Wall clock time and date at job start Tue Mar 31 2020 14:44:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 119.99813 * 2 1 4 4 H 1.48498 * 109.47185 * 270.00461 * 3 2 1 5 5 H 1.48502 * 109.47116 * 30.00477 * 3 2 1 6 6 H 1.48494 * 109.47129 * 150.00373 * 3 2 1 7 7 C 1.37873 * 119.99795 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99594 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00341 * 359.97438 * 7 2 1 10 10 O 1.42896 * 109.47450 * 180.02562 * 9 7 2 11 11 C 1.42892 * 114.00449 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47463 * 180.02562 * 11 10 9 13 13 O 1.45199 * 109.47160 * 64.99910 * 12 11 10 14 14 C 1.34234 * 117.00026 * 180.02562 * 13 12 11 15 15 O 1.20819 * 120.00078 * 359.97438 * 14 13 12 16 16 C 1.50698 * 119.99995 * 180.02562 * 14 13 12 17 17 C 1.52997 * 109.47095 * 179.97438 * 16 14 13 18 18 H 1.08995 * 109.46988 * 304.99095 * 17 16 14 19 19 O 1.42891 * 109.47533 * 64.99867 * 17 16 14 20 20 C 1.50706 * 109.46958 * 184.99779 * 17 16 14 21 21 C 1.38244 * 119.98773 * 99.99673 * 20 17 16 22 22 C 1.38217 * 120.01084 * 180.02562 * 21 20 17 23 23 C 1.38351 * 119.98541 * 0.25893 * 22 21 20 24 24 Cl 1.73604 * 120.00786 * 179.69323 * 23 22 21 25 25 C 1.38348 * 119.97455 * 359.46866 * 23 22 21 26 26 C 1.38212 * 119.98576 * 0.54994 * 25 23 22 27 27 H 0.96998 * 119.99974 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.46796 * 59.99950 * 9 7 2 29 29 H 1.09000 * 109.47163 * 299.99883 * 9 7 2 30 30 H 1.09004 * 109.47442 * 59.99593 * 11 10 9 31 31 H 1.09000 * 109.47324 * 300.00082 * 11 10 9 32 32 H 1.09000 * 109.47384 * 304.99661 * 12 11 10 33 33 H 1.09005 * 109.47516 * 185.00060 * 12 11 10 34 34 H 1.09004 * 109.47353 * 59.99162 * 16 14 13 35 35 H 1.09012 * 109.46807 * 299.99613 * 16 14 13 36 36 H 0.96699 * 114.00474 * 59.99269 * 19 17 16 37 37 H 1.07999 * 119.99331 * 0.02562 * 21 20 17 38 38 H 1.08002 * 120.00169 * 179.97438 * 22 21 20 39 39 H 1.08007 * 120.00586 * 180.25470 * 25 23 22 40 40 H 1.08000 * 119.99226 * 179.72624 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 8 2.1796 -3.5853 -0.0005 11 6 1.5651 -4.8754 -0.0011 12 6 2.6481 -5.9561 -0.0004 13 8 3.3984 -5.8887 1.2408 14 6 4.3931 -6.7758 1.4006 15 8 4.6286 -7.5822 0.5324 16 6 5.2152 -6.7666 2.6636 17 6 6.2729 -7.8697 2.5916 18 1 5.7878 -8.8259 2.3959 19 8 7.1941 -7.5786 1.5388 20 6 7.0140 -7.9413 3.9019 21 6 6.6832 -8.9103 4.8308 22 6 7.3622 -8.9761 6.0329 23 6 8.3694 -8.0686 6.3086 24 17 9.2172 -8.1457 7.8216 25 6 8.7038 -7.1027 5.3763 26 6 8.0239 -7.0377 4.1748 27 1 -0.4850 0.8400 0.0004 28 1 0.6241 -2.5566 -0.8903 29 1 0.6248 -2.5571 0.8897 30 1 0.9452 -4.9822 -0.8913 31 1 0.9447 -4.9827 0.8886 32 1 3.3222 -5.7956 -0.8417 33 1 2.1822 -6.9375 -0.0904 34 1 4.5657 -6.9417 3.5213 35 1 5.7057 -5.7989 2.7708 36 1 7.6633 -6.7401 1.6473 37 1 5.8940 -9.6160 4.6171 38 1 7.1033 -9.7329 6.7586 39 1 9.4928 -6.3966 5.5894 40 1 8.2819 -6.2809 3.4487 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815216983.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:56 Heat of formation + Delta-G solvation = -172.969023 kcal Electronic energy + Delta-G solvation = -24182.941411 eV Core-core repulsion = 20181.621923 eV Total energy + Delta-G solvation = -4001.319488 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.096 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.68777 -39.90194 -37.74796 -37.00088 -36.58325 -35.90608 -32.80776 -32.53473 -31.54327 -30.67456 -29.63639 -26.96241 -25.19990 -23.37615 -22.62968 -22.27007 -21.60826 -20.72875 -18.40860 -17.52630 -16.95123 -16.90636 -16.46413 -16.26657 -15.71960 -15.57104 -15.42857 -14.77736 -14.61696 -14.41863 -14.25487 -13.98156 -13.94338 -13.50049 -13.08804 -12.81659 -12.58449 -12.21807 -12.03549 -11.95874 -11.93913 -11.45896 -11.40833 -11.24975 -10.95418 -10.86601 -10.78365 -10.64670 -10.39161 -10.33659 -10.06379 -9.54975 -9.15574 -9.09694 -8.90000 -8.23804 -6.14232 -4.16034 0.57056 0.78430 1.67356 2.27494 2.68073 3.10621 3.28368 3.33394 3.38557 4.05807 4.12055 4.23587 4.30142 4.33594 4.41603 4.66858 4.72024 4.78522 4.89117 4.98516 5.14583 5.20142 5.22323 5.24207 5.36173 5.44856 5.47569 5.66709 5.72476 5.84669 5.91277 5.99180 6.07393 6.24939 6.60676 7.02981 7.26881 7.37272 7.75473 7.85264 8.10091 8.49895 8.96387 9.48758 10.97288 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.013061 B = 0.002072 C = 0.001873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2143.276010 B =13511.184977 C =14944.826085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.909 3.091 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.515 4.515 8 H 0.066 0.934 9 C 0.194 3.806 10 O -0.391 6.391 11 C 0.061 3.939 12 C 0.075 3.925 13 O -0.343 6.343 14 C 0.460 3.540 15 O -0.501 6.501 16 C -0.147 4.147 17 C 0.163 3.837 18 H 0.118 0.882 19 O -0.538 6.538 20 C -0.112 4.112 21 C -0.094 4.094 22 C -0.108 4.108 23 C -0.034 4.034 24 Cl -0.070 7.070 25 C -0.106 4.106 26 C -0.097 4.097 27 H 0.264 0.736 28 H 0.006 0.994 29 H 0.007 0.993 30 H 0.063 0.937 31 H 0.049 0.951 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.116 0.884 35 H 0.112 0.888 36 H 0.372 0.628 37 H 0.136 0.864 38 H 0.136 0.864 39 H 0.136 0.864 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.945 -19.364 12.626 27.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.736 3.264 4 H -0.204 1.204 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.553 4.553 8 H 0.085 0.915 9 C 0.120 3.880 10 O -0.311 6.311 11 C -0.016 4.016 12 C 0.002 3.998 13 O -0.259 6.259 14 C 0.302 3.698 15 O -0.389 6.389 16 C -0.185 4.185 17 C 0.104 3.896 18 H 0.136 0.864 19 O -0.343 6.343 20 C -0.113 4.113 21 C -0.112 4.112 22 C -0.127 4.127 23 C -0.060 4.060 24 Cl -0.042 7.042 25 C -0.124 4.124 26 C -0.115 4.115 27 H 0.074 0.926 28 H 0.024 0.976 29 H 0.025 0.975 30 H 0.081 0.919 31 H 0.068 0.932 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.134 0.866 35 H 0.131 0.869 36 H 0.220 0.780 37 H 0.154 0.846 38 H 0.153 0.847 39 H 0.154 0.846 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 14.883 -20.008 12.247 27.782 hybrid contribution 0.191 1.395 0.344 1.450 sum 15.075 -18.613 12.592 27.060 Atomic orbital electron populations 1.69961 1.06097 1.27214 1.50487 1.24958 0.95007 0.99476 0.95118 0.86319 0.79650 0.82171 0.78249 1.20449 1.21055 1.19613 1.21037 0.94074 0.89285 1.50898 0.91533 1.20241 0.88756 0.83500 0.95517 1.87910 1.35337 1.12619 1.95225 1.22324 0.93287 0.85481 1.00542 1.23204 0.93670 0.98710 0.84256 1.86592 1.43488 1.54284 1.41571 1.23310 0.79278 0.78445 0.88770 1.90691 1.67151 1.37943 1.43134 1.22170 0.98195 1.02676 0.95420 1.20590 0.87293 0.98599 0.83162 0.86384 1.86776 1.57514 1.43865 1.46098 1.20638 0.97537 0.96214 0.96901 1.21003 0.99498 0.98017 0.92680 1.21077 0.95137 0.98647 0.97815 1.21004 0.97148 0.99019 0.88854 1.98385 1.76817 1.97980 1.30977 1.21055 1.00484 0.97938 0.92963 1.20905 0.95403 0.98591 0.96577 0.92617 0.97592 0.97496 0.91948 0.93240 0.90470 0.90469 0.86580 0.86939 0.78033 0.84609 0.84650 0.84596 0.84867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.64 13.29 55.43 0.74 -25.90 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 3 Si 0.91 21.65 29.54 -169.99 -5.02 16.63 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.51 -15.07 9.43 -34.44 -0.32 -15.40 16 8 H 0.07 1.94 7.81 -52.49 -0.41 1.53 16 9 C 0.19 5.27 5.69 36.00 0.20 5.47 16 10 O -0.39 -9.39 10.30 -38.80 -0.40 -9.79 16 11 C 0.06 1.11 6.33 37.16 0.24 1.34 16 12 C 0.08 1.18 5.84 37.16 0.22 1.39 16 13 O -0.34 -5.50 10.19 -42.04 -0.43 -5.93 16 14 C 0.46 6.27 7.84 36.00 0.28 6.56 16 15 O -0.50 -8.00 15.17 -24.04 -0.36 -8.37 16 16 C -0.15 -1.33 5.47 -27.89 -0.15 -1.48 16 17 C 0.16 1.39 2.75 -27.88 -0.08 1.31 16 18 H 0.12 1.06 7.82 -51.93 -0.41 0.65 16 19 O -0.54 -5.46 12.42 -49.66 -0.62 -6.07 16 20 C -0.11 -0.82 4.97 -104.62 -0.52 -1.34 16 21 C -0.09 -0.62 9.67 -39.59 -0.38 -1.00 16 22 C -0.11 -0.74 9.83 -39.55 -0.39 -1.12 16 23 C -0.03 -0.25 6.32 -39.50 -0.25 -0.50 16 24 Cl -0.07 -0.53 28.96 -51.86 -1.50 -2.03 16 25 C -0.11 -0.74 9.83 -39.55 -0.39 -1.13 16 26 C -0.10 -0.65 9.32 -39.59 -0.37 -1.02 16 27 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 28 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 29 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.08 1.25 8.13 -51.93 -0.42 0.82 16 33 H 0.08 1.00 8.13 -51.93 -0.42 0.58 16 34 H 0.12 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.11 0.89 8.14 -51.92 -0.42 0.47 16 36 H 0.37 2.44 7.50 45.56 0.34 2.79 16 37 H 0.14 0.65 8.04 -52.49 -0.42 0.22 16 38 H 0.14 0.71 8.06 -52.49 -0.42 0.28 16 39 H 0.14 0.76 8.06 -52.48 -0.42 0.34 16 40 H 0.13 0.62 6.79 -52.49 -0.36 0.27 16 LS Contribution 367.44 15.07 5.54 5.54 Total: -1.00 -35.02 367.44 -8.68 -43.71 By element: Atomic # 1 Polarization: 2.25 SS G_CDS: -4.61 Total: -2.37 kcal Atomic # 6 Polarization: -3.40 SS G_CDS: -2.01 Total: -5.41 kcal Atomic # 7 Polarization: -26.64 SS G_CDS: 0.74 Total: -25.90 kcal Atomic # 8 Polarization: -28.35 SS G_CDS: -1.81 Total: -30.16 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Atomic # 17 Polarization: -0.53 SS G_CDS: -1.50 Total: -2.03 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -35.02 -8.68 -43.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815216983.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.264 kcal (2) G-P(sol) polarization free energy of solvation -35.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds