 0.81298 0.83415 0.74922 0.84374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.57 13.29 21.45 0.28 -57.28 16 2 C 0.00 -0.16 5.46 84.65 0.46 0.30 16 3 Si 0.97 43.83 29.54 68.60 2.03 45.86 16 4 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 5 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 6 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 7 C -0.54 -30.46 9.11 25.60 0.23 -30.23 16 8 H 0.07 3.88 7.74 -2.91 -0.02 3.85 16 9 C 0.04 2.10 4.26 29.85 0.13 2.22 16 10 C -0.10 -3.93 5.75 29.85 0.17 -3.76 16 11 C 0.47 18.13 7.96 71.24 0.57 18.70 16 12 O -0.53 -23.29 15.73 21.97 0.35 -22.95 16 13 O -0.35 -11.62 9.75 -45.09 -0.44 -12.06 16 14 C 0.01 0.22 4.55 71.24 0.32 0.55 16 15 C 0.41 9.91 7.20 28.03 0.20 10.11 16 16 O -0.46 -14.49 16.49 15.85 0.26 -14.23 16 17 C -0.14 -2.69 5.87 -20.16 -0.12 -2.81 16 18 C -0.09 -1.25 9.47 22.58 0.21 -1.04 16 19 C -0.09 -1.01 10.02 22.21 0.22 -0.79 16 20 C -0.16 -2.26 8.26 22.44 0.19 -2.08 16 21 C 0.08 1.45 6.48 22.46 0.15 1.60 16 22 O -0.33 -4.64 10.43 -92.54 -0.96 -5.61 16 23 C 0.41 2.88 5.98 113.37 0.68 3.56 16 24 F -0.21 -2.17 15.56 44.97 0.70 -1.47 16 25 F -0.21 -2.18 15.59 44.97 0.70 -1.48 16 26 C -0.09 -1.79 9.54 22.68 0.22 -1.58 16 27 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 28 H -0.01 -0.36 8.10 -2.39 -0.02 -0.38 16 29 H -0.01 -0.36 8.10 -2.39 -0.02 -0.38 16 30 H 0.11 4.20 8.14 -2.39 -0.02 4.18 16 31 H 0.11 4.19 8.14 -2.38 -0.02 4.17 16 32 H 0.13 2.57 8.08 -2.39 -0.02 2.55 16 33 H 0.13 2.57 8.08 -2.38 -0.02 2.55 16 34 H 0.16 1.52 7.05 -2.91 -0.02 1.50 16 35 H 0.17 0.95 8.06 -2.91 -0.02 0.92 16 36 H 0.15 1.76 5.07 -2.91 -0.01 1.74 16 37 H 0.24 -0.86 8.14 -2.39 -0.02 -0.88 16 38 H 0.14 2.91 7.65 -2.91 -0.02 2.89 16 Total: -1.00 -78.36 348.25 7.66 -70.70 By element: Atomic # 1 Polarization: 2.64 SS G_CDS: 1.11 Total: 3.75 kcal Atomic # 6 Polarization: -8.87 SS G_CDS: 3.63 Total: -5.24 kcal Atomic # 7 Polarization: -57.57 SS G_CDS: 0.28 Total: -57.28 kcal Atomic # 8 Polarization: -54.05 SS G_CDS: -0.80 Total: -54.84 kcal Atomic # 9 Polarization: -4.35 SS G_CDS: 1.40 Total: -2.95 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Total: -78.36 7.66 -70.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812617215.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -195.641 kcal (2) G-P(sol) polarization free energy of solvation -78.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -273.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -266.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds