Wall clock time and date at job start Tue Mar 31 2020 14:52:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86792 * 120.00355 * 2 1 4 4 H 1.48497 * 109.47307 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47230 * 300.00229 * 3 2 1 6 6 H 1.48502 * 109.46985 * 59.99998 * 3 2 1 7 7 C 1.37877 * 119.99471 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99794 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00316 * 359.97438 * 7 2 1 10 10 O 1.42902 * 109.47118 * 180.02562 * 9 7 2 11 11 C 1.42906 * 113.99808 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.46884 * 180.02562 * 11 10 9 13 13 O 1.45204 * 109.47082 * 65.00090 * 12 11 10 14 14 C 1.34230 * 116.99810 * 180.02562 * 13 12 11 15 15 O 1.20828 * 119.99945 * 359.97438 * 14 13 12 16 16 C 1.50698 * 120.00119 * 179.97438 * 14 13 12 17 17 S 1.81394 * 109.47410 * 179.97438 * 16 14 13 18 18 C 1.81398 * 103.00193 * 179.97438 * 17 16 14 19 19 C 1.50706 * 109.47148 * 179.97438 * 18 17 16 20 20 C 1.38244 * 119.97491 * 269.72674 * 19 18 17 21 21 C 1.38201 * 120.02142 * 179.72306 * 20 19 18 22 22 C 1.38459 * 119.97601 * 0.57371 * 21 20 19 23 23 F 1.35094 * 120.02797 * 179.67746 * 22 21 20 24 24 C 1.38461 * 119.94519 * 359.70287 * 22 21 20 25 25 C 1.38193 * 119.98059 * 359.97438 * 24 22 21 26 26 H 0.97006 * 119.99695 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.46935 * 60.00491 * 9 7 2 28 28 H 1.09005 * 109.47199 * 300.00524 * 9 7 2 29 29 H 1.08997 * 109.47053 * 59.99946 * 11 10 9 30 30 H 1.09003 * 109.46948 * 299.99564 * 11 10 9 31 31 H 1.08993 * 109.47474 * 304.99816 * 12 11 10 32 32 H 1.09003 * 109.46753 * 184.99645 * 12 11 10 33 33 H 1.08998 * 109.47180 * 59.99674 * 16 14 13 34 34 H 1.09001 * 109.47086 * 299.99751 * 16 14 13 35 35 H 1.09000 * 109.46753 * 60.00559 * 18 17 16 36 36 H 1.09000 * 109.47055 * 299.99894 * 18 17 16 37 37 H 1.08000 * 119.98716 * 359.97438 * 20 19 18 38 38 H 1.07996 * 120.01399 * 180.25476 * 21 20 19 39 39 H 1.08009 * 120.01051 * 179.97438 * 24 22 21 40 40 H 1.07999 * 119.99486 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 8 2.1795 -3.5854 -0.0005 11 6 1.5648 -4.8755 -0.0011 12 6 2.6477 -5.9563 -0.0004 13 8 3.3981 -5.8888 1.2409 14 6 4.3927 -6.7759 1.4007 15 8 4.6282 -7.5824 0.5323 16 6 5.2156 -6.7661 2.6631 17 16 6.4694 -8.0742 2.5779 18 6 7.3437 -7.9050 4.1583 19 6 8.4352 -8.9408 4.2419 20 6 8.1699 -10.1810 4.7919 21 6 9.1686 -11.1335 4.8639 22 6 10.4384 -10.8412 4.3957 23 9 11.4171 -11.7693 4.4715 24 6 10.7044 -9.5967 3.8502 25 6 9.7025 -8.6480 3.7732 26 1 -0.4850 0.8401 0.0004 27 1 0.6240 -2.5567 -0.8903 28 1 0.6245 -2.5571 0.8897 29 1 0.9450 -4.9822 -0.8913 30 1 0.9444 -4.9828 0.8887 31 1 3.3219 -5.7957 -0.8417 32 1 2.1817 -6.9375 -0.0904 33 1 4.5666 -6.9407 3.5212 34 1 5.7062 -5.7985 2.7695 35 1 6.6416 -8.0506 4.9792 36 1 7.7814 -6.9091 4.2265 37 1 7.1807 -10.4070 5.1618 38 1 8.9601 -12.1038 5.2898 39 1 11.6947 -9.3674 3.4850 40 1 9.9098 -7.6771 3.3481 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815170213.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:20 Heat of formation + Delta-G solvation = -175.856321 kcal Electronic energy + Delta-G solvation = -23137.773456 eV Core-core repulsion = 19150.745261 eV Total energy + Delta-G solvation = -3987.028195 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.098 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.93113 -41.54073 -40.08249 -38.77710 -37.49544 -34.95078 -33.52801 -32.31686 -32.12099 -30.89630 -28.96942 -27.74177 -24.60943 -24.05085 -23.96801 -22.73830 -22.18424 -18.97752 -18.73147 -18.65932 -18.06359 -17.93869 -17.42965 -17.20825 -16.91402 -16.64939 -16.46942 -16.39284 -16.16216 -15.22103 -15.15941 -15.13214 -14.74041 -14.65698 -14.45112 -14.22803 -13.88972 -13.67194 -13.29781 -13.22559 -13.04954 -12.89914 -12.75077 -12.66726 -12.45546 -12.03107 -11.96870 -11.78069 -11.69114 -11.26943 -11.09136 -10.90552 -10.27772 -10.08937 -9.54569 -8.74836 -8.32717 -6.44715 -0.27605 0.26451 0.55280 1.04133 1.40919 1.41851 1.48309 1.56561 1.71622 2.34401 2.66886 3.01438 3.04919 3.26380 3.50829 3.62613 3.70849 3.90288 3.95908 3.98488 4.09666 4.10335 4.24445 4.30092 4.40178 4.49991 4.53713 4.59653 4.65661 4.85444 4.96516 4.98527 5.14343 5.17316 5.22259 5.32955 5.46305 5.54320 5.87745 5.94789 6.48642 6.57866 6.79241 7.26968 8.79554 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.021555 B = 0.001681 C = 0.001596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.684346 B =16648.774896 C =17543.963276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.007 3.993 3 Si 0.982 3.018 4 H -0.265 1.265 5 H -0.272 1.272 6 H -0.271 1.271 7 C -0.550 4.550 8 H 0.060 0.940 9 C 0.207 3.793 10 O -0.409 6.409 11 C 0.053 3.947 12 C 0.079 3.921 13 O -0.352 6.352 14 C 0.475 3.525 15 O -0.524 6.524 16 C -0.096 4.096 17 S -0.226 6.226 18 C -0.049 4.049 19 C -0.091 4.091 20 C -0.073 4.073 21 C -0.159 4.159 22 C 0.081 3.919 23 F -0.150 7.150 24 C -0.160 4.160 25 C -0.076 4.076 26 H 0.271 0.729 27 H -0.008 1.008 28 H -0.009 1.009 29 H 0.082 0.918 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.110 0.890 33 H 0.152 0.848 34 H 0.142 0.858 35 H 0.117 0.883 36 H 0.112 0.888 37 H 0.155 0.845 38 H 0.151 0.849 39 H 0.149 0.851 40 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.949 -20.604 12.699 29.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.191 4.191 3 Si 0.805 3.195 4 H -0.189 1.189 5 H -0.197 1.197 6 H -0.196 1.196 7 C -0.587 4.587 8 H 0.079 0.921 9 C 0.132 3.868 10 O -0.329 6.329 11 C -0.023 4.023 12 C 0.006 3.994 13 O -0.268 6.268 14 C 0.318 3.682 15 O -0.413 6.413 16 C -0.244 4.244 17 S 0.003 5.997 18 C -0.196 4.196 19 C -0.093 4.093 20 C -0.093 4.093 21 C -0.178 4.178 22 C 0.061 3.939 23 F -0.129 7.129 24 C -0.179 4.179 25 C -0.095 4.095 26 H 0.080 0.920 27 H 0.010 0.990 28 H 0.009 0.991 29 H 0.100 0.900 30 H 0.077 0.923 31 H 0.090 0.910 32 H 0.128 0.872 33 H 0.170 0.830 34 H 0.160 0.840 35 H 0.135 0.865 36 H 0.131 0.869 37 H 0.172 0.828 38 H 0.169 0.831 39 H 0.167 0.833 40 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 17.187 -21.404 11.578 29.792 hybrid contribution -0.312 1.274 0.548 1.421 sum 16.875 -20.130 12.126 28.931 Atomic orbital electron populations 1.70068 1.07657 1.28604 1.50452 1.25934 0.95975 1.03299 0.93917 0.85146 0.78649 0.77387 0.78288 1.18913 1.19743 1.19570 1.21415 0.94100 0.90909 1.52288 0.92144 1.19885 0.88573 0.84362 0.93959 1.87860 1.35527 1.14189 1.95344 1.22654 0.94441 0.83285 1.01962 1.23222 0.93105 0.99283 0.83793 1.86568 1.43867 1.54531 1.41880 1.23187 0.78843 0.77513 0.88659 1.90688 1.67882 1.38630 1.44133 1.23150 0.99429 1.04697 0.97119 1.87997 1.39518 1.44701 1.27497 1.22468 0.98480 1.01857 0.96773 1.19401 0.93978 0.95237 1.00656 1.21199 0.99851 0.91451 0.96782 1.21370 0.91476 1.02128 1.02798 1.18076 0.86263 0.87530 1.02009 1.91480 1.61770 1.65159 1.94446 1.21356 1.02014 0.92305 1.02223 1.21193 0.91549 1.00105 0.96694 0.92016 0.99025 0.99106 0.90002 0.92306 0.91050 0.87246 0.83032 0.83965 0.86467 0.86921 0.82769 0.83121 0.83335 0.83169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.81 13.29 21.45 0.28 -54.52 16 2 C 0.01 0.42 5.46 84.65 0.46 0.88 16 3 Si 0.98 43.69 29.54 68.60 2.03 45.71 16 4 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 5 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 6 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 7 C -0.55 -32.38 9.43 25.60 0.24 -32.14 16 8 H 0.06 3.55 7.81 -2.91 -0.02 3.53 16 9 C 0.21 11.39 5.69 71.24 0.41 11.80 16 10 O -0.41 -19.65 10.30 -145.57 -1.50 -21.15 16 11 C 0.05 1.87 6.33 71.98 0.46 2.33 16 12 C 0.08 2.39 5.84 71.98 0.42 2.81 16 13 O -0.35 -10.88 10.19 -48.77 -0.50 -11.37 16 14 C 0.47 12.93 7.98 71.24 0.57 13.50 16 15 O -0.52 -17.07 15.61 21.96 0.34 -16.73 16 16 C -0.10 -1.70 6.53 71.24 0.47 -1.23 16 17 S -0.23 -4.22 20.86 -56.49 -1.18 -5.40 16 18 C -0.05 -0.49 6.07 71.24 0.43 -0.06 16 19 C -0.09 -1.10 5.14 -19.86 -0.10 -1.20 16 20 C -0.07 -0.83 9.70 22.26 0.22 -0.61 16 21 C -0.16 -2.02 10.03 22.31 0.22 -1.80 16 22 C 0.08 1.26 7.30 22.38 0.16 1.42 16 23 F -0.15 -2.67 17.27 44.97 0.78 -1.89 16 24 C -0.16 -2.15 10.03 22.31 0.22 -1.93 16 25 C -0.08 -0.92 9.70 22.26 0.22 -0.71 16 26 H 0.27 14.77 8.31 -92.70 -0.77 14.00 16 27 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 28 H -0.01 -0.50 8.14 -2.38 -0.02 -0.52 16 29 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 30 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.07 2.25 8.13 -2.39 -0.02 2.23 16 32 H 0.11 2.63 8.13 -2.39 -0.02 2.61 16 33 H 0.15 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.14 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.12 0.72 8.08 -2.39 -0.02 0.70 16 36 H 0.11 0.82 8.09 -2.39 -0.02 0.80 16 37 H 0.15 1.11 8.06 -2.91 -0.02 1.08 16 38 H 0.15 1.39 8.06 -2.91 -0.02 1.36 16 39 H 0.15 1.53 8.06 -2.91 -0.02 1.50 16 40 H 0.15 1.35 8.06 -2.91 -0.02 1.32 16 Total: -1.00 -73.95 373.24 5.69 -68.26 By element: Atomic # 1 Polarization: 2.98 SS G_CDS: 1.04 Total: 4.02 kcal Atomic # 6 Polarization: -11.33 SS G_CDS: 4.39 Total: -6.94 kcal Atomic # 7 Polarization: -54.81 SS G_CDS: 0.28 Total: -54.52 kcal Atomic # 8 Polarization: -47.60 SS G_CDS: -1.65 Total: -49.25 kcal Atomic # 9 Polarization: -2.67 SS G_CDS: 0.78 Total: -1.89 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.71 kcal Atomic # 16 Polarization: -4.22 SS G_CDS: -1.18 Total: -5.40 kcal Total: -73.95 5.69 -68.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815170213.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.594 kcal (2) G-P(sol) polarization free energy of solvation -73.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds