Wall clock time and date at job start Tue Mar 31 2020 14:58:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99872 * 2 1 4 4 H 1.48507 * 109.47183 * 270.00170 * 3 2 1 5 5 H 1.48498 * 109.47178 * 30.00099 * 3 2 1 6 6 H 1.48504 * 109.47062 * 150.00539 * 3 2 1 7 7 C 1.37882 * 120.00220 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00024 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99845 * 359.97438 * 7 2 1 10 10 O 1.42898 * 109.47378 * 180.02562 * 9 7 2 11 11 C 1.42893 * 114.00101 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.46787 * 179.97438 * 11 10 9 13 13 O 1.45194 * 109.47448 * 65.00020 * 12 11 10 14 14 C 1.34227 * 117.00038 * 180.02562 * 13 12 11 15 15 O 1.20826 * 120.00337 * 359.97438 * 14 13 12 16 16 C 1.50700 * 119.99847 * 179.97438 * 14 13 12 17 17 C 1.53002 * 109.47462 * 179.97438 * 16 14 13 18 18 O 1.42893 * 109.47763 * 180.02562 * 17 16 14 19 19 C 1.35916 * 117.00323 * 179.97438 * 18 17 16 20 20 C 1.38728 * 120.04362 * 0.27384 * 19 18 17 21 21 C 1.38137 * 119.95782 * 180.23553 * 20 19 18 22 22 C 1.38365 * 120.04335 * 359.48598 * 21 20 19 23 23 Cl 1.73604 * 119.96019 * 180.27880 * 22 21 20 24 24 C 1.38371 * 120.08418 * 0.25849 * 22 21 20 25 25 C 1.38143 * 120.04298 * 0.02562 * 24 22 21 26 26 H 0.96997 * 120.00020 * 359.97438 * 1 2 3 27 27 H 1.09005 * 109.47285 * 60.00103 * 9 7 2 28 28 H 1.09008 * 109.47322 * 300.00406 * 9 7 2 29 29 H 1.09001 * 109.47703 * 60.00114 * 11 10 9 30 30 H 1.08997 * 109.47217 * 299.99484 * 11 10 9 31 31 H 1.08996 * 109.46934 * 304.99330 * 12 11 10 32 32 H 1.09006 * 109.46477 * 184.99670 * 12 11 10 33 33 H 1.09006 * 109.47301 * 59.99652 * 16 14 13 34 34 H 1.09000 * 109.47206 * 299.99642 * 16 14 13 35 35 H 1.08998 * 109.47155 * 59.99363 * 17 16 14 36 36 H 1.09008 * 109.46599 * 299.99809 * 17 16 14 37 37 H 1.07998 * 120.01718 * 359.97438 * 20 19 18 38 38 H 1.08002 * 119.98114 * 179.77139 * 21 20 19 39 39 H 1.08001 * 119.97793 * 180.02562 * 24 22 21 40 40 H 1.07998 * 120.01925 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4402 0.6999 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 2.1797 -3.5853 -0.0005 11 6 1.5652 -4.8754 -0.0011 12 6 2.6482 -5.9562 -0.0017 13 8 3.3996 -5.8892 1.2389 14 6 4.3943 -6.7763 1.3975 15 8 4.6292 -7.5824 0.5287 16 6 5.2183 -6.7668 2.6593 17 6 6.2758 -7.8701 2.5862 18 8 7.0567 -7.8615 3.7829 19 6 8.0474 -8.7870 3.8799 20 6 8.2669 -9.6809 2.8420 21 6 9.2711 -10.6239 2.9445 22 6 10.0648 -10.6703 4.0769 23 17 11.3309 -11.8516 4.2003 24 6 9.8509 -9.7761 5.1109 25 6 8.8439 -8.8354 5.0147 26 1 -0.4850 0.8400 0.0004 27 1 0.6241 -2.5568 -0.8903 28 1 0.6247 -2.5571 0.8897 29 1 0.9453 -4.9823 -0.8913 30 1 0.9448 -4.9827 0.8886 31 1 3.3216 -5.7952 -0.8435 32 1 2.1821 -6.9374 -0.0917 33 1 4.5699 -6.9418 3.5180 34 1 5.7089 -5.7993 2.7656 35 1 6.9241 -7.6956 1.7276 36 1 5.7848 -8.8375 2.4801 37 1 7.6502 -9.6423 1.9562 38 1 9.4398 -11.3224 2.1382 39 1 10.4718 -9.8136 5.9939 40 1 8.6775 -8.1374 5.8218 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815191881.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:08 Heat of formation + Delta-G solvation = -179.232824 kcal Electronic energy + Delta-G solvation = -23549.350426 eV Core-core repulsion = 19547.759319 eV Total energy + Delta-G solvation = -4001.591107 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.096 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.71308 -41.12722 -38.93750 -38.67240 -37.53189 -37.15773 -34.94864 -33.54129 -32.17782 -31.60894 -30.40724 -29.03334 -26.35023 -24.57714 -24.02396 -23.52680 -22.90404 -21.68741 -19.66680 -18.75495 -18.63370 -18.13741 -17.60198 -17.44828 -17.15433 -17.03002 -16.85116 -16.37565 -16.19054 -15.56384 -15.13415 -14.86943 -14.76341 -14.56353 -14.29629 -14.14964 -13.77794 -13.53809 -13.27191 -13.19310 -12.95345 -12.91446 -12.70032 -12.45153 -12.43446 -12.24467 -12.01774 -11.77063 -11.70797 -11.64817 -11.59499 -11.28348 -10.89650 -10.27403 -10.16134 -9.19310 -8.32463 -6.44593 0.15094 0.19830 1.06722 1.16422 1.32311 1.40988 1.43224 1.55385 2.32667 2.34508 2.56806 3.01670 3.06109 3.43814 3.69774 3.77117 3.83735 3.87940 3.91903 4.07723 4.10883 4.26446 4.32200 4.41647 4.48589 4.51826 4.60260 4.66201 4.69591 4.85565 4.89496 4.95809 5.17424 5.18431 5.22614 5.38507 5.52470 5.54227 5.94916 6.22636 6.49194 6.61004 6.79338 7.27085 8.79562 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.022365 B = 0.001581 C = 0.001509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.655775 B =17701.661048 C =18546.077344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.008 3.992 3 Si 0.982 3.018 4 H -0.268 1.268 5 H -0.274 1.274 6 H -0.265 1.265 7 C -0.551 4.551 8 H 0.060 0.940 9 C 0.208 3.792 10 O -0.409 6.409 11 C 0.051 3.949 12 C 0.079 3.921 13 O -0.356 6.356 14 C 0.471 3.529 15 O -0.537 6.537 16 C -0.109 4.109 17 C 0.074 3.926 18 O -0.316 6.316 19 C 0.123 3.877 20 C -0.202 4.202 21 C -0.074 4.074 22 C -0.084 4.084 23 Cl -0.073 7.073 24 C -0.071 4.071 25 C -0.144 4.144 26 H 0.271 0.729 27 H -0.008 1.008 28 H -0.010 1.010 29 H 0.082 0.918 30 H 0.057 0.943 31 H 0.073 0.927 32 H 0.111 0.889 33 H 0.139 0.861 34 H 0.129 0.871 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.147 0.853 38 H 0.148 0.852 39 H 0.159 0.841 40 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.737 -23.156 9.778 30.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.190 4.190 3 Si 0.805 3.195 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.189 1.189 7 C -0.589 4.589 8 H 0.079 0.921 9 C 0.133 3.867 10 O -0.329 6.329 11 C -0.025 4.025 12 C 0.005 3.995 13 O -0.272 6.272 14 C 0.316 3.684 15 O -0.428 6.428 16 C -0.147 4.147 17 C -0.001 4.001 18 O -0.230 6.230 19 C 0.078 3.922 20 C -0.221 4.221 21 C -0.093 4.093 22 C -0.111 4.111 23 Cl -0.045 7.045 24 C -0.089 4.089 25 C -0.162 4.162 26 H 0.080 0.920 27 H 0.010 0.990 28 H 0.008 0.992 29 H 0.099 0.901 30 H 0.075 0.925 31 H 0.091 0.909 32 H 0.129 0.871 33 H 0.156 0.844 34 H 0.147 0.853 35 H 0.092 0.908 36 H 0.098 0.902 37 H 0.164 0.836 38 H 0.166 0.834 39 H 0.177 0.823 40 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 17.854 -23.192 9.638 30.814 hybrid contribution -0.292 0.479 -0.571 0.800 sum 17.562 -22.713 9.067 30.109 Atomic orbital electron populations 1.70055 1.07658 1.28671 1.50370 1.25926 0.95963 1.03273 0.93887 0.85204 0.78401 0.77131 0.78807 1.19356 1.19874 1.18941 1.21395 0.94117 0.90944 1.52422 0.92127 1.19873 0.88559 0.84366 0.93923 1.87854 1.35532 1.14221 1.95336 1.22670 0.94609 0.83362 1.01883 1.23219 0.93105 0.99217 0.83913 1.86580 1.44020 1.54785 1.41843 1.23700 0.78656 0.77103 0.88984 1.90655 1.68470 1.38991 1.44668 1.21105 0.96742 1.02788 0.94023 1.22455 0.92383 0.99421 0.85822 1.85967 1.43722 1.52531 1.40770 1.19276 0.88895 0.89053 0.95024 1.21446 1.02121 0.98228 1.00317 1.21053 0.93317 0.97970 0.96959 1.20975 0.95588 0.96520 0.98015 1.98368 1.50844 1.57047 1.98193 1.21109 0.96893 0.92557 0.98378 1.20640 0.96090 1.01694 0.97807 0.92009 0.99010 0.99192 0.90053 0.92456 0.90877 0.87080 0.84352 0.85275 0.90782 0.90173 0.83584 0.83382 0.82344 0.82704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.95 13.29 21.45 0.28 -54.66 16 2 C 0.01 0.47 5.46 84.66 0.46 0.93 16 3 Si 0.98 43.86 29.54 68.60 2.03 45.88 16 4 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 5 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 6 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 7 C -0.55 -32.57 9.43 25.60 0.24 -32.32 16 8 H 0.06 3.56 7.81 -2.91 -0.02 3.54 16 9 C 0.21 11.44 5.69 71.24 0.41 11.85 16 10 O -0.41 -19.61 10.30 -145.57 -1.50 -21.11 16 11 C 0.05 1.79 6.33 71.98 0.46 2.24 16 12 C 0.08 2.26 5.84 71.98 0.42 2.69 16 13 O -0.36 -10.64 10.19 -48.74 -0.50 -11.14 16 14 C 0.47 11.62 7.96 71.24 0.57 12.18 16 15 O -0.54 -15.05 15.73 21.96 0.35 -14.71 16 16 C -0.11 -1.85 6.18 29.85 0.18 -1.67 16 17 C 0.07 1.20 4.03 71.98 0.29 1.49 16 18 O -0.32 -5.48 10.14 -92.61 -0.94 -6.42 16 19 C 0.12 2.04 6.69 22.50 0.15 2.19 16 20 C -0.20 -3.08 9.04 22.36 0.20 -2.88 16 21 C -0.07 -1.06 9.82 22.28 0.22 -0.84 16 22 C -0.08 -1.22 6.32 22.33 0.14 -1.07 16 23 Cl -0.07 -1.01 28.95 -2.72 -0.08 -1.09 16 24 C -0.07 -0.90 9.82 22.28 0.22 -0.68 16 25 C -0.14 -2.01 9.99 22.36 0.22 -1.78 16 26 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 27 H -0.01 -0.44 8.14 -2.38 -0.02 -0.46 16 28 H -0.01 -0.55 8.14 -2.38 -0.02 -0.57 16 29 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 30 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.07 2.18 8.13 -2.39 -0.02 2.16 16 32 H 0.11 2.48 8.14 -2.38 -0.02 2.46 16 33 H 0.14 1.82 8.14 -2.38 -0.02 1.80 16 34 H 0.13 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.07 1.23 7.61 -2.39 -0.02 1.21 16 36 H 0.08 1.21 7.63 -2.38 -0.02 1.19 16 37 H 0.15 1.96 6.30 -2.91 -0.02 1.94 16 38 H 0.15 1.63 8.06 -2.91 -0.02 1.61 16 39 H 0.16 1.32 8.06 -2.91 -0.02 1.30 16 40 H 0.16 1.66 8.06 -2.91 -0.02 1.64 16 Total: -1.00 -70.04 369.01 4.87 -65.17 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: 1.05 Total: 5.77 kcal Atomic # 6 Polarization: -11.87 SS G_CDS: 4.18 Total: -7.68 kcal Atomic # 7 Polarization: -54.95 SS G_CDS: 0.28 Total: -54.66 kcal Atomic # 8 Polarization: -50.79 SS G_CDS: -2.59 Total: -53.37 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.88 kcal Atomic # 17 Polarization: -1.01 SS G_CDS: -0.08 Total: -1.09 kcal Total: -70.04 4.87 -65.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815191881.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.067 kcal (2) G-P(sol) polarization free energy of solvation -70.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds