Wall clock time and date at job start Tue Mar 31 2020 14:44:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 119.99813 * 2 1 4 4 H 1.48498 * 109.47185 * 270.00461 * 3 2 1 5 5 H 1.48502 * 109.47116 * 30.00477 * 3 2 1 6 6 H 1.48494 * 109.47129 * 150.00373 * 3 2 1 7 7 C 1.37873 * 119.99795 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99594 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00341 * 359.97438 * 7 2 1 10 10 O 1.42896 * 109.47450 * 180.02562 * 9 7 2 11 11 C 1.42892 * 114.00449 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47463 * 180.02562 * 11 10 9 13 13 O 1.45199 * 109.47160 * 64.99910 * 12 11 10 14 14 C 1.34234 * 117.00026 * 180.02562 * 13 12 11 15 15 O 1.20819 * 120.00078 * 359.97438 * 14 13 12 16 16 C 1.50698 * 119.99995 * 180.02562 * 14 13 12 17 17 C 1.52997 * 109.47095 * 179.97438 * 16 14 13 18 18 H 1.08995 * 109.46988 * 304.99095 * 17 16 14 19 19 O 1.42891 * 109.47533 * 64.99867 * 17 16 14 20 20 C 1.50706 * 109.46958 * 184.99779 * 17 16 14 21 21 C 1.38244 * 119.98773 * 99.99673 * 20 17 16 22 22 C 1.38217 * 120.01084 * 180.02562 * 21 20 17 23 23 C 1.38351 * 119.98541 * 0.25893 * 22 21 20 24 24 Cl 1.73604 * 120.00786 * 179.69323 * 23 22 21 25 25 C 1.38348 * 119.97455 * 359.46866 * 23 22 21 26 26 C 1.38212 * 119.98576 * 0.54994 * 25 23 22 27 27 H 0.96998 * 119.99974 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.46796 * 59.99950 * 9 7 2 29 29 H 1.09000 * 109.47163 * 299.99883 * 9 7 2 30 30 H 1.09004 * 109.47442 * 59.99593 * 11 10 9 31 31 H 1.09000 * 109.47324 * 300.00082 * 11 10 9 32 32 H 1.09000 * 109.47384 * 304.99661 * 12 11 10 33 33 H 1.09005 * 109.47516 * 185.00060 * 12 11 10 34 34 H 1.09004 * 109.47353 * 59.99162 * 16 14 13 35 35 H 1.09012 * 109.46807 * 299.99613 * 16 14 13 36 36 H 0.96699 * 114.00474 * 59.99269 * 19 17 16 37 37 H 1.07999 * 119.99331 * 0.02562 * 21 20 17 38 38 H 1.08002 * 120.00169 * 179.97438 * 22 21 20 39 39 H 1.08007 * 120.00586 * 180.25470 * 25 23 22 40 40 H 1.08000 * 119.99226 * 179.72624 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 8 2.1796 -3.5853 -0.0005 11 6 1.5651 -4.8754 -0.0011 12 6 2.6481 -5.9561 -0.0004 13 8 3.3984 -5.8887 1.2408 14 6 4.3931 -6.7758 1.4006 15 8 4.6286 -7.5822 0.5324 16 6 5.2152 -6.7666 2.6636 17 6 6.2729 -7.8697 2.5916 18 1 5.7878 -8.8259 2.3959 19 8 7.1941 -7.5786 1.5388 20 6 7.0140 -7.9413 3.9019 21 6 6.6832 -8.9103 4.8308 22 6 7.3622 -8.9761 6.0329 23 6 8.3694 -8.0686 6.3086 24 17 9.2172 -8.1457 7.8216 25 6 8.7038 -7.1027 5.3763 26 6 8.0239 -7.0377 4.1748 27 1 -0.4850 0.8400 0.0004 28 1 0.6241 -2.5566 -0.8903 29 1 0.6248 -2.5571 0.8897 30 1 0.9452 -4.9822 -0.8913 31 1 0.9447 -4.9827 0.8886 32 1 3.3222 -5.7956 -0.8417 33 1 2.1822 -6.9375 -0.0904 34 1 4.5657 -6.9417 3.5213 35 1 5.7057 -5.7989 2.7708 36 1 7.6633 -6.7401 1.6473 37 1 5.8940 -9.6160 4.6171 38 1 7.1033 -9.7329 6.7586 39 1 9.4928 -6.3966 5.5894 40 1 8.2819 -6.2809 3.4487 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815216983.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:55 Heat of formation + Delta-G solvation = -194.963095 kcal Electronic energy + Delta-G solvation = -24183.895146 eV Core-core repulsion = 20181.621923 eV Total energy + Delta-G solvation = -4002.273222 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.096 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.65450 -40.60951 -38.84124 -38.23763 -37.38673 -37.02950 -34.94508 -33.24902 -32.05053 -31.83232 -30.65927 -28.99212 -25.96990 -24.56633 -23.89622 -23.66410 -22.41408 -21.66533 -19.16346 -18.70156 -18.45019 -18.02839 -17.64961 -17.32573 -16.93070 -16.68670 -16.40208 -16.22867 -15.98271 -15.35250 -15.14736 -15.08911 -14.47389 -14.45904 -14.29970 -14.07418 -13.71266 -13.34605 -13.22024 -12.99792 -12.87289 -12.69858 -12.64820 -12.48884 -12.43777 -12.05104 -11.98692 -11.77621 -11.69676 -11.53642 -11.28338 -11.23659 -10.89239 -10.27333 -10.03913 -9.64449 -8.32243 -6.44415 0.03265 0.29546 1.13522 1.21603 1.41074 1.43606 1.55656 1.67560 2.34685 2.56619 3.01727 3.06510 3.41710 3.45459 3.61341 3.75621 3.92147 3.94151 4.00519 4.11504 4.13370 4.32151 4.36941 4.43085 4.52313 4.57867 4.66017 4.70257 4.79357 4.85669 4.97460 5.15816 5.17442 5.22976 5.45800 5.49829 5.54439 5.76193 5.95009 6.49721 6.72506 6.75414 6.79976 7.27130 8.79869 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.013061 B = 0.002072 C = 0.001873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2143.276010 B =13511.184977 C =14944.826085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.006 3.994 3 Si 0.983 3.017 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.264 1.264 7 C -0.549 4.549 8 H 0.061 0.939 9 C 0.207 3.793 10 O -0.408 6.408 11 C 0.053 3.947 12 C 0.079 3.921 13 O -0.362 6.362 14 C 0.459 3.541 15 O -0.527 6.527 16 C -0.140 4.140 17 C 0.171 3.829 18 H 0.111 0.889 19 O -0.561 6.561 20 C -0.116 4.116 21 C -0.096 4.096 22 C -0.114 4.114 23 C -0.046 4.046 24 Cl -0.075 7.075 25 C -0.114 4.114 26 C -0.100 4.100 27 H 0.271 0.729 28 H -0.009 1.009 29 H -0.010 1.010 30 H 0.080 0.920 31 H 0.057 0.943 32 H 0.068 0.932 33 H 0.107 0.893 34 H 0.138 0.862 35 H 0.127 0.873 36 H 0.385 0.615 37 H 0.153 0.847 38 H 0.148 0.852 39 H 0.146 0.854 40 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.787 -19.098 13.246 28.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.193 4.193 3 Si 0.806 3.194 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.188 1.188 7 C -0.586 4.586 8 H 0.079 0.921 9 C 0.132 3.868 10 O -0.329 6.329 11 C -0.024 4.024 12 C 0.006 3.994 13 O -0.279 6.279 14 C 0.303 3.697 15 O -0.417 6.417 16 C -0.177 4.177 17 C 0.112 3.888 18 H 0.129 0.871 19 O -0.368 6.368 20 C -0.117 4.117 21 C -0.114 4.114 22 C -0.133 4.133 23 C -0.072 4.072 24 Cl -0.046 7.046 25 C -0.133 4.133 26 C -0.118 4.118 27 H 0.080 0.920 28 H 0.009 0.991 29 H 0.008 0.992 30 H 0.098 0.902 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.125 0.875 34 H 0.156 0.844 35 H 0.145 0.855 36 H 0.235 0.765 37 H 0.171 0.829 38 H 0.166 0.834 39 H 0.164 0.836 40 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 15.731 -19.762 12.875 28.351 hybrid contribution -0.085 1.209 0.153 1.222 sum 15.646 -18.553 13.029 27.546 Atomic orbital electron populations 1.70061 1.07684 1.28678 1.50416 1.25958 0.96001 1.03369 0.93935 0.85183 0.78410 0.77021 0.78810 1.19372 1.19904 1.18812 1.21373 0.94089 0.90857 1.52327 0.92106 1.19878 0.88589 0.84419 0.93881 1.87854 1.35509 1.14182 1.95323 1.22649 0.94581 0.83390 1.01754 1.23131 0.93104 0.98986 0.84213 1.86593 1.44398 1.55394 1.41496 1.24151 0.78550 0.77253 0.89767 1.90677 1.67701 1.38854 1.44431 1.22313 0.98023 1.03735 0.93625 1.20489 0.86946 0.97979 0.83417 0.87077 1.86737 1.58000 1.45021 1.47055 1.20544 0.97889 0.96892 0.96374 1.21237 0.99756 0.98070 0.92360 1.21276 0.94940 0.98845 0.98227 1.21204 0.97541 0.99568 0.88897 1.98381 1.76948 1.98011 1.31290 1.21245 1.00895 0.98146 0.93016 1.21141 0.94988 0.98827 0.96808 0.92014 0.99082 0.99224 0.90229 0.92508 0.91311 0.87473 0.84375 0.85514 0.76493 0.82918 0.83378 0.83579 0.83096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.18 13.29 21.45 0.28 -54.90 16 2 C 0.01 0.34 5.46 84.65 0.46 0.80 16 3 Si 0.98 43.83 29.54 68.60 2.03 45.86 16 4 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 5 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 6 H -0.26 -11.36 7.11 99.48 0.71 -10.66 16 7 C -0.55 -32.48 9.43 25.60 0.24 -32.24 16 8 H 0.06 3.57 7.81 -2.91 -0.02 3.55 16 9 C 0.21 11.50 5.69 71.24 0.41 11.91 16 10 O -0.41 -19.85 10.30 -145.57 -1.50 -21.35 16 11 C 0.05 1.90 6.33 71.98 0.46 2.35 16 12 C 0.08 2.41 5.84 71.98 0.42 2.83 16 13 O -0.36 -11.30 10.19 -48.81 -0.50 -11.80 16 14 C 0.46 12.04 7.84 71.24 0.56 12.59 16 15 O -0.53 -16.46 15.17 27.05 0.41 -16.05 16 16 C -0.14 -2.28 5.47 29.85 0.16 -2.12 16 17 C 0.17 2.66 2.75 29.85 0.08 2.75 16 18 H 0.11 1.87 7.82 -2.39 -0.02 1.85 16 19 O -0.56 -10.75 12.42 -135.18 -1.68 -12.43 16 20 C -0.12 -1.49 4.97 -19.86 -0.10 -1.59 16 21 C -0.10 -1.11 9.67 22.27 0.22 -0.89 16 22 C -0.11 -1.39 9.83 22.29 0.22 -1.17 16 23 C -0.05 -0.63 6.32 22.32 0.14 -0.49 16 24 Cl -0.08 -1.06 28.96 -2.72 -0.08 -1.14 16 25 C -0.11 -1.44 9.83 22.29 0.22 -1.22 16 26 C -0.10 -1.16 9.32 22.26 0.21 -0.95 16 27 H 0.27 14.90 8.31 -92.71 -0.77 14.13 16 28 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 29 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 30 H 0.08 2.56 8.14 -2.38 -0.02 2.54 16 31 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.07 2.20 8.13 -2.39 -0.02 2.18 16 33 H 0.11 2.62 8.13 -2.38 -0.02 2.60 16 34 H 0.14 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.13 1.74 8.14 -2.38 -0.02 1.73 16 36 H 0.39 4.54 7.50 -74.06 -0.56 3.99 16 37 H 0.15 1.15 8.04 -2.91 -0.02 1.12 16 38 H 0.15 1.32 8.06 -2.91 -0.02 1.30 16 39 H 0.15 1.44 8.06 -2.91 -0.02 1.42 16 40 H 0.15 1.10 6.79 -2.91 -0.02 1.08 16 Total: -1.00 -74.87 367.44 3.17 -71.70 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: 0.51 Total: 7.54 kcal Atomic # 6 Polarization: -11.13 SS G_CDS: 3.69 Total: -7.44 kcal Atomic # 7 Polarization: -55.18 SS G_CDS: 0.28 Total: -54.90 kcal Atomic # 8 Polarization: -58.36 SS G_CDS: -3.27 Total: -61.63 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Atomic # 17 Polarization: -1.06 SS G_CDS: -0.08 Total: -1.14 kcal Total: -74.87 3.17 -71.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815216983.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.261 kcal (2) G-P(sol) polarization free energy of solvation -74.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds