Wall clock time and date at job start Tue Mar 31 2020 14:43:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 120.00275 * 2 1 4 4 H 1.48503 * 109.47086 * 270.00340 * 3 2 1 5 5 H 1.48500 * 109.46813 * 29.99897 * 3 2 1 6 6 H 1.48493 * 109.47416 * 150.00008 * 3 2 1 7 7 C 1.37882 * 119.99955 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99667 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00219 * 359.97438 * 7 2 1 10 10 O 1.42891 * 109.47377 * 180.02562 * 9 7 2 11 11 C 1.42895 * 114.00234 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.47708 * 180.02562 * 11 10 9 13 13 O 1.45193 * 109.47137 * 64.99646 * 12 11 10 14 14 C 1.34228 * 117.00224 * 180.02562 * 13 12 11 15 15 O 1.20825 * 119.99932 * 0.02562 * 14 13 12 16 16 C 1.50698 * 120.00059 * 180.02562 * 14 13 12 17 17 H 1.08994 * 109.47424 * 305.00192 * 16 14 13 18 18 O 1.42907 * 109.46859 * 185.00237 * 16 14 13 19 19 C 1.52996 * 109.46976 * 65.00542 * 16 14 13 20 20 C 1.50704 * 109.47060 * 184.99729 * 19 16 14 21 21 C 1.38233 * 120.00780 * 265.01862 * 20 19 16 22 22 C 1.38222 * 120.01513 * 180.02562 * 21 20 19 23 23 C 1.38259 * 120.02347 * 359.70299 * 22 21 20 24 24 C 1.38190 * 120.01585 * 0.55551 * 23 22 21 25 25 C 1.38326 * 120.00482 * 85.00060 * 20 19 16 26 26 Cl 1.73597 * 120.01847 * 359.97438 * 25 20 19 27 27 H 0.97004 * 120.00281 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.46918 * 60.00156 * 9 7 2 29 29 H 1.09004 * 109.46866 * 300.00494 * 9 7 2 30 30 H 1.08997 * 109.46987 * 60.00207 * 11 10 9 31 31 H 1.09003 * 109.47430 * 300.00151 * 11 10 9 32 32 H 1.09005 * 109.46444 * 305.00345 * 12 11 10 33 33 H 1.08997 * 109.47480 * 185.00586 * 12 11 10 34 34 H 0.96703 * 114.00045 * 299.99893 * 18 16 14 35 35 H 1.09002 * 109.47578 * 64.99707 * 19 16 14 36 36 H 1.08993 * 109.47373 * 304.99662 * 19 16 14 37 37 H 1.08002 * 119.99253 * 359.97438 * 21 20 19 38 38 H 1.08003 * 119.98735 * 179.97438 * 22 21 20 39 39 H 1.08004 * 119.99442 * 180.29764 * 23 22 21 40 40 H 1.08002 * 120.01169 * 179.75023 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 8 2.1796 -3.5853 -0.0005 11 6 1.5651 -4.8754 0.0000 12 6 2.6480 -5.9563 0.0006 13 8 3.3992 -5.8881 1.2413 14 6 4.3939 -6.7751 1.4010 15 8 4.6293 -7.5816 0.5326 16 6 5.2169 -6.7652 2.6633 17 1 5.6356 -5.7705 2.8162 18 8 6.2775 -7.7159 2.5479 19 6 4.3292 -7.1334 3.8537 20 6 5.1209 -7.0043 5.1296 21 6 5.7427 -8.1131 5.6725 22 6 6.4684 -7.9950 6.8429 23 6 6.5779 -6.7667 7.4681 24 6 5.9522 -5.6586 6.9293 25 6 5.2256 -5.7762 5.7574 26 17 4.4459 -4.3830 5.0758 27 1 -0.4851 0.8401 0.0004 28 1 0.6241 -2.5568 -0.8903 29 1 0.6246 -2.5571 0.8897 30 1 0.9447 -4.9827 -0.8897 31 1 0.9452 -4.9822 0.8903 32 1 3.3216 -5.7960 -0.8412 33 1 2.1820 -6.9376 -0.0886 34 1 5.9776 -8.6249 2.4099 35 1 3.9819 -8.1607 3.7440 36 1 3.4715 -6.4618 3.8889 37 1 5.6609 -9.0720 5.1824 38 1 6.9538 -8.8617 7.2669 39 1 7.1490 -6.6740 8.3800 40 1 6.0344 -4.7000 7.4199 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815236317.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:00 Heat of formation + Delta-G solvation = -173.515100 kcal Electronic energy + Delta-G solvation = -24999.796220 eV Core-core repulsion = 20998.453052 eV Total energy + Delta-G solvation = -4001.343168 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.096 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.74841 -39.70027 -37.69152 -36.75011 -36.55221 -35.95965 -33.34162 -32.77738 -31.04008 -30.46377 -29.17782 -26.95461 -25.30941 -23.01545 -22.60729 -22.23892 -21.64857 -21.04023 -18.33656 -17.54767 -17.16709 -16.62451 -16.44879 -16.13856 -15.85084 -15.57077 -15.30629 -14.98470 -14.47623 -14.34471 -14.10577 -13.93634 -13.53679 -13.46013 -13.01279 -12.68628 -12.43489 -12.13753 -11.99411 -11.88500 -11.66783 -11.52895 -11.45452 -11.25017 -10.95909 -10.86113 -10.85132 -10.76685 -10.44354 -10.20306 -10.03799 -9.19390 -9.14194 -8.91144 -8.88653 -8.22861 -6.12902 -4.14508 0.83529 0.94975 2.01339 2.08506 2.60108 3.29880 3.31389 3.34873 3.40659 3.87452 4.28603 4.31534 4.40349 4.49327 4.64441 4.68334 4.75890 4.77343 4.98004 5.06980 5.16615 5.23852 5.28492 5.38886 5.42775 5.49190 5.64032 5.82311 5.88557 5.91746 6.03691 6.04654 6.10199 6.47181 6.48516 7.03382 7.12372 7.38123 7.70374 7.77387 8.11251 8.50702 8.98055 9.50352 10.98659 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.012357 B = 0.003110 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2265.363063 B = 9002.053211 C =10683.895927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.057 3.943 3 Si 0.908 3.092 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.515 4.515 8 H 0.067 0.933 9 C 0.195 3.805 10 O -0.390 6.390 11 C 0.062 3.938 12 C 0.073 3.927 13 O -0.334 6.334 14 C 0.433 3.567 15 O -0.509 6.509 16 C 0.127 3.873 17 H 0.140 0.860 18 O -0.526 6.526 19 C -0.114 4.114 20 C -0.069 4.069 21 C -0.093 4.093 22 C -0.117 4.117 23 C -0.110 4.110 24 C -0.110 4.110 25 C -0.036 4.036 26 Cl -0.048 7.048 27 H 0.264 0.736 28 H 0.006 0.994 29 H 0.007 0.993 30 H 0.063 0.937 31 H 0.050 0.950 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.381 0.619 35 H 0.087 0.913 36 H 0.107 0.893 37 H 0.130 0.870 38 H 0.127 0.873 39 H 0.130 0.870 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.091 -18.872 14.255 25.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.735 3.265 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.553 4.553 8 H 0.085 0.915 9 C 0.121 3.879 10 O -0.310 6.310 11 C -0.016 4.016 12 C -0.001 4.001 13 O -0.250 6.250 14 C 0.275 3.725 15 O -0.397 6.397 16 C 0.066 3.934 17 H 0.157 0.843 18 O -0.331 6.331 19 C -0.151 4.151 20 C -0.069 4.069 21 C -0.112 4.112 22 C -0.135 4.135 23 C -0.128 4.128 24 C -0.128 4.128 25 C -0.063 4.063 26 Cl -0.019 7.019 27 H 0.074 0.926 28 H 0.024 0.976 29 H 0.025 0.975 30 H 0.081 0.919 31 H 0.068 0.932 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.230 0.770 35 H 0.106 0.894 36 H 0.125 0.875 37 H 0.148 0.852 38 H 0.145 0.855 39 H 0.148 0.852 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 10.459 -18.278 13.988 25.281 hybrid contribution -0.455 0.483 -0.341 0.746 sum 10.004 -17.795 13.646 24.555 Atomic orbital electron populations 1.69956 1.06104 1.27209 1.50531 1.24943 0.94980 0.99440 0.95089 0.86338 0.79722 0.82205 0.78271 1.20433 1.21037 1.19563 1.21046 0.94107 0.89281 1.50872 0.91509 1.20232 0.88722 0.83484 0.95475 1.87920 1.35299 1.12569 1.95217 1.22316 0.93179 0.85513 1.00592 1.23264 0.93723 0.98853 0.84240 1.86617 1.42976 1.53802 1.41565 1.24611 0.79552 0.78512 0.89787 1.90659 1.67379 1.38416 1.43293 1.21449 0.87609 0.96593 0.87751 0.84260 1.86698 1.31432 1.20474 1.94540 1.21312 0.98531 1.04570 0.90709 1.19424 0.99199 0.92078 0.96240 1.20978 0.96633 0.97866 0.95684 1.21220 0.98862 0.97839 0.95599 1.21133 0.99255 0.92298 1.00164 1.21096 0.97138 0.99998 0.94597 1.21014 0.99876 0.89043 0.96355 1.98456 1.79021 1.40205 1.84207 0.92623 0.97628 0.97515 0.91906 0.93164 0.90393 0.90381 0.77003 0.89416 0.87455 0.85228 0.85455 0.85220 0.84803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.88 13.29 55.43 0.74 -26.14 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 3 Si 0.91 21.97 29.54 -169.99 -5.02 16.95 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.51 -15.25 9.43 -34.44 -0.32 -15.58 16 8 H 0.07 1.98 7.81 -52.49 -0.41 1.57 16 9 C 0.19 5.34 5.69 36.01 0.20 5.54 16 10 O -0.39 -9.44 10.30 -38.80 -0.40 -9.84 16 11 C 0.06 1.11 6.33 37.16 0.24 1.35 16 12 C 0.07 1.14 5.84 37.16 0.22 1.35 16 13 O -0.33 -5.41 10.16 -42.02 -0.43 -5.84 16 14 C 0.43 6.23 7.27 36.00 0.26 6.49 16 15 O -0.51 -8.17 16.07 -25.46 -0.41 -8.58 16 16 C 0.13 1.46 3.48 -27.89 -0.10 1.37 16 17 H 0.14 1.74 7.95 -51.93 -0.41 1.33 16 18 O -0.53 -5.66 12.69 -55.14 -0.70 -6.36 16 19 C -0.11 -1.08 4.52 -27.88 -0.13 -1.21 16 20 C -0.07 -0.65 4.92 -104.59 -0.51 -1.17 16 21 C -0.09 -0.72 9.62 -39.59 -0.38 -1.11 16 22 C -0.12 -0.82 10.05 -39.58 -0.40 -1.22 16 23 C -0.11 -0.81 10.04 -39.59 -0.40 -1.21 16 24 C -0.11 -0.98 9.83 -39.55 -0.39 -1.37 16 25 C -0.04 -0.38 6.31 -39.50 -0.25 -0.63 16 26 Cl -0.05 -0.60 27.21 -51.86 -1.41 -2.02 16 27 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 28 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16 29 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 31 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.08 1.26 8.13 -51.93 -0.42 0.84 16 33 H 0.08 1.00 8.13 -51.93 -0.42 0.57 16 34 H 0.38 2.86 8.79 45.56 0.40 3.26 16 35 H 0.09 0.64 8.05 -51.93 -0.42 0.22 16 36 H 0.11 1.14 7.10 -51.93 -0.37 0.77 16 37 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 38 H 0.13 0.59 8.06 -52.48 -0.42 0.17 16 39 H 0.13 0.64 8.06 -52.48 -0.42 0.22 16 40 H 0.13 1.03 8.06 -52.49 -0.42 0.60 16 LS Contribution 368.44 15.07 5.55 5.55 Total: -1.00 -34.53 368.44 -8.70 -43.23 By element: Atomic # 1 Polarization: 3.44 SS G_CDS: -4.57 Total: -1.13 kcal Atomic # 6 Polarization: -3.78 SS G_CDS: -2.05 Total: -5.84 kcal Atomic # 7 Polarization: -26.88 SS G_CDS: 0.74 Total: -26.14 kcal Atomic # 8 Polarization: -28.68 SS G_CDS: -1.94 Total: -30.61 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Atomic # 17 Polarization: -0.60 SS G_CDS: -1.41 Total: -2.02 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.53 -8.70 -43.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815236317.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.285 kcal (2) G-P(sol) polarization free energy of solvation -34.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds