Wall clock time and date at job start Tue Mar 31 2020 14:43:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 120.00275 * 2 1 4 4 H 1.48503 * 109.47086 * 270.00340 * 3 2 1 5 5 H 1.48500 * 109.46813 * 29.99897 * 3 2 1 6 6 H 1.48493 * 109.47416 * 150.00008 * 3 2 1 7 7 C 1.37882 * 119.99955 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99667 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00219 * 359.97438 * 7 2 1 10 10 O 1.42891 * 109.47377 * 180.02562 * 9 7 2 11 11 C 1.42895 * 114.00234 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.47708 * 180.02562 * 11 10 9 13 13 O 1.45193 * 109.47137 * 64.99646 * 12 11 10 14 14 C 1.34228 * 117.00224 * 180.02562 * 13 12 11 15 15 O 1.20825 * 119.99932 * 0.02562 * 14 13 12 16 16 C 1.50698 * 120.00059 * 180.02562 * 14 13 12 17 17 H 1.08994 * 109.47424 * 305.00192 * 16 14 13 18 18 O 1.42907 * 109.46859 * 185.00237 * 16 14 13 19 19 C 1.52996 * 109.46976 * 65.00542 * 16 14 13 20 20 C 1.50704 * 109.47060 * 184.99729 * 19 16 14 21 21 C 1.38233 * 120.00780 * 265.01862 * 20 19 16 22 22 C 1.38222 * 120.01513 * 180.02562 * 21 20 19 23 23 C 1.38259 * 120.02347 * 359.70299 * 22 21 20 24 24 C 1.38190 * 120.01585 * 0.55551 * 23 22 21 25 25 C 1.38326 * 120.00482 * 85.00060 * 20 19 16 26 26 Cl 1.73597 * 120.01847 * 359.97438 * 25 20 19 27 27 H 0.97004 * 120.00281 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.46918 * 60.00156 * 9 7 2 29 29 H 1.09004 * 109.46866 * 300.00494 * 9 7 2 30 30 H 1.08997 * 109.46987 * 60.00207 * 11 10 9 31 31 H 1.09003 * 109.47430 * 300.00151 * 11 10 9 32 32 H 1.09005 * 109.46444 * 305.00345 * 12 11 10 33 33 H 1.08997 * 109.47480 * 185.00586 * 12 11 10 34 34 H 0.96703 * 114.00045 * 299.99893 * 18 16 14 35 35 H 1.09002 * 109.47578 * 64.99707 * 19 16 14 36 36 H 1.08993 * 109.47373 * 304.99662 * 19 16 14 37 37 H 1.08002 * 119.99253 * 359.97438 * 21 20 19 38 38 H 1.08003 * 119.98735 * 179.97438 * 22 21 20 39 39 H 1.08004 * 119.99442 * 180.29764 * 23 22 21 40 40 H 1.08002 * 120.01169 * 179.75023 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 8 2.1796 -3.5853 -0.0005 11 6 1.5651 -4.8754 0.0000 12 6 2.6480 -5.9563 0.0006 13 8 3.3992 -5.8881 1.2413 14 6 4.3939 -6.7751 1.4010 15 8 4.6293 -7.5816 0.5326 16 6 5.2169 -6.7652 2.6633 17 1 5.6356 -5.7705 2.8162 18 8 6.2775 -7.7159 2.5479 19 6 4.3292 -7.1334 3.8537 20 6 5.1209 -7.0043 5.1296 21 6 5.7427 -8.1131 5.6725 22 6 6.4684 -7.9950 6.8429 23 6 6.5779 -6.7667 7.4681 24 6 5.9522 -5.6586 6.9293 25 6 5.2256 -5.7762 5.7574 26 17 4.4459 -4.3830 5.0758 27 1 -0.4851 0.8401 0.0004 28 1 0.6241 -2.5568 -0.8903 29 1 0.6246 -2.5571 0.8897 30 1 0.9447 -4.9827 -0.8897 31 1 0.9452 -4.9822 0.8903 32 1 3.3216 -5.7960 -0.8412 33 1 2.1820 -6.9376 -0.0886 34 1 5.9776 -8.6249 2.4099 35 1 3.9819 -8.1607 3.7440 36 1 3.4715 -6.4618 3.8889 37 1 5.6609 -9.0720 5.1824 38 1 6.9538 -8.8617 7.2669 39 1 7.1490 -6.6740 8.3800 40 1 6.0344 -4.7000 7.4199 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815236317.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:00 Heat of formation + Delta-G solvation = -195.308264 kcal Electronic energy + Delta-G solvation = -25000.741242 eV Core-core repulsion = 20998.453052 eV Total energy + Delta-G solvation = -4002.288190 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.096 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.86131 -40.41859 -38.96457 -38.18399 -37.37843 -37.21553 -34.97389 -34.05983 -31.89925 -31.61725 -30.16015 -28.99232 -26.20766 -24.59004 -23.74254 -23.62977 -22.41747 -22.10186 -19.40246 -18.78022 -18.45826 -18.02968 -17.79352 -17.17387 -17.00358 -16.72993 -16.42934 -16.23053 -16.08554 -15.62080 -15.36974 -14.73341 -14.59974 -14.35991 -14.17568 -14.03284 -13.71384 -13.40059 -13.17698 -12.98200 -12.94205 -12.73324 -12.61082 -12.50167 -12.42492 -12.19564 -12.12379 -11.99406 -11.78968 -11.68072 -11.31351 -11.21305 -10.90988 -10.29210 -9.82257 -9.60038 -8.34623 -6.46568 0.18407 0.33470 0.94746 1.23986 1.38157 1.40646 1.49889 1.52789 2.32420 2.68537 2.99351 3.02380 3.06360 3.43206 3.66949 3.72457 3.83771 3.89221 4.00830 4.07661 4.18119 4.37234 4.40058 4.44988 4.48269 4.61269 4.63765 4.68070 4.82957 4.84716 5.03630 5.15261 5.28492 5.32245 5.44087 5.51724 5.52108 5.91812 5.92993 6.37292 6.48029 6.61183 6.77505 7.25012 8.77585 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.012357 B = 0.003110 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2265.363063 B = 9002.053211 C =10683.895927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.009 3.991 3 Si 0.980 3.020 4 H -0.267 1.267 5 H -0.272 1.272 6 H -0.267 1.267 7 C -0.551 4.551 8 H 0.058 0.942 9 C 0.210 3.790 10 O -0.409 6.409 11 C 0.053 3.947 12 C 0.076 3.924 13 O -0.352 6.352 14 C 0.435 3.565 15 O -0.526 6.526 16 C 0.138 3.862 17 H 0.126 0.874 18 O -0.530 6.530 19 C -0.106 4.106 20 C -0.082 4.082 21 C -0.095 4.095 22 C -0.115 4.115 23 C -0.109 4.109 24 C -0.123 4.123 25 C -0.056 4.056 26 Cl -0.081 7.081 27 H 0.272 0.728 28 H -0.007 1.007 29 H -0.011 1.011 30 H 0.083 0.917 31 H 0.057 0.943 32 H 0.070 0.930 33 H 0.113 0.887 34 H 0.397 0.603 35 H 0.113 0.887 36 H 0.091 0.909 37 H 0.155 0.845 38 H 0.157 0.843 39 H 0.156 0.844 40 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.341 -20.149 15.253 27.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.190 4.190 3 Si 0.802 3.198 4 H -0.192 1.192 5 H -0.197 1.197 6 H -0.191 1.191 7 C -0.588 4.588 8 H 0.076 0.924 9 C 0.135 3.865 10 O -0.330 6.330 11 C -0.024 4.024 12 C 0.003 3.997 13 O -0.268 6.268 14 C 0.279 3.721 15 O -0.416 6.416 16 C 0.077 3.923 17 H 0.144 0.856 18 O -0.338 6.338 19 C -0.143 4.143 20 C -0.082 4.082 21 C -0.113 4.113 22 C -0.133 4.133 23 C -0.127 4.127 24 C -0.142 4.142 25 C -0.082 4.082 26 Cl -0.052 7.052 27 H 0.080 0.920 28 H 0.010 0.990 29 H 0.007 0.993 30 H 0.100 0.900 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.131 0.869 34 H 0.248 0.752 35 H 0.131 0.869 36 H 0.110 0.890 37 H 0.172 0.828 38 H 0.175 0.825 39 H 0.173 0.827 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 11.706 -19.591 14.987 27.303 hybrid contribution -0.812 0.720 -0.601 1.240 sum 10.894 -18.871 14.386 26.111 Atomic orbital electron populations 1.70050 1.07617 1.28695 1.50373 1.25911 0.95969 1.03220 0.93877 0.85234 0.78380 0.77225 0.78919 1.19158 1.19699 1.19139 1.21377 0.94017 0.91006 1.52426 0.92354 1.19847 0.88504 0.84331 0.93842 1.87864 1.35546 1.14236 1.95326 1.22657 0.94504 0.83333 1.01891 1.23246 0.93126 0.99384 0.83971 1.86621 1.43753 1.54704 1.41694 1.25192 0.78941 0.77607 0.90385 1.90641 1.67786 1.39042 1.44109 1.21347 0.87473 0.96420 0.87081 0.85646 1.86675 1.31225 1.21451 1.94427 1.21236 0.97554 1.05607 0.89925 1.19508 1.00027 0.92364 0.96349 1.21318 0.95844 0.98149 0.95949 1.21633 0.97964 0.98654 0.94999 1.21491 0.98572 0.91830 1.00822 1.21298 0.97399 1.01119 0.94370 1.21206 1.01109 0.88458 0.97457 1.98439 1.79822 1.42112 1.84794 0.91955 0.98959 0.99338 0.89956 0.92448 0.91187 0.86873 0.75229 0.86868 0.89016 0.82773 0.82499 0.82665 0.84382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.96 13.29 21.45 0.28 -55.67 16 2 C 0.01 0.52 5.46 84.66 0.46 0.99 16 3 Si 0.98 45.02 29.54 68.60 2.03 47.05 16 4 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 5 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 6 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 7 C -0.55 -33.40 9.43 25.60 0.24 -33.15 16 8 H 0.06 3.54 7.81 -2.91 -0.02 3.52 16 9 C 0.21 11.86 5.69 71.24 0.41 12.26 16 10 O -0.41 -20.36 10.30 -145.57 -1.50 -21.86 16 11 C 0.05 1.92 6.33 71.98 0.46 2.37 16 12 C 0.08 2.34 5.84 71.98 0.42 2.76 16 13 O -0.35 -11.45 10.16 -48.76 -0.50 -11.94 16 14 C 0.44 12.35 7.27 71.24 0.52 12.87 16 15 O -0.53 -16.42 16.07 28.39 0.46 -15.96 16 16 C 0.14 3.13 3.48 29.85 0.10 3.23 16 17 H 0.13 3.23 7.95 -2.39 -0.02 3.21 16 18 O -0.53 -10.61 12.69 -129.95 -1.65 -12.26 16 19 C -0.11 -1.93 4.52 29.85 0.13 -1.80 16 20 C -0.08 -1.47 4.92 -19.84 -0.10 -1.57 16 21 C -0.09 -1.21 9.62 22.26 0.21 -1.00 16 22 C -0.11 -1.24 10.05 22.27 0.22 -1.01 16 23 C -0.11 -1.34 10.04 22.26 0.22 -1.12 16 24 C -0.12 -2.12 9.83 22.29 0.22 -1.90 16 25 C -0.06 -1.17 6.31 22.33 0.14 -1.03 16 26 Cl -0.08 -2.13 27.21 -2.72 -0.07 -2.21 16 27 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 28 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 29 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 30 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 31 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.07 2.26 8.13 -2.38 -0.02 2.24 16 33 H 0.11 2.69 8.13 -2.39 -0.02 2.67 16 34 H 0.40 5.08 8.79 -74.06 -0.65 4.43 16 35 H 0.11 1.42 8.05 -2.39 -0.02 1.40 16 36 H 0.09 1.99 7.10 -2.39 -0.02 1.97 16 37 H 0.15 1.15 8.06 -2.91 -0.02 1.12 16 38 H 0.16 0.76 8.06 -2.91 -0.02 0.73 16 39 H 0.16 1.04 8.06 -2.91 -0.02 1.02 16 40 H 0.14 2.11 8.06 -2.91 -0.02 2.09 16 Total: -1.00 -75.29 368.44 3.13 -72.17 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: 0.41 Total: 8.79 kcal Atomic # 6 Polarization: -11.77 SS G_CDS: 3.67 Total: -8.10 kcal Atomic # 7 Polarization: -55.96 SS G_CDS: 0.28 Total: -55.67 kcal Atomic # 8 Polarization: -58.84 SS G_CDS: -3.19 Total: -62.02 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Atomic # 17 Polarization: -2.13 SS G_CDS: -0.07 Total: -2.21 kcal Total: -75.29 3.13 -72.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815236317.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.142 kcal (2) G-P(sol) polarization free energy of solvation -75.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds