Wall clock time and date at job start Tue Mar 31 2020 15:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38286 * 120.03227 * 2 1 4 4 Cl 1.73599 * 119.98567 * 359.97310 * 3 2 1 5 5 C 1.38366 * 120.02492 * 180.25304 * 3 2 1 6 6 C 1.38273 * 120.09750 * 359.44986 * 5 3 2 7 7 C 1.38132 * 120.06795 * 0.54330 * 6 5 3 8 8 C 1.38687 * 120.03354 * 179.97438 * 2 1 3 9 9 O 1.35897 * 120.04805 * 0.02562 * 8 2 1 10 10 C 1.42900 * 116.99820 * 179.97438 * 9 8 2 11 11 C 1.50700 * 109.47156 * 179.97438 * 10 9 8 12 12 O 1.20832 * 119.99908 * 359.97438 * 11 10 9 13 13 O 1.34234 * 120.00012 * 179.97438 * 11 10 9 14 14 C 1.45208 * 116.99717 * 179.97438 * 13 11 10 15 15 C 1.53000 * 109.46885 * 180.02562 * 14 13 11 16 16 O 1.42901 * 109.46842 * 65.00447 * 15 14 13 17 17 C 1.42904 * 113.99802 * 180.02562 * 16 15 14 18 18 C 1.50700 * 109.46874 * 179.97438 * 17 16 15 19 19 H 1.07998 * 120.00302 * 359.97438 * 18 17 16 20 20 C 1.37881 * 119.99984 * 179.97438 * 18 17 16 21 21 N 1.31514 * 119.99645 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00356 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47245 * 89.99965 * 22 20 18 24 24 H 1.48505 * 109.47212 * 210.00549 * 22 20 18 25 25 H 1.48500 * 109.46771 * 329.99917 * 22 20 18 26 26 H 1.09003 * 109.46968 * 90.00072 * 1 2 3 27 27 H 1.09002 * 109.47420 * 210.00280 * 1 2 3 28 28 H 1.08998 * 109.47420 * 330.00092 * 1 2 3 29 29 H 1.07995 * 119.94658 * 179.72273 * 5 3 2 30 30 H 1.08000 * 119.95923 * 180.25608 * 6 5 3 31 31 H 1.07996 * 120.01303 * 179.70589 * 7 6 5 32 32 H 1.09001 * 109.47003 * 299.99061 * 10 9 8 33 33 H 1.08995 * 109.47287 * 59.99829 * 10 9 8 34 34 H 1.08993 * 109.47054 * 300.00554 * 14 13 11 35 35 H 1.08997 * 109.46668 * 60.00495 * 14 13 11 36 36 H 1.08999 * 109.46917 * 184.99954 * 15 14 13 37 37 H 1.09002 * 109.47064 * 305.00624 * 15 14 13 38 38 H 1.09005 * 109.46593 * 299.99222 * 17 16 15 39 39 H 1.08998 * 109.47427 * 59.99753 * 17 16 15 40 40 H 0.96999 * 120.00031 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1991 1.1972 0.0000 4 17 1.3316 2.7009 -0.0007 5 6 3.5828 1.1970 -0.0053 6 6 4.2760 0.0007 0.0009 7 6 3.5887 -1.1975 0.0011 8 6 2.2011 -1.2007 0.0005 9 8 1.5233 -2.3785 0.0005 10 6 2.3034 -3.5759 0.0005 11 6 1.3871 -4.7723 0.0012 12 8 0.1890 -4.6157 0.0021 13 8 1.9020 -6.0120 0.0008 14 6 0.9599 -7.1170 0.0020 15 6 1.7269 -8.4409 0.0020 16 8 2.4592 -8.5671 1.2225 17 6 3.2151 -9.7756 1.3245 18 6 3.9437 -9.8025 2.6434 19 1 3.8403 -8.9790 3.3344 20 6 4.7424 -10.8786 2.9679 21 7 4.8687 -11.8811 2.1262 22 14 5.6462 -10.9117 4.6023 23 1 4.7885 -11.5558 5.6293 24 1 6.9067 -11.6830 4.4554 25 1 5.9620 -9.5226 5.0215 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3634 -0.8900 0.5139 28 1 -0.3634 0.8900 0.5138 29 1 4.1220 2.1327 -0.0098 30 1 5.3560 0.0032 0.0009 31 1 4.1311 -2.1314 0.0011 32 1 2.9321 -3.5999 -0.8895 33 1 2.9322 -3.5998 0.8905 34 1 0.3342 -7.0600 0.8926 35 1 0.3323 -7.0603 -0.8873 36 1 1.0230 -9.2685 -0.0867 37 1 2.4184 -8.4602 -0.8404 38 1 2.5424 -10.6311 1.2631 39 1 3.9375 -9.8222 0.5097 40 1 5.4303 -12.6383 2.3546 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815211653.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:10:09 Heat of formation + Delta-G solvation = -172.925719 kcal Electronic energy + Delta-G solvation = -24151.954971 eV Core-core repulsion = 20150.637360 eV Total energy + Delta-G solvation = -4001.317610 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.096 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.90118 -41.13588 -39.02228 -38.60347 -37.50477 -37.20940 -34.94510 -33.91654 -32.03705 -31.14454 -29.90704 -28.89017 -27.78559 -24.65041 -24.28640 -23.31213 -22.81406 -21.99622 -19.54342 -18.72151 -18.62800 -18.22730 -17.98004 -17.44057 -16.90911 -16.76368 -16.66298 -16.28454 -16.15101 -15.92339 -15.24891 -15.00261 -14.63446 -14.31568 -14.21721 -13.98582 -13.67654 -13.43943 -13.38403 -13.22328 -12.94187 -12.82656 -12.70760 -12.51925 -12.48878 -12.36227 -12.01533 -11.95514 -11.81188 -11.79473 -11.54775 -11.27930 -10.89395 -10.27001 -9.73811 -9.30489 -8.31964 -6.43854 0.05585 0.25606 0.82656 0.97528 1.19271 1.41421 1.43562 1.55600 2.34715 2.44484 2.54399 3.02145 3.04877 3.38989 3.66495 3.85985 3.89118 3.92601 3.96966 4.02405 4.09740 4.19208 4.36419 4.39762 4.50510 4.59747 4.64674 4.66233 4.69443 4.86308 5.16507 5.18066 5.19948 5.22983 5.27099 5.32708 5.50107 5.54766 5.95487 6.12770 6.49108 6.56349 6.79749 7.27612 8.79992 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.018106 B = 0.001951 C = 0.001816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.083368 B =14349.678159 C =15412.173266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.125 4.125 3 C -0.013 4.013 4 Cl -0.059 7.059 5 C -0.143 4.143 6 C -0.068 4.068 7 C -0.201 4.201 8 C 0.123 3.877 9 O -0.310 6.310 10 C 0.069 3.931 11 C 0.465 3.535 12 O -0.525 6.525 13 O -0.349 6.349 14 C 0.080 3.920 15 C 0.053 3.947 16 O -0.409 6.409 17 C 0.207 3.793 18 C -0.549 4.549 19 H 0.060 0.940 20 C 0.007 3.993 21 N -0.928 5.928 22 Si 0.982 3.018 23 H -0.270 1.270 24 H -0.274 1.274 25 H -0.264 1.264 26 H 0.075 0.925 27 H 0.062 0.938 28 H 0.077 0.923 29 H 0.155 0.845 30 H 0.168 0.832 31 H 0.160 0.840 32 H 0.141 0.859 33 H 0.132 0.868 34 H 0.072 0.928 35 H 0.111 0.889 36 H 0.083 0.917 37 H 0.060 0.940 38 H -0.008 1.008 39 H -0.008 1.008 40 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.701 26.742 -7.672 27.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.126 4.126 3 C -0.040 4.040 4 Cl -0.030 7.030 5 C -0.162 4.162 6 C -0.086 4.086 7 C -0.219 4.219 8 C 0.078 3.922 9 O -0.224 6.224 10 C -0.006 4.006 11 C 0.308 3.692 12 O -0.414 6.414 13 O -0.265 6.265 14 C 0.006 3.994 15 C -0.024 4.024 16 O -0.329 6.329 17 C 0.132 3.868 18 C -0.587 4.587 19 H 0.079 0.921 20 C -0.192 4.192 21 N -0.568 5.568 22 Si 0.805 3.195 23 H -0.195 1.195 24 H -0.199 1.199 25 H -0.189 1.189 26 H 0.093 0.907 27 H 0.081 0.919 28 H 0.096 0.904 29 H 0.172 0.828 30 H 0.185 0.815 31 H 0.177 0.823 32 H 0.159 0.841 33 H 0.149 0.851 34 H 0.091 0.909 35 H 0.129 0.871 36 H 0.101 0.899 37 H 0.079 0.921 38 H 0.009 0.991 39 H 0.010 0.990 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.286 26.808 -7.561 28.047 hybrid contribution 0.078 -0.681 0.371 0.779 sum -3.209 26.127 -7.191 27.287 Atomic orbital electron populations 1.20663 0.89685 1.03162 1.02990 1.19140 0.97525 0.89452 1.06480 1.20636 0.92859 0.86121 1.04381 1.98364 1.77157 1.30745 1.96749 1.21304 0.91221 1.00683 1.03005 1.21289 1.01774 0.90137 0.95406 1.21740 0.91865 1.01761 1.06549 1.18712 0.91117 0.84264 0.98147 1.86017 1.35419 1.11909 1.89089 1.22137 0.91223 0.78968 1.08297 1.23454 0.88301 0.85122 0.72341 1.90685 1.18016 1.86916 1.45767 1.86534 1.41843 1.14767 1.83359 1.23267 0.90298 0.81742 1.04046 1.22659 0.95956 0.95187 0.88549 1.87858 1.64241 1.42806 1.38010 1.19881 0.89104 0.81398 0.96375 1.21377 1.28670 1.05498 1.03105 0.92124 1.25934 0.97041 0.94349 1.01873 1.70055 1.39903 1.08933 1.37868 0.85204 0.77756 0.78698 0.77892 1.19479 1.19902 1.18860 0.90654 0.91883 0.90374 0.82774 0.81501 0.82268 0.84140 0.85085 0.90918 0.87084 0.89928 0.92140 0.99053 0.99021 0.92028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.11 9.39 71.24 0.67 -1.44 16 2 C -0.12 -2.47 5.90 -19.75 -0.12 -2.58 16 3 C -0.01 -0.22 6.31 22.31 0.14 -0.08 16 4 Cl -0.06 -0.93 27.29 -2.72 -0.07 -1.01 16 5 C -0.14 -1.88 9.83 22.31 0.22 -1.66 16 6 C -0.07 -0.77 10.04 22.25 0.22 -0.55 16 7 C -0.20 -2.80 9.04 22.37 0.20 -2.60 16 8 C 0.12 2.39 6.66 22.50 0.15 2.54 16 9 O -0.31 -7.04 8.71 -73.32 -0.64 -7.68 16 10 C 0.07 1.28 5.33 71.24 0.38 1.66 16 11 C 0.46 12.56 8.03 71.24 0.57 13.13 16 12 O -0.52 -17.35 16.25 28.38 0.46 -16.89 16 13 O -0.35 -10.39 10.19 -48.81 -0.50 -10.89 16 14 C 0.08 2.32 5.85 71.98 0.42 2.74 16 15 C 0.05 1.82 6.33 71.98 0.46 2.28 16 16 O -0.41 -19.31 10.30 -145.57 -1.50 -20.81 16 17 C 0.21 11.27 5.69 71.24 0.41 11.68 16 18 C -0.55 -32.06 9.43 25.60 0.24 -31.81 16 19 H 0.06 3.52 7.81 -2.91 -0.02 3.50 16 20 C 0.01 0.38 5.46 84.66 0.46 0.84 16 21 N -0.93 -54.55 13.29 21.45 0.28 -54.27 16 22 Si 0.98 43.48 29.54 68.60 2.03 45.51 16 23 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 24 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 25 H -0.26 -11.32 7.11 99.48 0.71 -10.62 16 26 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.06 1.40 7.53 -2.39 -0.02 1.38 16 28 H 0.08 1.35 6.90 -2.39 -0.02 1.33 16 29 H 0.15 1.35 8.06 -2.91 -0.02 1.33 16 30 H 0.17 0.86 8.06 -2.91 -0.02 0.84 16 31 H 0.16 1.47 6.30 -2.91 -0.02 1.45 16 32 H 0.14 1.68 7.66 -2.39 -0.02 1.66 16 33 H 0.13 1.91 7.66 -2.39 -0.02 1.89 16 34 H 0.07 2.22 8.13 -2.39 -0.02 2.20 16 35 H 0.11 2.57 8.13 -2.39 -0.02 2.55 16 36 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 37 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 38 H -0.01 -0.46 8.14 -2.38 -0.02 -0.48 16 39 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 40 H 0.27 14.75 8.31 -92.71 -0.77 13.98 16 Total: -1.00 -72.76 365.45 5.54 -67.22 By element: Atomic # 1 Polarization: 3.61 SS G_CDS: 1.06 Total: 4.67 kcal Atomic # 6 Polarization: -10.28 SS G_CDS: 4.43 Total: -5.85 kcal Atomic # 7 Polarization: -54.55 SS G_CDS: 0.28 Total: -54.27 kcal Atomic # 8 Polarization: -54.09 SS G_CDS: -2.17 Total: -56.27 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Atomic # 17 Polarization: -0.93 SS G_CDS: -0.07 Total: -1.01 kcal Total: -72.76 5.54 -67.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815211653.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.705 kcal (2) G-P(sol) polarization free energy of solvation -72.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds