Wall clock time and date at job start Tue Mar 31 2020 15:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38278 * 119.96141 * 2 1 4 4 C 1.38251 * 120.11906 * 179.97438 * 3 2 1 5 5 C 1.38252 * 120.04239 * 0.04611 * 4 3 2 6 6 Cl 1.73603 * 120.03781 * 180.25769 * 5 4 3 7 7 C 1.38815 * 119.92459 * 359.97361 * 5 4 3 8 8 O 1.35930 * 120.05985 * 180.02562 * 7 5 4 9 9 C 1.42893 * 116.99957 * 180.02562 * 8 7 5 10 10 C 1.50697 * 109.47463 * 180.02562 * 9 8 7 11 11 O 1.20825 * 119.99640 * 0.02562 * 10 9 8 12 12 O 1.34227 * 120.00681 * 180.02562 * 10 9 8 13 13 C 1.45192 * 117.00505 * 180.02562 * 12 10 9 14 14 C 1.52999 * 109.47404 * 179.97438 * 13 12 10 15 15 O 1.42900 * 109.47163 * 64.99812 * 14 13 12 16 16 C 1.42898 * 114.00076 * 180.02562 * 15 14 13 17 17 C 1.50701 * 109.47145 * 179.97438 * 16 15 14 18 18 H 1.07997 * 120.00271 * 0.02562 * 17 16 15 19 19 C 1.37877 * 119.99823 * 179.97438 * 17 16 15 20 20 N 1.31516 * 120.00087 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 119.99842 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.46924 * 90.00569 * 21 19 17 23 23 H 1.48503 * 109.47557 * 210.00286 * 21 19 17 24 24 H 1.48498 * 109.47453 * 330.00278 * 21 19 17 25 25 C 1.38151 * 119.96265 * 180.02562 * 2 1 3 26 26 H 1.09000 * 109.46711 * 269.97874 * 1 2 3 27 27 H 1.08996 * 109.46942 * 29.98001 * 1 2 3 28 28 H 1.09002 * 109.46795 * 149.97700 * 1 2 3 29 29 H 1.08000 * 119.94149 * 359.97438 * 3 2 1 30 30 H 1.08000 * 119.97834 * 180.02562 * 4 3 2 31 31 H 1.08997 * 109.47232 * 300.00400 * 9 8 7 32 32 H 1.09008 * 109.46822 * 60.00182 * 9 8 7 33 33 H 1.09000 * 109.46745 * 299.99799 * 13 12 10 34 34 H 1.09001 * 109.47613 * 59.99057 * 13 12 10 35 35 H 1.08998 * 109.47264 * 184.99372 * 14 13 12 36 36 H 1.08995 * 109.46880 * 304.99550 * 14 13 12 37 37 H 1.09001 * 109.47124 * 300.00182 * 16 15 14 38 38 H 1.09001 * 109.46882 * 59.99963 * 16 15 14 39 39 H 0.97007 * 119.99634 * 179.97438 * 20 19 17 40 40 H 1.07995 * 120.02562 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1976 1.1980 0.0000 4 6 3.5801 1.2018 0.0005 5 6 4.2755 0.0069 0.0001 6 17 6.0115 0.0118 0.0075 7 6 3.5840 -1.1968 -0.0003 8 8 4.2650 -2.3732 -0.0002 9 6 3.4881 -3.5725 -0.0012 10 6 4.4074 -4.7666 -0.0003 11 8 5.6050 -4.6069 0.0016 12 8 3.8958 -6.0075 -0.0015 13 6 4.8405 -7.1101 0.0000 14 6 4.0770 -8.4360 -0.0010 15 8 3.3478 -8.5647 -1.2232 16 6 2.5953 -9.7751 -1.3263 17 6 1.8697 -9.8046 -2.6468 18 1 1.9732 -8.9816 -3.3384 19 6 1.0746 -10.8829 -2.9725 20 7 0.9489 -11.8854 -2.1306 21 14 0.1758 -10.9198 -4.6096 22 1 1.0381 -11.5630 -5.6333 23 1 -1.0833 -11.6939 -4.4658 24 1 -0.1421 -9.5319 -5.0313 25 6 2.1969 -1.1969 -0.0005 26 1 -0.3633 -0.0004 1.0277 27 1 -0.3633 0.8901 -0.5135 28 1 -0.3633 -0.8898 -0.5142 29 1 1.6560 2.1324 -0.0004 30 1 4.1171 2.1388 0.0010 31 1 2.8586 -3.5983 0.8882 32 1 2.8600 -3.5977 -0.8918 33 1 5.4687 -7.0514 -0.8888 34 1 5.4656 -7.0518 0.8911 35 1 4.7827 -9.2617 0.0896 36 1 3.3837 -8.4566 0.8397 37 1 3.2700 -10.6289 -1.2628 38 1 1.8711 -9.8231 -0.5131 39 1 0.3892 -12.6439 -2.3597 40 1 1.6568 -2.1320 -0.0014 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815168833.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:20:14 Heat of formation + Delta-G solvation = -174.327072 kcal Electronic energy + Delta-G solvation = -24182.528657 eV Core-core repulsion = 20181.150279 eV Total energy + Delta-G solvation = -4001.378377 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.096 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.89966 -41.10185 -39.01882 -38.58736 -37.44601 -37.44189 -34.95018 -33.47822 -32.09642 -31.33951 -29.94770 -28.91793 -27.62472 -24.65574 -24.31064 -23.39133 -22.66722 -22.08407 -19.41643 -18.72024 -18.56127 -18.24721 -18.02889 -17.46074 -17.23556 -16.79310 -16.72625 -16.29790 -16.15375 -15.30625 -15.20883 -14.80705 -14.71396 -14.50164 -14.23863 -13.95645 -13.75352 -13.64238 -13.27785 -13.22175 -12.93070 -12.71080 -12.55529 -12.55084 -12.47276 -12.26277 -12.01568 -11.88261 -11.81934 -11.80814 -11.60281 -11.28479 -10.89891 -10.27642 -9.82965 -9.22905 -8.32400 -6.44436 0.07933 0.25971 0.90861 0.97123 1.22007 1.41128 1.43362 1.55472 2.34499 2.35302 2.54855 3.01759 3.04022 3.36609 3.70582 3.75736 3.87848 3.91970 3.93568 4.08234 4.09902 4.24442 4.37388 4.39469 4.49589 4.63555 4.64978 4.75197 4.85601 4.87925 5.02429 5.16139 5.17359 5.25413 5.25886 5.51052 5.54314 5.65151 5.94990 6.06126 6.48431 6.55199 6.79200 7.27167 8.79672 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.013863 B = 0.002230 C = 0.002009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.252581 B =12550.874455 C =13931.255498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.041 4.041 3 C -0.142 4.142 4 C -0.070 4.070 5 C -0.096 4.096 6 Cl -0.074 7.074 7 C 0.123 3.877 8 O -0.309 6.309 9 C 0.069 3.931 10 C 0.464 3.536 11 O -0.524 6.524 12 O -0.348 6.348 13 C 0.079 3.921 14 C 0.054 3.946 15 O -0.409 6.409 16 C 0.208 3.792 17 C -0.550 4.550 18 H 0.060 0.940 19 C 0.007 3.993 20 N -0.929 5.929 21 Si 0.982 3.018 22 H -0.270 1.270 23 H -0.274 1.274 24 H -0.264 1.264 25 C -0.205 4.205 26 H 0.087 0.913 27 H 0.085 0.915 28 H 0.074 0.926 29 H 0.163 0.837 30 H 0.158 0.842 31 H 0.141 0.859 32 H 0.131 0.869 33 H 0.072 0.928 34 H 0.111 0.889 35 H 0.083 0.917 36 H 0.061 0.939 37 H -0.008 1.008 38 H -0.008 1.008 39 H 0.271 0.729 40 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.163 27.522 7.672 28.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.041 4.041 3 C -0.160 4.160 4 C -0.088 4.088 5 C -0.123 4.123 6 Cl -0.046 7.046 7 C 0.077 3.923 8 O -0.223 6.223 9 C -0.006 4.006 10 C 0.307 3.693 11 O -0.413 6.413 12 O -0.264 6.264 13 C 0.006 3.994 14 C -0.023 4.023 15 O -0.329 6.329 16 C 0.133 3.867 17 C -0.587 4.587 18 H 0.079 0.921 19 C -0.191 4.191 20 N -0.568 5.568 21 Si 0.805 3.195 22 H -0.195 1.195 23 H -0.198 1.198 24 H -0.188 1.188 25 C -0.223 4.223 26 H 0.105 0.895 27 H 0.104 0.896 28 H 0.093 0.907 29 H 0.180 0.820 30 H 0.175 0.825 31 H 0.158 0.842 32 H 0.149 0.851 33 H 0.090 0.910 34 H 0.129 0.871 35 H 0.101 0.899 36 H 0.079 0.921 37 H 0.009 0.991 38 H 0.010 0.990 39 H 0.080 0.920 40 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 0.816 27.445 7.561 28.479 hybrid contribution 0.208 -0.925 -0.363 1.016 sum 1.024 26.520 7.198 27.498 Atomic orbital electron populations 1.20937 0.88399 1.04352 1.03809 1.20206 0.97959 0.91902 0.94068 1.21323 0.92740 0.99256 1.02711 1.21195 0.94861 0.95903 0.96877 1.20494 0.84931 0.93170 1.13723 1.98371 1.10042 1.98910 1.97240 1.18865 0.91267 0.84110 0.98028 1.86107 1.35284 1.11973 1.88963 1.22132 0.91261 0.79026 1.08221 1.23421 0.88318 0.85089 0.72423 1.90693 1.18074 1.86842 1.45641 1.86526 1.41814 1.14715 1.83383 1.23270 0.90276 0.81824 1.04017 1.22652 0.96014 0.95088 0.88533 1.87859 1.64513 1.42687 1.37863 1.19878 0.89129 0.81328 0.96382 1.21381 1.28911 1.05440 1.02986 0.92138 1.25933 0.96988 0.94304 1.01911 1.70059 1.39975 1.08880 1.37906 0.85203 0.77769 0.78722 0.77851 1.19483 1.19846 1.18825 1.21429 0.90897 1.01291 1.08731 0.89468 0.89575 0.90689 0.81983 0.82450 0.84208 0.85112 0.90961 0.87137 0.89896 0.92107 0.99073 0.99036 0.92003 0.82577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.83 10.01 71.24 0.71 -0.12 16 2 C -0.04 -0.50 5.88 -19.88 -0.12 -0.62 16 3 C -0.14 -1.58 9.70 22.28 0.22 -1.37 16 4 C -0.07 -1.01 9.83 22.28 0.22 -0.80 16 5 C -0.10 -1.99 6.33 22.41 0.14 -1.85 16 6 Cl -0.07 -1.75 28.50 -2.72 -0.08 -1.82 16 7 C 0.12 2.60 6.68 22.52 0.15 2.75 16 8 O -0.31 -7.80 9.13 -73.68 -0.67 -8.47 16 9 C 0.07 1.41 5.33 71.23 0.38 1.79 16 10 C 0.46 13.35 8.03 71.23 0.57 13.92 16 11 O -0.52 -18.39 16.25 28.40 0.46 -17.92 16 12 O -0.35 -10.79 10.19 -48.74 -0.50 -11.29 16 13 C 0.08 2.39 5.84 71.98 0.42 2.81 16 14 C 0.05 1.88 6.33 71.98 0.46 2.34 16 15 O -0.41 -19.57 10.30 -145.57 -1.50 -21.06 16 16 C 0.21 11.39 5.69 71.24 0.41 11.80 16 17 C -0.55 -32.32 9.43 25.60 0.24 -32.08 16 18 H 0.06 3.54 7.81 -2.91 -0.02 3.51 16 19 C 0.01 0.42 5.46 84.65 0.46 0.88 16 20 N -0.93 -54.86 13.29 21.45 0.28 -54.58 16 21 Si 0.98 43.67 29.54 68.60 2.03 45.70 16 22 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 23 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 24 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 25 C -0.20 -3.17 8.69 22.36 0.19 -2.98 16 26 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 27 H 0.09 0.38 8.08 -2.39 -0.02 0.36 16 28 H 0.07 0.52 8.08 -2.39 -0.02 0.50 16 29 H 0.16 0.82 8.06 -2.91 -0.02 0.80 16 30 H 0.16 1.60 8.06 -2.91 -0.02 1.57 16 31 H 0.14 1.92 7.66 -2.39 -0.02 1.90 16 32 H 0.13 2.13 7.66 -2.38 -0.02 2.12 16 33 H 0.07 2.29 8.13 -2.39 -0.02 2.27 16 34 H 0.11 2.68 8.13 -2.39 -0.02 2.66 16 35 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 36 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 37 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 38 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 39 H 0.27 14.82 8.31 -92.70 -0.77 14.05 16 40 H 0.16 1.78 6.30 -2.91 -0.02 1.76 16 Total: -1.00 -75.33 368.76 5.53 -69.79 By element: Atomic # 1 Polarization: 2.13 SS G_CDS: 1.05 Total: 3.18 kcal Atomic # 6 Polarization: -7.98 SS G_CDS: 4.46 Total: -3.52 kcal Atomic # 7 Polarization: -54.86 SS G_CDS: 0.28 Total: -54.58 kcal Atomic # 8 Polarization: -56.54 SS G_CDS: -2.21 Total: -58.75 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Atomic # 17 Polarization: -1.75 SS G_CDS: -0.08 Total: -1.82 kcal Total: -75.33 5.53 -69.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815168833.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.533 kcal (2) G-P(sol) polarization free energy of solvation -75.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds