Wall clock time and date at job start Tue Mar 31 2020 15:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38286 * 120.03227 * 2 1 4 4 Cl 1.73599 * 119.98567 * 359.97310 * 3 2 1 5 5 C 1.38366 * 120.02492 * 180.25304 * 3 2 1 6 6 C 1.38273 * 120.09750 * 359.44986 * 5 3 2 7 7 C 1.38132 * 120.06795 * 0.54330 * 6 5 3 8 8 C 1.38687 * 120.03354 * 179.97438 * 2 1 3 9 9 O 1.35897 * 120.04805 * 0.02562 * 8 2 1 10 10 C 1.42900 * 116.99820 * 179.97438 * 9 8 2 11 11 C 1.50700 * 109.47156 * 179.97438 * 10 9 8 12 12 O 1.20832 * 119.99908 * 359.97438 * 11 10 9 13 13 O 1.34234 * 120.00012 * 179.97438 * 11 10 9 14 14 C 1.45208 * 116.99717 * 179.97438 * 13 11 10 15 15 C 1.53000 * 109.46885 * 180.02562 * 14 13 11 16 16 O 1.42901 * 109.46842 * 65.00447 * 15 14 13 17 17 C 1.42904 * 113.99802 * 180.02562 * 16 15 14 18 18 C 1.50700 * 109.46874 * 179.97438 * 17 16 15 19 19 H 1.07998 * 120.00302 * 359.97438 * 18 17 16 20 20 C 1.37881 * 119.99984 * 179.97438 * 18 17 16 21 21 N 1.31514 * 119.99645 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00356 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47245 * 89.99965 * 22 20 18 24 24 H 1.48505 * 109.47212 * 210.00549 * 22 20 18 25 25 H 1.48500 * 109.46771 * 329.99917 * 22 20 18 26 26 H 1.09003 * 109.46968 * 90.00072 * 1 2 3 27 27 H 1.09002 * 109.47420 * 210.00280 * 1 2 3 28 28 H 1.08998 * 109.47420 * 330.00092 * 1 2 3 29 29 H 1.07995 * 119.94658 * 179.72273 * 5 3 2 30 30 H 1.08000 * 119.95923 * 180.25608 * 6 5 3 31 31 H 1.07996 * 120.01303 * 179.70589 * 7 6 5 32 32 H 1.09001 * 109.47003 * 299.99061 * 10 9 8 33 33 H 1.08995 * 109.47287 * 59.99829 * 10 9 8 34 34 H 1.08993 * 109.47054 * 300.00554 * 14 13 11 35 35 H 1.08997 * 109.46668 * 60.00495 * 14 13 11 36 36 H 1.08999 * 109.46917 * 184.99954 * 15 14 13 37 37 H 1.09002 * 109.47064 * 305.00624 * 15 14 13 38 38 H 1.09005 * 109.46593 * 299.99222 * 17 16 15 39 39 H 1.08998 * 109.47427 * 59.99753 * 17 16 15 40 40 H 0.96999 * 120.00031 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1991 1.1972 0.0000 4 17 1.3316 2.7009 -0.0007 5 6 3.5828 1.1970 -0.0053 6 6 4.2760 0.0007 0.0009 7 6 3.5887 -1.1975 0.0011 8 6 2.2011 -1.2007 0.0005 9 8 1.5233 -2.3785 0.0005 10 6 2.3034 -3.5759 0.0005 11 6 1.3871 -4.7723 0.0012 12 8 0.1890 -4.6157 0.0021 13 8 1.9020 -6.0120 0.0008 14 6 0.9599 -7.1170 0.0020 15 6 1.7269 -8.4409 0.0020 16 8 2.4592 -8.5671 1.2225 17 6 3.2151 -9.7756 1.3245 18 6 3.9437 -9.8025 2.6434 19 1 3.8403 -8.9790 3.3344 20 6 4.7424 -10.8786 2.9679 21 7 4.8687 -11.8811 2.1262 22 14 5.6462 -10.9117 4.6023 23 1 4.7885 -11.5558 5.6293 24 1 6.9067 -11.6830 4.4554 25 1 5.9620 -9.5226 5.0215 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3634 -0.8900 0.5139 28 1 -0.3634 0.8900 0.5138 29 1 4.1220 2.1327 -0.0098 30 1 5.3560 0.0032 0.0009 31 1 4.1311 -2.1314 0.0011 32 1 2.9321 -3.5999 -0.8895 33 1 2.9322 -3.5998 0.8905 34 1 0.3342 -7.0600 0.8926 35 1 0.3323 -7.0603 -0.8873 36 1 1.0230 -9.2685 -0.0867 37 1 2.4184 -8.4602 -0.8404 38 1 2.5424 -10.6311 1.2631 39 1 3.9375 -9.8222 0.5097 40 1 5.4303 -12.6383 2.3546 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815211653.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:10:10 Heat of formation + Delta-G solvation = -154.100409 kcal Electronic energy + Delta-G solvation = -24151.138644 eV Core-core repulsion = 20150.637360 eV Total energy + Delta-G solvation = -4000.501283 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.096 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.00751 -40.20997 -38.19576 -37.10933 -36.63296 -36.07895 -33.26330 -32.82430 -30.85009 -30.29629 -28.88412 -27.13882 -26.91777 -23.43874 -22.50107 -22.21621 -22.08849 -20.97785 -18.77150 -17.68757 -17.16793 -17.08943 -16.49366 -16.16297 -16.10831 -15.88185 -15.28776 -15.26811 -14.72359 -14.44139 -14.17791 -13.95538 -13.70232 -13.33707 -13.02137 -12.77358 -12.71538 -12.61299 -12.13042 -12.02625 -11.87451 -11.70830 -11.51118 -11.30523 -11.14222 -11.00864 -10.89389 -10.82356 -10.52163 -10.46069 -10.09993 -9.18315 -9.10910 -8.93615 -8.63851 -8.27084 -6.16392 -4.18312 0.67955 0.88979 1.56694 2.00978 2.05397 3.16047 3.27039 3.28368 3.32221 3.37256 4.22542 4.27551 4.41249 4.48204 4.57076 4.60471 4.67403 4.69277 4.83669 4.93737 5.11890 5.20261 5.22146 5.31374 5.36884 5.43726 5.74859 5.77300 5.83351 5.85215 5.90779 5.94517 5.97859 6.11399 6.40252 6.81212 6.99443 7.34124 7.64523 7.73272 8.07177 8.45979 8.93892 9.46580 10.95054 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.018106 B = 0.001951 C = 0.001816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.083368 B =14349.678159 C =15412.173266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.103 4.103 3 C -0.002 4.002 4 Cl -0.060 7.060 5 C -0.144 4.144 6 C -0.072 4.072 7 C -0.200 4.200 8 C 0.142 3.858 9 O -0.287 6.287 10 C 0.066 3.934 11 C 0.464 3.536 12 O -0.492 6.492 13 O -0.336 6.336 14 C 0.077 3.923 15 C 0.061 3.939 16 O -0.391 6.391 17 C 0.194 3.806 18 C -0.516 4.516 19 H 0.067 0.933 20 C 0.056 3.944 21 N -0.898 5.898 22 Si 0.909 3.091 23 H -0.278 1.278 24 H -0.285 1.285 25 H -0.271 1.271 26 H 0.074 0.926 27 H 0.079 0.921 28 H 0.072 0.928 29 H 0.135 0.865 30 H 0.138 0.862 31 H 0.140 0.860 32 H 0.109 0.891 33 H 0.112 0.888 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.066 0.934 37 H 0.051 0.949 38 H 0.007 0.993 39 H 0.008 0.992 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.346 25.762 -8.019 27.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.105 4.105 3 C -0.029 4.029 4 Cl -0.031 7.031 5 C -0.163 4.163 6 C -0.090 4.090 7 C -0.219 4.219 8 C 0.096 3.904 9 O -0.200 6.200 10 C -0.010 4.010 11 C 0.305 3.695 12 O -0.379 6.379 13 O -0.252 6.252 14 C 0.003 3.997 15 C -0.017 4.017 16 O -0.311 6.311 17 C 0.120 3.880 18 C -0.554 4.554 19 H 0.085 0.915 20 C -0.145 4.145 21 N -0.537 5.537 22 Si 0.736 3.264 23 H -0.204 1.204 24 H -0.210 1.210 25 H -0.196 1.196 26 H 0.093 0.907 27 H 0.098 0.902 28 H 0.090 0.910 29 H 0.153 0.847 30 H 0.155 0.845 31 H 0.157 0.843 32 H 0.127 0.873 33 H 0.130 0.870 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.083 0.917 37 H 0.069 0.931 38 H 0.024 0.976 39 H 0.026 0.974 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.923 25.811 -7.891 27.436 hybrid contribution 0.624 -0.435 0.558 0.944 sum -4.299 25.376 -7.333 26.762 Atomic orbital electron populations 1.20727 0.89332 1.03752 1.03093 1.18986 0.97384 0.88757 1.05364 1.20489 0.92149 0.86373 1.03912 1.98368 1.77011 1.31000 1.96727 1.20977 0.91729 0.99415 1.04132 1.20900 1.00305 0.90890 0.96883 1.21450 0.92690 1.00322 1.07455 1.18528 0.90159 0.84876 0.96793 1.86065 1.34259 1.11197 1.88518 1.21959 0.92231 0.80882 1.05911 1.22721 0.88110 0.84883 0.73756 1.90702 1.16435 1.86674 1.44135 1.86544 1.41485 1.14042 1.83172 1.23313 0.90691 0.82738 1.02907 1.22336 0.95727 0.92986 0.90606 1.87916 1.63927 1.44456 1.34838 1.20251 0.89567 0.80585 0.97591 1.21035 1.27294 1.05004 1.02061 0.91514 1.24957 0.96588 0.95113 0.97873 1.69956 1.39462 1.08382 1.35907 0.86320 0.78904 0.78273 0.82901 1.20437 1.21042 1.19611 0.90734 0.90237 0.90964 0.84700 0.84467 0.84270 0.87320 0.87044 0.90173 0.90105 0.91664 0.93061 0.97551 0.97439 0.92595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.06 9.39 36.01 0.34 -0.72 16 2 C -0.10 -1.04 5.90 -104.44 -0.62 -1.65 16 3 C 0.00 -0.02 6.31 -39.52 -0.25 -0.27 16 4 Cl -0.06 -0.50 27.29 -51.86 -1.42 -1.91 16 5 C -0.14 -1.10 9.83 -39.52 -0.39 -1.49 16 6 C -0.07 -0.51 10.04 -39.61 -0.40 -0.91 16 7 C -0.20 -1.64 9.04 -39.43 -0.36 -1.99 16 8 C 0.14 1.45 6.66 -39.22 -0.26 1.19 16 9 O -0.29 -3.32 8.71 -39.37 -0.34 -3.67 16 10 C 0.07 0.66 5.33 36.01 0.19 0.86 16 11 C 0.46 6.42 8.03 36.01 0.29 6.71 16 12 O -0.49 -8.11 16.25 -25.48 -0.41 -8.53 16 13 O -0.34 -5.14 10.19 -42.03 -0.43 -5.57 16 14 C 0.08 1.14 5.85 37.16 0.22 1.36 16 15 C 0.06 1.06 6.33 37.16 0.24 1.29 16 16 O -0.39 -9.16 10.30 -38.80 -0.40 -9.56 16 17 C 0.19 5.18 5.69 36.01 0.20 5.38 16 18 C -0.52 -14.92 9.43 -34.44 -0.32 -15.24 16 19 H 0.07 1.92 7.81 -52.49 -0.41 1.51 16 20 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 21 N -0.90 -26.37 13.29 55.43 0.74 -25.63 16 22 Si 0.91 21.48 29.54 -169.99 -5.02 16.46 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 25 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 26 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.08 0.83 7.53 -51.93 -0.39 0.44 16 28 H 0.07 0.60 6.90 -51.93 -0.36 0.25 16 29 H 0.14 0.78 8.06 -52.49 -0.42 0.35 16 30 H 0.14 0.63 8.06 -52.49 -0.42 0.21 16 31 H 0.14 0.87 6.30 -52.49 -0.33 0.54 16 32 H 0.11 0.79 7.66 -51.93 -0.40 0.39 16 33 H 0.11 0.93 7.66 -51.93 -0.40 0.53 16 34 H 0.08 1.23 8.13 -51.93 -0.42 0.81 16 35 H 0.08 0.99 8.13 -51.93 -0.42 0.57 16 36 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 39 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 40 H 0.26 7.26 8.31 -40.82 -0.34 6.93 16 LS Contribution 365.45 15.07 5.51 5.51 Total: -1.00 -33.49 365.45 -8.22 -41.71 By element: Atomic # 1 Polarization: 0.39 SS G_CDS: -5.23 Total: -4.83 kcal Atomic # 6 Polarization: -2.77 SS G_CDS: -1.21 Total: -3.99 kcal Atomic # 7 Polarization: -26.37 SS G_CDS: 0.74 Total: -25.63 kcal Atomic # 8 Polarization: -25.74 SS G_CDS: -1.58 Total: -27.32 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 17 Polarization: -0.50 SS G_CDS: -1.42 Total: -1.91 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.49 -8.22 -41.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815211653.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.389 kcal (2) G-P(sol) polarization free energy of solvation -33.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds