Wall clock time and date at job start Tue Mar 31 2020 14:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99872 * 2 1 4 4 H 1.48507 * 109.47183 * 270.00170 * 3 2 1 5 5 H 1.48498 * 109.47178 * 30.00099 * 3 2 1 6 6 H 1.48504 * 109.47062 * 150.00539 * 3 2 1 7 7 C 1.37882 * 120.00220 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00024 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99845 * 359.97438 * 7 2 1 10 10 O 1.42898 * 109.47378 * 180.02562 * 9 7 2 11 11 C 1.42893 * 114.00101 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.46787 * 179.97438 * 11 10 9 13 13 O 1.45194 * 109.47448 * 65.00020 * 12 11 10 14 14 C 1.34227 * 117.00038 * 180.02562 * 13 12 11 15 15 O 1.20826 * 120.00337 * 359.97438 * 14 13 12 16 16 C 1.50700 * 119.99847 * 179.97438 * 14 13 12 17 17 C 1.53002 * 109.47462 * 179.97438 * 16 14 13 18 18 O 1.42893 * 109.47763 * 180.02562 * 17 16 14 19 19 C 1.35916 * 117.00323 * 179.97438 * 18 17 16 20 20 C 1.38728 * 120.04362 * 0.27384 * 19 18 17 21 21 C 1.38137 * 119.95782 * 180.23553 * 20 19 18 22 22 C 1.38365 * 120.04335 * 359.48598 * 21 20 19 23 23 Cl 1.73604 * 119.96019 * 180.27880 * 22 21 20 24 24 C 1.38371 * 120.08418 * 0.25849 * 22 21 20 25 25 C 1.38143 * 120.04298 * 0.02562 * 24 22 21 26 26 H 0.96997 * 120.00020 * 359.97438 * 1 2 3 27 27 H 1.09005 * 109.47285 * 60.00103 * 9 7 2 28 28 H 1.09008 * 109.47322 * 300.00406 * 9 7 2 29 29 H 1.09001 * 109.47703 * 60.00114 * 11 10 9 30 30 H 1.08997 * 109.47217 * 299.99484 * 11 10 9 31 31 H 1.08996 * 109.46934 * 304.99330 * 12 11 10 32 32 H 1.09006 * 109.46477 * 184.99670 * 12 11 10 33 33 H 1.09006 * 109.47301 * 59.99652 * 16 14 13 34 34 H 1.09000 * 109.47206 * 299.99642 * 16 14 13 35 35 H 1.08998 * 109.47155 * 59.99363 * 17 16 14 36 36 H 1.09008 * 109.46599 * 299.99809 * 17 16 14 37 37 H 1.07998 * 120.01718 * 359.97438 * 20 19 18 38 38 H 1.08002 * 119.98114 * 179.77139 * 21 20 19 39 39 H 1.08001 * 119.97793 * 180.02562 * 24 22 21 40 40 H 1.07998 * 120.01925 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4402 0.6999 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 2.1797 -3.5853 -0.0005 11 6 1.5652 -4.8754 -0.0011 12 6 2.6482 -5.9562 -0.0017 13 8 3.3996 -5.8892 1.2389 14 6 4.3943 -6.7763 1.3975 15 8 4.6292 -7.5824 0.5287 16 6 5.2183 -6.7668 2.6593 17 6 6.2758 -7.8701 2.5862 18 8 7.0567 -7.8615 3.7829 19 6 8.0474 -8.7870 3.8799 20 6 8.2669 -9.6809 2.8420 21 6 9.2711 -10.6239 2.9445 22 6 10.0648 -10.6703 4.0769 23 17 11.3309 -11.8516 4.2003 24 6 9.8509 -9.7761 5.1109 25 6 8.8439 -8.8354 5.0147 26 1 -0.4850 0.8400 0.0004 27 1 0.6241 -2.5568 -0.8903 28 1 0.6247 -2.5571 0.8897 29 1 0.9453 -4.9823 -0.8913 30 1 0.9448 -4.9827 0.8886 31 1 3.3216 -5.7952 -0.8435 32 1 2.1821 -6.9374 -0.0917 33 1 4.5699 -6.9418 3.5180 34 1 5.7089 -5.7993 2.7656 35 1 6.9241 -7.6956 1.7276 36 1 5.7848 -8.8375 2.4801 37 1 7.6502 -9.6423 1.9562 38 1 9.4398 -11.3224 2.1382 39 1 10.4718 -9.8136 5.9939 40 1 8.6775 -8.1374 5.8218 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815191881.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:09 Heat of formation + Delta-G solvation = -160.768022 kcal Electronic energy + Delta-G solvation = -23548.549732 eV Core-core repulsion = 19547.759319 eV Total energy + Delta-G solvation = -4000.790413 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.096 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.81388 -40.33813 -38.21960 -37.20824 -36.59569 -36.15214 -32.87324 -32.70121 -31.59036 -30.26720 -29.69632 -27.01598 -25.52882 -23.31861 -22.68394 -22.38669 -21.97331 -20.73564 -18.98210 -17.73820 -17.12280 -16.91739 -16.58860 -16.43283 -16.29319 -16.00032 -15.41376 -14.99091 -14.73358 -14.38111 -14.12148 -14.03465 -14.02093 -13.56656 -13.36949 -12.80299 -12.66987 -12.58310 -12.32917 -11.97605 -11.79124 -11.63759 -11.49305 -11.13892 -11.01943 -10.97603 -10.88792 -10.82304 -10.57300 -10.47284 -10.08788 -9.60175 -9.17041 -8.92199 -8.58417 -8.25700 -6.15214 -4.17121 0.74003 0.76914 1.75297 2.07635 2.18057 3.13011 3.14947 3.28011 3.33182 3.38488 4.16124 4.28834 4.31099 4.37283 4.50539 4.63889 4.64572 4.72528 4.84410 4.96563 5.04935 5.13052 5.21486 5.27992 5.33423 5.38201 5.42703 5.53509 5.76526 5.78286 5.79139 5.86064 6.01053 6.08739 6.45312 6.85860 7.00717 7.35414 7.64831 7.74537 8.08473 8.47503 8.95147 9.47814 10.96259 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.022365 B = 0.001581 C = 0.001509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.655775 B =17701.661048 C =18546.077344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.057 3.943 3 Si 0.909 3.091 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.516 4.516 8 H 0.067 0.933 9 C 0.194 3.806 10 O -0.391 6.391 11 C 0.061 3.939 12 C 0.075 3.925 13 O -0.336 6.336 14 C 0.470 3.530 15 O -0.519 6.519 16 C -0.117 4.117 17 C 0.070 3.930 18 O -0.309 6.309 19 C 0.141 3.859 20 C -0.196 4.196 21 C -0.068 4.068 22 C -0.075 4.075 23 Cl -0.074 7.074 24 C -0.071 4.071 25 C -0.140 4.140 26 H 0.264 0.736 27 H 0.006 0.994 28 H 0.008 0.992 29 H 0.064 0.936 30 H 0.051 0.949 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.119 0.881 34 H 0.122 0.878 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.141 0.859 38 H 0.136 0.864 39 H 0.140 0.860 40 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.730 -23.120 9.190 29.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.736 3.264 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.554 4.554 8 H 0.085 0.915 9 C 0.120 3.880 10 O -0.311 6.311 11 C -0.017 4.017 12 C 0.001 3.999 13 O -0.251 6.251 14 C 0.313 3.687 15 O -0.409 6.409 16 C -0.154 4.154 17 C -0.005 4.005 18 O -0.223 6.223 19 C 0.095 3.905 20 C -0.215 4.215 21 C -0.087 4.087 22 C -0.102 4.102 23 Cl -0.045 7.045 24 C -0.090 4.090 25 C -0.158 4.158 26 H 0.074 0.926 27 H 0.024 0.976 28 H 0.026 0.974 29 H 0.082 0.918 30 H 0.069 0.931 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.137 0.863 34 H 0.140 0.860 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.159 0.841 38 H 0.154 0.846 39 H 0.158 0.842 40 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 16.842 -23.126 9.049 30.006 hybrid contribution 0.019 0.591 -0.401 0.714 sum 16.861 -22.535 8.648 29.443 Atomic orbital electron populations 1.69957 1.06107 1.27240 1.50423 1.24949 0.94991 0.99463 0.95057 0.86323 0.79679 0.82162 0.78251 1.20455 1.21035 1.19591 1.21045 0.94104 0.89284 1.51013 0.91501 1.20248 0.88732 0.83455 0.95544 1.87913 1.35365 1.12607 1.95235 1.22330 0.93205 0.85477 1.00678 1.23274 0.93673 0.98947 0.83973 1.86590 1.43095 1.53664 1.41801 1.23101 0.79305 0.78100 0.88197 1.90667 1.68135 1.38383 1.43726 1.21068 0.96794 1.02166 0.95377 1.22518 0.92564 0.99453 0.85927 1.85999 1.43423 1.52142 1.40710 1.19045 0.88521 0.88678 0.94265 1.21334 1.01851 0.98189 1.00163 1.20866 0.93494 0.97830 0.96522 1.20806 0.95466 0.96277 0.97663 1.98369 1.50905 1.57065 1.98192 1.20871 0.97001 0.93156 0.97933 1.20418 0.96286 1.01398 0.97743 0.92603 0.97581 0.97448 0.91825 0.93108 0.90320 0.90275 0.86300 0.86002 0.90501 0.90626 0.84130 0.84591 0.84208 0.83987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.51 13.29 55.43 0.74 -25.77 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.91 21.61 29.54 -169.99 -5.02 16.59 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.52 -15.05 9.43 -34.44 -0.32 -15.38 16 8 H 0.07 1.94 7.81 -52.49 -0.41 1.53 16 9 C 0.19 5.23 5.69 36.01 0.20 5.43 16 10 O -0.39 -9.25 10.30 -38.80 -0.40 -9.65 16 11 C 0.06 1.06 6.33 37.16 0.24 1.30 16 12 C 0.07 1.11 5.84 37.16 0.22 1.33 16 13 O -0.34 -5.15 10.19 -42.01 -0.43 -5.58 16 14 C 0.47 6.03 7.96 36.01 0.29 6.31 16 15 O -0.52 -7.52 15.73 -18.75 -0.29 -7.82 16 16 C -0.12 -1.06 6.18 -27.88 -0.17 -1.24 16 17 C 0.07 0.61 4.03 37.16 0.15 0.76 16 18 O -0.31 -2.85 10.14 -19.48 -0.20 -3.05 16 19 C 0.14 1.23 6.69 -39.22 -0.26 0.97 16 20 C -0.20 -1.57 9.04 -39.44 -0.36 -1.93 16 21 C -0.07 -0.52 9.82 -39.57 -0.39 -0.91 16 22 C -0.08 -0.59 6.32 -39.49 -0.25 -0.84 16 23 Cl -0.07 -0.55 28.95 -51.86 -1.50 -2.05 16 24 C -0.07 -0.50 9.82 -39.57 -0.39 -0.89 16 25 C -0.14 -1.06 9.99 -39.44 -0.39 -1.46 16 26 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 27 H 0.01 0.18 8.14 -51.93 -0.42 -0.25 16 28 H 0.01 0.21 8.14 -51.92 -0.42 -0.21 16 29 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 30 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.08 1.19 8.13 -51.93 -0.42 0.77 16 32 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.12 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.12 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.08 0.66 7.61 -51.93 -0.40 0.27 16 36 H 0.08 0.61 7.63 -51.92 -0.40 0.22 16 37 H 0.14 0.99 6.30 -52.49 -0.33 0.66 16 38 H 0.14 0.82 8.06 -52.49 -0.42 0.39 16 39 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16 40 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 LS Contribution 369.01 15.07 5.56 5.56 Total: -1.00 -32.92 369.01 -8.40 -41.33 By element: Atomic # 1 Polarization: 0.77 SS G_CDS: -5.32 Total: -4.55 kcal Atomic # 6 Polarization: -3.47 SS G_CDS: -1.54 Total: -5.01 kcal Atomic # 7 Polarization: -26.51 SS G_CDS: 0.74 Total: -25.77 kcal Atomic # 8 Polarization: -24.77 SS G_CDS: -1.32 Total: -26.09 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 17 Polarization: -0.55 SS G_CDS: -1.50 Total: -2.05 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.92 -8.40 -41.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815191881.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.441 kcal (2) G-P(sol) polarization free energy of solvation -32.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds