Wall clock time and date at job start Tue Mar 31 2020 15:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38278 * 119.96141 * 2 1 4 4 C 1.38251 * 120.11906 * 179.97438 * 3 2 1 5 5 C 1.38252 * 120.04239 * 0.04611 * 4 3 2 6 6 Cl 1.73603 * 120.03781 * 180.25769 * 5 4 3 7 7 C 1.38815 * 119.92459 * 359.97361 * 5 4 3 8 8 O 1.35930 * 120.05985 * 180.02562 * 7 5 4 9 9 C 1.42893 * 116.99957 * 180.02562 * 8 7 5 10 10 C 1.50697 * 109.47463 * 180.02562 * 9 8 7 11 11 O 1.20825 * 119.99640 * 0.02562 * 10 9 8 12 12 O 1.34227 * 120.00681 * 180.02562 * 10 9 8 13 13 C 1.45192 * 117.00505 * 180.02562 * 12 10 9 14 14 C 1.52999 * 109.47404 * 179.97438 * 13 12 10 15 15 O 1.42900 * 109.47163 * 64.99812 * 14 13 12 16 16 C 1.42898 * 114.00076 * 180.02562 * 15 14 13 17 17 C 1.50701 * 109.47145 * 179.97438 * 16 15 14 18 18 H 1.07997 * 120.00271 * 0.02562 * 17 16 15 19 19 C 1.37877 * 119.99823 * 179.97438 * 17 16 15 20 20 N 1.31516 * 120.00087 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 119.99842 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.46924 * 90.00569 * 21 19 17 23 23 H 1.48503 * 109.47557 * 210.00286 * 21 19 17 24 24 H 1.48498 * 109.47453 * 330.00278 * 21 19 17 25 25 C 1.38151 * 119.96265 * 180.02562 * 2 1 3 26 26 H 1.09000 * 109.46711 * 269.97874 * 1 2 3 27 27 H 1.08996 * 109.46942 * 29.98001 * 1 2 3 28 28 H 1.09002 * 109.46795 * 149.97700 * 1 2 3 29 29 H 1.08000 * 119.94149 * 359.97438 * 3 2 1 30 30 H 1.08000 * 119.97834 * 180.02562 * 4 3 2 31 31 H 1.08997 * 109.47232 * 300.00400 * 9 8 7 32 32 H 1.09008 * 109.46822 * 60.00182 * 9 8 7 33 33 H 1.09000 * 109.46745 * 299.99799 * 13 12 10 34 34 H 1.09001 * 109.47613 * 59.99057 * 13 12 10 35 35 H 1.08998 * 109.47264 * 184.99372 * 14 13 12 36 36 H 1.08995 * 109.46880 * 304.99550 * 14 13 12 37 37 H 1.09001 * 109.47124 * 300.00182 * 16 15 14 38 38 H 1.09001 * 109.46882 * 59.99963 * 16 15 14 39 39 H 0.97007 * 119.99634 * 179.97438 * 20 19 17 40 40 H 1.07995 * 120.02562 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1976 1.1980 0.0000 4 6 3.5801 1.2018 0.0005 5 6 4.2755 0.0069 0.0001 6 17 6.0115 0.0118 0.0075 7 6 3.5840 -1.1968 -0.0003 8 8 4.2650 -2.3732 -0.0002 9 6 3.4881 -3.5725 -0.0012 10 6 4.4074 -4.7666 -0.0003 11 8 5.6050 -4.6069 0.0016 12 8 3.8958 -6.0075 -0.0015 13 6 4.8405 -7.1101 0.0000 14 6 4.0770 -8.4360 -0.0010 15 8 3.3478 -8.5647 -1.2232 16 6 2.5953 -9.7751 -1.3263 17 6 1.8697 -9.8046 -2.6468 18 1 1.9732 -8.9816 -3.3384 19 6 1.0746 -10.8829 -2.9725 20 7 0.9489 -11.8854 -2.1306 21 14 0.1758 -10.9198 -4.6096 22 1 1.0381 -11.5630 -5.6333 23 1 -1.0833 -11.6939 -4.4658 24 1 -0.1421 -9.5319 -5.0313 25 6 2.1969 -1.1969 -0.0005 26 1 -0.3633 -0.0004 1.0277 27 1 -0.3633 0.8901 -0.5135 28 1 -0.3633 -0.8898 -0.5142 29 1 1.6560 2.1324 -0.0004 30 1 4.1171 2.1388 0.0010 31 1 2.8586 -3.5983 0.8882 32 1 2.8600 -3.5977 -0.8918 33 1 5.4687 -7.0514 -0.8888 34 1 5.4656 -7.0518 0.8911 35 1 4.7827 -9.2617 0.0896 36 1 3.3837 -8.4566 0.8397 37 1 3.2700 -10.6289 -1.2628 38 1 1.8711 -9.8231 -0.5131 39 1 0.3892 -12.6439 -2.3597 40 1 1.6568 -2.1320 -0.0014 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815168833.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:20:15 Heat of formation + Delta-G solvation = -154.523293 kcal Electronic energy + Delta-G solvation = -24181.669900 eV Core-core repulsion = 20181.150279 eV Total energy + Delta-G solvation = -4000.519621 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.096 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.94937 -40.16186 -38.15674 -37.04708 -36.67786 -36.06553 -32.90981 -32.81106 -31.00456 -30.35173 -28.93617 -27.15917 -26.86427 -23.49309 -22.51522 -22.17712 -22.03633 -20.99804 -18.56950 -17.60000 -17.14142 -17.13876 -16.57318 -16.44378 -16.08536 -15.83568 -15.25707 -14.72811 -14.65574 -14.39889 -14.13187 -14.07164 -13.83192 -13.32019 -13.30998 -12.84865 -12.80036 -12.55288 -12.04885 -12.00211 -11.74873 -11.63197 -11.49223 -11.24816 -11.04613 -10.99173 -10.88484 -10.81192 -10.49256 -10.43148 -10.08969 -9.20880 -9.17326 -8.92450 -8.54348 -8.25990 -6.15643 -4.17529 0.70482 0.89111 1.84218 1.99525 2.08828 3.15768 3.23809 3.27596 3.32740 3.37848 4.22286 4.28534 4.30474 4.48318 4.57727 4.65989 4.69628 4.73758 4.76991 5.01006 5.09906 5.14608 5.19833 5.21036 5.26808 5.39349 5.55680 5.65741 5.73554 5.79446 5.85964 5.99947 6.06349 6.20835 6.43592 6.76933 7.00640 7.35196 7.68645 7.74238 8.08173 8.47244 8.94830 9.47395 10.95844 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.013863 B = 0.002230 C = 0.002009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.252581 B =12550.874455 C =13931.255498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.039 4.039 3 C -0.147 4.147 4 C -0.069 4.069 5 C -0.073 4.073 6 Cl -0.053 7.053 7 C 0.146 3.854 8 O -0.282 6.282 9 C 0.066 3.934 10 C 0.464 3.536 11 O -0.489 6.489 12 O -0.337 6.337 13 C 0.077 3.923 14 C 0.061 3.939 15 O -0.391 6.391 16 C 0.194 3.806 17 C -0.516 4.516 18 H 0.067 0.933 19 C 0.056 3.944 20 N -0.898 5.898 21 Si 0.909 3.091 22 H -0.278 1.278 23 H -0.285 1.285 24 H -0.271 1.271 25 C -0.201 4.201 26 H 0.077 0.923 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.133 0.867 30 H 0.140 0.860 31 H 0.109 0.891 32 H 0.112 0.888 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.065 0.935 36 H 0.051 0.949 37 H 0.007 0.993 38 H 0.008 0.992 39 H 0.264 0.736 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.046 26.150 8.055 27.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.040 4.040 3 C -0.166 4.166 4 C -0.087 4.087 5 C -0.100 4.100 6 Cl -0.025 7.025 7 C 0.099 3.901 8 O -0.195 6.195 9 C -0.010 4.010 10 C 0.304 3.696 11 O -0.376 6.376 12 O -0.253 6.253 13 C 0.003 3.997 14 C -0.016 4.016 15 O -0.311 6.311 16 C 0.120 3.880 17 C -0.554 4.554 18 H 0.085 0.915 19 C -0.145 4.145 20 N -0.538 5.538 21 Si 0.736 3.264 22 H -0.204 1.204 23 H -0.210 1.210 24 H -0.196 1.196 25 C -0.219 4.219 26 H 0.095 0.905 27 H 0.090 0.910 28 H 0.091 0.909 29 H 0.151 0.849 30 H 0.158 0.842 31 H 0.127 0.873 32 H 0.130 0.870 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.083 0.917 36 H 0.069 0.931 37 H 0.024 0.976 38 H 0.025 0.975 39 H 0.074 0.926 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 2.698 26.057 7.928 27.370 hybrid contribution -0.370 -0.573 -0.564 0.884 sum 2.328 25.484 7.364 26.629 Atomic orbital electron populations 1.20874 0.90261 1.03517 1.02949 1.19834 0.96595 0.92213 0.95317 1.20937 0.93176 0.98083 1.04387 1.20911 0.94164 0.96068 0.97598 1.20185 0.85792 0.92134 1.11931 1.98388 1.08186 1.98851 1.97030 1.18629 0.90304 0.84750 0.96394 1.86165 1.33953 1.11121 1.88263 1.21963 0.92279 0.80924 1.05867 1.22691 0.88154 0.84819 0.73891 1.90713 1.16431 1.86569 1.43899 1.86534 1.41474 1.14037 1.83248 1.23306 0.90648 0.82794 1.02905 1.22334 0.95761 0.92976 0.90558 1.87916 1.64196 1.44298 1.34714 1.20246 0.89615 0.80547 0.97574 1.21040 1.27482 1.04914 1.01947 0.91508 1.24953 0.96580 0.95101 0.97876 1.69961 1.39546 1.08323 1.35920 0.86322 0.78886 0.78274 0.82929 1.20438 1.21046 1.19596 1.21192 0.91776 0.99918 1.09061 0.90477 0.90980 0.90872 0.84882 0.84201 0.87341 0.87040 0.90182 0.90123 0.91679 0.93072 0.97565 0.97456 0.92598 0.84100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.61 10.01 36.00 0.36 -0.24 16 2 C -0.04 -0.29 5.88 -104.64 -0.62 -0.90 16 3 C -0.15 -1.02 9.70 -39.56 -0.38 -1.40 16 4 C -0.07 -0.55 9.83 -39.57 -0.39 -0.94 16 5 C -0.07 -0.77 6.33 -39.36 -0.25 -1.02 16 6 Cl -0.05 -0.61 28.50 -51.86 -1.48 -2.09 16 7 C 0.15 1.58 6.68 -39.19 -0.26 1.32 16 8 O -0.28 -3.56 9.13 -39.47 -0.36 -3.92 16 9 C 0.07 0.70 5.33 36.00 0.19 0.89 16 10 C 0.46 6.72 8.03 36.00 0.29 7.01 16 11 O -0.49 -8.48 16.25 -25.48 -0.41 -8.89 16 12 O -0.34 -5.30 10.19 -42.02 -0.43 -5.73 16 13 C 0.08 1.18 5.84 37.16 0.22 1.39 16 14 C 0.06 1.08 6.33 37.16 0.24 1.32 16 15 O -0.39 -9.25 10.30 -38.80 -0.40 -9.65 16 16 C 0.19 5.22 5.69 36.01 0.20 5.42 16 17 C -0.52 -14.99 9.43 -34.44 -0.32 -15.32 16 18 H 0.07 1.93 7.81 -52.49 -0.41 1.52 16 19 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 20 N -0.90 -26.49 13.29 55.43 0.74 -25.76 16 21 Si 0.91 21.56 29.54 -169.99 -5.02 16.54 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 25 C -0.20 -1.72 8.69 -39.44 -0.34 -2.07 16 26 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.07 0.29 8.08 -51.93 -0.42 -0.13 16 28 H 0.07 0.36 8.08 -51.93 -0.42 -0.06 16 29 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 30 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 31 H 0.11 0.84 7.66 -51.93 -0.40 0.45 16 32 H 0.11 0.99 7.66 -51.92 -0.40 0.59 16 33 H 0.08 1.26 8.13 -51.93 -0.42 0.84 16 34 H 0.08 1.03 8.13 -51.93 -0.42 0.60 16 35 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 36 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 38 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 39 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 40 H 0.14 0.96 6.30 -52.49 -0.33 0.63 16 LS Contribution 368.76 15.07 5.56 5.56 Total: -1.00 -34.44 368.76 -8.29 -42.72 By element: Atomic # 1 Polarization: -0.43 SS G_CDS: -5.32 Total: -5.74 kcal Atomic # 6 Polarization: -1.87 SS G_CDS: -1.16 Total: -3.04 kcal Atomic # 7 Polarization: -26.49 SS G_CDS: 0.74 Total: -25.76 kcal Atomic # 8 Polarization: -26.59 SS G_CDS: -1.60 Total: -28.19 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 17 Polarization: -0.61 SS G_CDS: -1.48 Total: -2.09 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.44 -8.29 -42.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815168833.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.799 kcal (2) G-P(sol) polarization free energy of solvation -34.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds