Wall clock time and date at job start Tue Mar 31 2020 14:52:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86792 * 120.00355 * 2 1 4 4 H 1.48497 * 109.47307 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47230 * 300.00229 * 3 2 1 6 6 H 1.48502 * 109.46985 * 59.99998 * 3 2 1 7 7 C 1.37877 * 119.99471 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99794 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00316 * 359.97438 * 7 2 1 10 10 O 1.42902 * 109.47118 * 180.02562 * 9 7 2 11 11 C 1.42906 * 113.99808 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.46884 * 180.02562 * 11 10 9 13 13 O 1.45204 * 109.47082 * 65.00090 * 12 11 10 14 14 C 1.34230 * 116.99810 * 180.02562 * 13 12 11 15 15 O 1.20828 * 119.99945 * 359.97438 * 14 13 12 16 16 C 1.50698 * 120.00119 * 179.97438 * 14 13 12 17 17 S 1.81394 * 109.47410 * 179.97438 * 16 14 13 18 18 C 1.81398 * 103.00193 * 179.97438 * 17 16 14 19 19 C 1.50706 * 109.47148 * 179.97438 * 18 17 16 20 20 C 1.38244 * 119.97491 * 269.72674 * 19 18 17 21 21 C 1.38201 * 120.02142 * 179.72306 * 20 19 18 22 22 C 1.38459 * 119.97601 * 0.57371 * 21 20 19 23 23 F 1.35094 * 120.02797 * 179.67746 * 22 21 20 24 24 C 1.38461 * 119.94519 * 359.70287 * 22 21 20 25 25 C 1.38193 * 119.98059 * 359.97438 * 24 22 21 26 26 H 0.97006 * 119.99695 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.46935 * 60.00491 * 9 7 2 28 28 H 1.09005 * 109.47199 * 300.00524 * 9 7 2 29 29 H 1.08997 * 109.47053 * 59.99946 * 11 10 9 30 30 H 1.09003 * 109.46948 * 299.99564 * 11 10 9 31 31 H 1.08993 * 109.47474 * 304.99816 * 12 11 10 32 32 H 1.09003 * 109.46753 * 184.99645 * 12 11 10 33 33 H 1.08998 * 109.47180 * 59.99674 * 16 14 13 34 34 H 1.09001 * 109.47086 * 299.99751 * 16 14 13 35 35 H 1.09000 * 109.46753 * 60.00559 * 18 17 16 36 36 H 1.09000 * 109.47055 * 299.99894 * 18 17 16 37 37 H 1.08000 * 119.98716 * 359.97438 * 20 19 18 38 38 H 1.07996 * 120.01399 * 180.25476 * 21 20 19 39 39 H 1.08009 * 120.01051 * 179.97438 * 24 22 21 40 40 H 1.07999 * 119.99486 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 8 2.1795 -3.5854 -0.0005 11 6 1.5648 -4.8755 -0.0011 12 6 2.6477 -5.9563 -0.0004 13 8 3.3981 -5.8888 1.2409 14 6 4.3927 -6.7759 1.4007 15 8 4.6282 -7.5824 0.5323 16 6 5.2156 -6.7661 2.6631 17 16 6.4694 -8.0742 2.5779 18 6 7.3437 -7.9050 4.1583 19 6 8.4352 -8.9408 4.2419 20 6 8.1699 -10.1810 4.7919 21 6 9.1686 -11.1335 4.8639 22 6 10.4384 -10.8412 4.3957 23 9 11.4171 -11.7693 4.4715 24 6 10.7044 -9.5967 3.8502 25 6 9.7025 -8.6480 3.7732 26 1 -0.4850 0.8401 0.0004 27 1 0.6240 -2.5567 -0.8903 28 1 0.6245 -2.5571 0.8897 29 1 0.9450 -4.9822 -0.8913 30 1 0.9444 -4.9828 0.8887 31 1 3.3219 -5.7957 -0.8417 32 1 2.1817 -6.9375 -0.0904 33 1 4.5666 -6.9407 3.5212 34 1 5.7062 -5.7985 2.7695 35 1 6.6416 -8.0506 4.9792 36 1 7.7814 -6.9091 4.2265 37 1 7.1807 -10.4070 5.1618 38 1 8.9601 -12.1038 5.2898 39 1 11.6947 -9.3674 3.4850 40 1 9.9098 -7.6771 3.3481 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815170213.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:21 Heat of formation + Delta-G solvation = -157.198943 kcal Electronic energy + Delta-G solvation = -23136.964411 eV Core-core repulsion = 19150.745261 eV Total energy + Delta-G solvation = -3986.219150 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.098 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.31301 -40.38282 -39.58403 -37.15553 -36.10369 -33.01951 -32.81735 -31.63012 -31.17885 -29.62291 -27.24571 -26.92173 -23.55531 -22.84307 -22.34963 -22.05761 -21.11133 -18.15434 -17.84457 -17.13370 -16.91746 -16.75930 -16.49046 -16.06222 -15.89666 -15.81989 -15.55443 -14.81465 -14.61199 -14.45628 -14.31024 -14.11920 -13.99624 -13.77016 -13.58160 -12.98475 -12.70780 -12.51232 -12.48499 -12.17461 -11.96623 -11.48790 -11.48407 -10.98441 -10.91617 -10.79769 -10.55428 -10.46090 -10.42256 -10.08829 -9.59428 -9.15666 -8.99309 -8.92611 -8.25883 -8.01173 -6.15791 -4.17532 0.32885 0.75794 1.22605 2.09983 2.11707 2.72643 3.17945 3.26065 3.32701 3.39057 3.79568 4.08573 4.16250 4.28683 4.42633 4.54261 4.56900 4.65754 4.70830 4.75914 4.95311 5.00490 5.02062 5.16155 5.20965 5.40409 5.41808 5.48611 5.64414 5.72587 5.80528 5.87051 5.96206 6.01593 6.38180 6.46739 7.00944 7.35388 7.68161 7.74503 8.08273 8.47550 8.95186 9.47414 10.95752 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.021555 B = 0.001681 C = 0.001596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.684346 B =16648.774896 C =17543.963276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.908 3.092 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.515 4.515 8 H 0.067 0.933 9 C 0.194 3.806 10 O -0.391 6.391 11 C 0.061 3.939 12 C 0.076 3.924 13 O -0.336 6.336 14 C 0.478 3.522 15 O -0.496 6.496 16 C -0.108 4.108 17 S -0.170 6.170 18 C -0.067 4.067 19 C -0.082 4.082 20 C -0.071 4.071 21 C -0.154 4.154 22 C 0.102 3.898 23 F -0.140 7.140 24 C -0.153 4.153 25 C -0.070 4.070 26 H 0.264 0.736 27 H 0.007 0.993 28 H 0.007 0.993 29 H 0.065 0.935 30 H 0.050 0.950 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.123 0.877 34 H 0.126 0.874 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.137 0.863 38 H 0.138 0.862 39 H 0.138 0.862 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.396 -21.179 11.614 29.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.736 3.264 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.553 4.553 8 H 0.085 0.915 9 C 0.120 3.880 10 O -0.311 6.311 11 C -0.016 4.016 12 C 0.002 3.998 13 O -0.252 6.252 14 C 0.319 3.681 15 O -0.384 6.384 16 C -0.256 4.256 17 S 0.059 5.941 18 C -0.214 4.214 19 C -0.084 4.084 20 C -0.091 4.091 21 C -0.173 4.173 22 C 0.082 3.918 23 F -0.118 7.118 24 C -0.172 4.172 25 C -0.090 4.090 26 H 0.073 0.927 27 H 0.025 0.975 28 H 0.025 0.975 29 H 0.082 0.918 30 H 0.069 0.931 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.141 0.859 34 H 0.144 0.856 35 H 0.114 0.886 36 H 0.115 0.885 37 H 0.154 0.846 38 H 0.155 0.845 39 H 0.156 0.844 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 16.638 -21.958 10.489 29.478 hybrid contribution -0.142 1.568 0.867 1.797 sum 16.496 -20.390 11.356 28.580 Atomic orbital electron populations 1.69973 1.06101 1.27118 1.50532 1.24955 0.94998 0.99479 0.95094 0.86271 0.80016 0.82501 0.77652 1.19469 1.20809 1.20812 1.21084 0.94133 0.89274 1.50838 0.91457 1.20253 0.88750 0.83485 0.95552 1.87918 1.35347 1.12611 1.95239 1.22332 0.93187 0.85440 1.00683 1.23285 0.93651 0.98983 0.83873 1.86574 1.43093 1.53627 1.41921 1.22411 0.79433 0.78631 0.87639 1.90702 1.67246 1.37628 1.42776 1.23119 0.99712 1.04152 0.98663 1.87782 1.38450 1.44087 1.23824 1.22436 0.98803 1.01248 0.98937 1.19218 0.93763 0.94803 1.00613 1.20941 0.99182 0.91753 0.97196 1.21147 0.91785 1.01300 1.03031 1.17790 0.85895 0.87199 1.00935 1.91510 1.61307 1.64753 1.94247 1.21161 1.01226 0.92475 1.02343 1.20966 0.91541 0.99585 0.96903 0.92664 0.97546 0.97471 0.91751 0.93139 0.90262 0.90211 0.85864 0.85574 0.88565 0.88461 0.84555 0.84451 0.84409 0.84468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.51 13.29 55.43 0.74 -25.77 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.91 21.58 29.54 -169.99 -5.02 16.56 16 4 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.52 -15.02 9.43 -34.44 -0.32 -15.35 16 8 H 0.07 1.96 7.81 -52.48 -0.41 1.55 16 9 C 0.19 5.22 5.69 36.00 0.20 5.43 16 10 O -0.39 -9.31 10.30 -38.80 -0.40 -9.71 16 11 C 0.06 1.09 6.33 37.16 0.24 1.32 16 12 C 0.08 1.17 5.84 37.16 0.22 1.38 16 13 O -0.34 -5.35 10.19 -42.02 -0.43 -5.77 16 14 C 0.48 6.75 7.98 36.00 0.29 7.04 16 15 O -0.50 -8.19 15.61 -18.75 -0.29 -8.48 16 16 C -0.11 -1.06 6.53 36.00 0.24 -0.83 16 17 S -0.17 -1.72 20.86 -107.50 -2.24 -3.96 16 18 C -0.07 -0.42 6.07 36.01 0.22 -0.20 16 19 C -0.08 -0.57 5.14 -104.61 -0.54 -1.11 16 20 C -0.07 -0.46 9.70 -39.59 -0.38 -0.84 16 21 C -0.15 -1.05 10.03 -39.51 -0.40 -1.45 16 22 C 0.10 0.81 7.30 -39.42 -0.29 0.52 16 23 F -0.14 -1.24 17.27 2.25 0.04 -1.20 16 24 C -0.15 -1.08 10.03 -39.52 -0.40 -1.47 16 25 C -0.07 -0.47 9.70 -39.59 -0.38 -0.86 16 26 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 27 H 0.01 0.19 8.14 -51.93 -0.42 -0.24 16 28 H 0.01 0.21 8.14 -51.93 -0.42 -0.22 16 29 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.08 1.25 8.13 -51.93 -0.42 0.83 16 32 H 0.08 1.02 8.13 -51.93 -0.42 0.60 16 33 H 0.12 0.91 8.14 -51.92 -0.42 0.49 16 34 H 0.13 1.07 8.14 -51.92 -0.42 0.64 16 35 H 0.10 0.46 8.08 -51.92 -0.42 0.04 16 36 H 0.10 0.50 8.09 -51.92 -0.42 0.08 16 37 H 0.14 0.65 8.06 -52.49 -0.42 0.22 16 38 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 39 H 0.14 0.74 8.06 -52.48 -0.42 0.32 16 40 H 0.14 0.72 8.06 -52.49 -0.42 0.30 16 LS Contribution 373.24 15.07 5.62 5.62 Total: -1.00 -34.16 373.24 -8.85 -43.01 By element: Atomic # 1 Polarization: 0.08 SS G_CDS: -5.46 Total: -5.38 kcal Atomic # 6 Polarization: -3.51 SS G_CDS: -1.41 Total: -4.92 kcal Atomic # 7 Polarization: -26.51 SS G_CDS: 0.74 Total: -25.77 kcal Atomic # 8 Polarization: -22.84 SS G_CDS: -1.12 Total: -23.96 kcal Atomic # 9 Polarization: -1.24 SS G_CDS: 0.04 Total: -1.20 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: -1.72 SS G_CDS: -2.24 Total: -3.96 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.16 -8.85 -43.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815170213.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.192 kcal (2) G-P(sol) polarization free energy of solvation -34.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds