Wall clock time and date at job start Tue Mar 31 2020 14:58:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00081 * 2 1 4 4 H 1.48500 * 109.47428 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47380 * 300.00114 * 3 2 1 6 6 H 1.48498 * 109.47076 * 60.00216 * 3 2 1 7 7 C 1.37876 * 119.99920 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99794 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00292 * 0.02562 * 7 2 1 10 10 O 1.42891 * 109.47731 * 180.02562 * 9 7 2 11 11 C 1.42899 * 114.00468 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.47294 * 179.97438 * 11 10 9 13 13 O 1.45200 * 109.47046 * 64.99836 * 12 11 10 14 14 C 1.34228 * 116.99955 * 179.97438 * 13 12 11 15 15 O 1.20823 * 120.00031 * 0.02562 * 14 13 12 16 16 C 1.50705 * 119.99984 * 180.02562 * 14 13 12 17 17 C 1.53000 * 109.46929 * 180.02562 * 16 14 13 18 18 O 1.42898 * 109.46896 * 179.97438 * 17 16 14 19 19 C 1.35929 * 117.00101 * 180.02562 * 18 17 16 20 20 C 1.38701 * 120.05648 * 359.95940 * 19 18 17 21 21 C 1.38153 * 119.95853 * 180.02562 * 20 19 18 22 22 C 1.38285 * 120.07157 * 0.02562 * 21 20 19 23 23 C 1.38238 * 120.11971 * 0.02562 * 22 21 20 24 24 C 1.38255 * 120.04624 * 359.94924 * 23 22 21 25 25 Cl 1.73604 * 120.04140 * 180.02562 * 24 23 22 26 26 H 0.97005 * 119.99823 * 0.02562 * 1 2 3 27 27 H 1.09006 * 109.47131 * 59.99793 * 9 7 2 28 28 H 1.09003 * 109.47306 * 300.00343 * 9 7 2 29 29 H 1.09004 * 109.47189 * 59.99842 * 11 10 9 30 30 H 1.08994 * 109.47074 * 300.00036 * 11 10 9 31 31 H 1.09006 * 109.47118 * 304.99895 * 12 11 10 32 32 H 1.08997 * 109.46909 * 184.99924 * 12 11 10 33 33 H 1.08993 * 109.46757 * 59.99922 * 16 14 13 34 34 H 1.09001 * 109.46999 * 300.00339 * 16 14 13 35 35 H 1.09004 * 109.47148 * 60.00126 * 17 16 14 36 36 H 1.08996 * 109.47021 * 299.99734 * 17 16 14 37 37 H 1.08003 * 120.02367 * 0.04181 * 20 19 18 38 38 H 1.08001 * 119.96476 * 180.29683 * 21 20 19 39 39 H 1.08006 * 119.93616 * 179.97438 * 22 21 20 40 40 H 1.08008 * 119.97717 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 8 2.1795 -3.5853 -0.0015 11 6 1.5650 -4.8754 -0.0019 12 6 2.6480 -5.9562 -0.0023 13 8 3.3992 -5.8890 1.2384 14 6 4.3932 -6.7768 1.3978 15 8 4.6282 -7.5831 0.5291 16 6 5.2163 -6.7680 2.6602 17 6 6.2739 -7.8711 2.5872 18 8 7.0547 -7.8623 3.7840 19 6 8.0463 -8.7871 3.8807 20 6 8.2625 -9.6846 2.8457 21 6 9.2705 -10.6240 2.9464 22 6 10.0637 -10.6706 4.0782 23 6 9.8502 -9.7782 5.1121 24 6 8.8432 -8.8358 5.0163 25 17 8.5756 -7.7147 6.3145 26 1 -0.4850 0.8401 -0.0004 27 1 0.6247 -2.5563 -0.8920 28 1 0.6240 -2.5575 0.8880 29 1 0.9452 -4.9823 -0.8922 30 1 0.9445 -4.9826 0.8877 31 1 3.3216 -5.7954 -0.8441 32 1 2.1819 -6.9374 -0.0922 33 1 4.5672 -6.9425 3.5182 34 1 5.7074 -5.8007 2.7670 35 1 6.9229 -7.6961 1.7291 36 1 5.7831 -8.8385 2.4803 37 1 7.6434 -9.6491 1.9614 38 1 9.4421 -11.3198 2.1384 39 1 10.8509 -11.4062 4.1547 40 1 10.4708 -9.8170 5.9952 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815188179.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:05 Heat of formation + Delta-G solvation = -177.679371 kcal Electronic energy + Delta-G solvation = -23818.635446 eV Core-core repulsion = 19817.111702 eV Total energy + Delta-G solvation = -4001.523744 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.096 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.72550 -41.12626 -38.89033 -38.57687 -37.51219 -37.33460 -34.95857 -33.57088 -31.83153 -31.63587 -30.58226 -29.04388 -26.37706 -24.58562 -23.92954 -23.48404 -22.95287 -21.68561 -19.70614 -18.76868 -18.64496 -18.15238 -17.50881 -17.42769 -17.14510 -16.98601 -16.88173 -16.39165 -16.19679 -15.55666 -15.13241 -14.94761 -14.88735 -14.67861 -14.25788 -14.12524 -13.74754 -13.33533 -13.21611 -12.96856 -12.90406 -12.85772 -12.72682 -12.45482 -12.44616 -12.10808 -12.02808 -11.91030 -11.78949 -11.73940 -11.65470 -11.27528 -10.91092 -10.28194 -9.91745 -9.24868 -8.33514 -6.45408 0.12737 0.29872 1.04915 1.16956 1.31550 1.40046 1.41034 1.55755 2.29060 2.33720 2.62760 3.00508 3.05407 3.42659 3.69060 3.81060 3.82252 3.91185 3.95003 4.10135 4.14418 4.28768 4.33348 4.40941 4.44693 4.50841 4.57671 4.64589 4.68281 4.77925 4.84777 5.09011 5.16707 5.25761 5.36625 5.43920 5.53631 5.66707 5.94130 6.17259 6.48378 6.59521 6.78776 7.26196 8.78760 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.016133 B = 0.001899 C = 0.001757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.143410 B =14743.584166 C =15928.196049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.007 3.993 3 Si 0.982 3.018 4 H -0.266 1.266 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.549 4.549 8 H 0.060 0.940 9 C 0.207 3.793 10 O -0.409 6.409 11 C 0.051 3.949 12 C 0.079 3.921 13 O -0.357 6.357 14 C 0.473 3.527 15 O -0.535 6.535 16 C -0.110 4.110 17 C 0.077 3.923 18 O -0.316 6.316 19 C 0.120 3.880 20 C -0.206 4.206 21 C -0.075 4.075 22 C -0.143 4.143 23 C -0.078 4.078 24 C -0.091 4.091 25 Cl -0.070 7.070 26 H 0.271 0.729 27 H -0.007 1.007 28 H -0.010 1.010 29 H 0.083 0.917 30 H 0.057 0.943 31 H 0.073 0.927 32 H 0.112 0.888 33 H 0.136 0.864 34 H 0.126 0.874 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.145 0.855 38 H 0.158 0.842 39 H 0.163 0.837 40 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.597 -24.602 8.920 32.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.192 4.192 3 Si 0.805 3.195 4 H -0.190 1.190 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.587 4.587 8 H 0.078 0.922 9 C 0.132 3.868 10 O -0.330 6.330 11 C -0.025 4.025 12 C 0.005 3.995 13 O -0.273 6.273 14 C 0.317 3.683 15 O -0.426 6.426 16 C -0.147 4.147 17 C 0.002 3.998 18 O -0.230 6.230 19 C 0.073 3.927 20 C -0.225 4.225 21 C -0.093 4.093 22 C -0.161 4.161 23 C -0.096 4.096 24 C -0.118 4.118 25 Cl -0.041 7.041 26 H 0.080 0.920 27 H 0.011 0.989 28 H 0.008 0.992 29 H 0.100 0.900 30 H 0.075 0.925 31 H 0.092 0.908 32 H 0.130 0.870 33 H 0.154 0.846 34 H 0.144 0.856 35 H 0.093 0.907 36 H 0.100 0.900 37 H 0.163 0.837 38 H 0.175 0.825 39 H 0.180 0.820 40 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 18.575 -24.427 8.885 31.947 hybrid contribution -0.557 0.923 -0.282 1.114 sum 18.018 -23.504 8.603 30.840 Atomic orbital electron populations 1.70063 1.07632 1.28611 1.50456 1.25941 0.96002 1.03322 0.93947 0.85147 0.78615 0.77397 0.78315 1.18992 1.19599 1.19620 1.21409 0.94073 0.90933 1.52256 0.92205 1.19879 0.88570 0.84377 0.93943 1.87855 1.35541 1.14230 1.95337 1.22674 0.94609 0.83357 1.01893 1.23232 0.93109 0.99258 0.83862 1.86584 1.44056 1.54715 1.41925 1.23616 0.78631 0.77141 0.88872 1.90648 1.68410 1.38944 1.44586 1.21089 0.96796 1.02750 0.94100 1.22449 0.92312 0.99400 0.85677 1.86023 1.43596 1.52462 1.40881 1.18903 0.89260 0.90388 0.94100 1.21542 1.03253 0.98443 0.99277 1.21472 0.92647 0.96550 0.98594 1.21447 1.01500 1.00145 0.92991 1.21252 0.94962 0.92637 1.00776 1.20509 1.01633 0.99091 0.90554 1.98369 1.96270 1.61403 1.48088 0.92001 0.98926 0.99223 0.89962 0.92508 0.90815 0.87003 0.84627 0.85553 0.90660 0.90029 0.83687 0.82456 0.81956 0.82616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.40 13.29 21.45 0.28 -55.11 16 2 C 0.01 0.38 5.46 84.65 0.46 0.84 16 3 Si 0.98 44.42 29.54 68.60 2.03 46.45 16 4 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 5 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 6 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 7 C -0.55 -32.78 9.43 25.60 0.24 -32.54 16 8 H 0.06 3.57 7.81 -2.91 -0.02 3.54 16 9 C 0.21 11.54 5.69 71.23 0.41 11.94 16 10 O -0.41 -19.89 10.30 -145.57 -1.50 -21.39 16 11 C 0.05 1.81 6.33 71.98 0.46 2.27 16 12 C 0.08 2.31 5.84 71.98 0.42 2.73 16 13 O -0.36 -11.03 10.19 -48.75 -0.50 -11.52 16 14 C 0.47 12.21 7.96 71.24 0.57 12.78 16 15 O -0.54 -15.35 15.73 21.97 0.35 -15.01 16 16 C -0.11 -2.10 6.18 29.85 0.18 -1.91 16 17 C 0.08 1.38 4.03 71.98 0.29 1.67 16 18 O -0.32 -6.54 9.60 -92.75 -0.89 -7.43 16 19 C 0.12 2.30 6.68 22.52 0.15 2.45 16 20 C -0.21 -3.12 9.04 22.36 0.20 -2.92 16 21 C -0.07 -0.80 10.04 22.26 0.22 -0.58 16 22 C -0.14 -1.38 10.04 22.28 0.22 -1.15 16 23 C -0.08 -1.01 9.83 22.27 0.22 -0.79 16 24 C -0.09 -1.67 6.33 22.41 0.14 -1.53 16 25 Cl -0.07 -1.40 28.51 -2.72 -0.08 -1.47 16 26 H 0.27 14.94 8.31 -92.70 -0.77 14.17 16 27 H -0.01 -0.40 8.14 -2.38 -0.02 -0.42 16 28 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 29 H 0.08 2.58 8.14 -2.38 -0.02 2.56 16 30 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.07 2.23 8.13 -2.38 -0.02 2.21 16 32 H 0.11 2.55 8.13 -2.39 -0.02 2.53 16 33 H 0.14 2.13 8.14 -2.39 -0.02 2.11 16 34 H 0.13 2.33 8.14 -2.39 -0.02 2.31 16 35 H 0.08 1.35 7.62 -2.39 -0.02 1.33 16 36 H 0.08 1.34 7.62 -2.39 -0.02 1.32 16 37 H 0.15 1.93 6.30 -2.91 -0.02 1.91 16 38 H 0.16 0.83 8.06 -2.91 -0.02 0.80 16 39 H 0.16 0.57 8.06 -2.91 -0.02 0.55 16 40 H 0.16 1.37 8.06 -2.91 -0.02 1.34 16 Total: -1.00 -72.58 368.31 4.93 -67.65 By element: Atomic # 1 Polarization: 3.52 SS G_CDS: 1.05 Total: 4.57 kcal Atomic # 6 Polarization: -10.93 SS G_CDS: 4.19 Total: -6.74 kcal Atomic # 7 Polarization: -55.40 SS G_CDS: 0.28 Total: -55.11 kcal Atomic # 8 Polarization: -52.81 SS G_CDS: -2.54 Total: -55.35 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Atomic # 17 Polarization: -1.40 SS G_CDS: -0.08 Total: -1.47 kcal Total: -72.58 4.93 -67.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815188179.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.026 kcal (2) G-P(sol) polarization free energy of solvation -72.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds